Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001197A_C01 KMC001197A_c01
(1027 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177533.1| unknown protein; protein id: At1g73930.1 [Arabi... 61 2e-08
gb|ZP_00109767.1| hypothetical protein [Nostoc punctiforme] 33 7.2
ref|XP_223715.1| similar to microtubule-associated protein EMAP ... 33 9.4
>ref|NP_177533.1| unknown protein; protein id: At1g73930.1 [Arabidopsis thaliana]
gi|25406305|pir||H96766 unknown protein F2P9.20
[imported] - Arabidopsis thaliana
gi|12325141|gb|AAG52517.1|AC016662_11 unknown protein;
75644-77831 [Arabidopsis thaliana]
Length = 623
Score = 61.2 bits (147), Expect = 2e-08
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3
Query: 1019 GGVDSMEICQKLRGDLQAVFNVLSKDMQQVMLSNPQRASLLQGSPEL 879
GG DS QKL+ DLQAVF+VL KDMQQ++L NPQRASLLQ EL
Sbjct: 576 GGADSEGTFQKLKKDLQAVFSVLPKDMQQLLLLNPQRASLLQDPSEL 622
>gb|ZP_00109767.1| hypothetical protein [Nostoc punctiforme]
Length = 577
Score = 33.1 bits (74), Expect = 7.2
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = -3
Query: 977 DLQAVFNVLSKDMQQVMLSNPQRASLLQGSPELTKLP 867
DLQ + ++L +D+QQV+ S+P+R SL++ +L + P
Sbjct: 6 DLQKLLDILPQDLQQVLESHPKRDSLVEVVLDLGRRP 42
>ref|XP_223715.1| similar to microtubule-associated protein EMAP [Rattus norvegicus]
Length = 1382
Score = 32.7 bits (73), Expect = 9.4
Identities = 14/49 (28%), Positives = 27/49 (54%)
Frame = +2
Query: 365 IIFWD*ENSQKVTYIRGRRE*LV**FPMPYSFNPHHRDELRMLGIVNLE 511
++FWD + +K+ RG ++ + NPHH D+L +GI +++
Sbjct: 651 VVFWDWKKGEKIATTRGHKDKI-----FVVKCNPHHADKLVTVGIKHIK 694
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 835,872,822
Number of Sequences: 1393205
Number of extensions: 17435849
Number of successful extensions: 37779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37768
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59877206459
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
