Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000618A_C01 KMC000618A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86394 protein T24P13.20 [imported] - Arabidopsis thaliana ... 102 2e-21
ref|NP_174003.1| hypothetical protein; protein id: At1g26810.1 [... 102 2e-21
dbj|BAB39224.1| P0554D10.8 [Oryza sativa (japonica cultivar-group)] 80 1e-14
ref|NP_566284.1| expressed protein; protein id: At3g06440.1, sup... 77 1e-13
gb|AAF08572.1|AC011623_5 unknown protein [Arabidopsis thaliana] 77 1e-13
>pir||F86394 protein T24P13.20 [imported] - Arabidopsis thaliana
gi|9295733|gb|AAF87039.1|AC006535_17 T24P13.20
[Arabidopsis thaliana]
Length = 684
Score = 102 bits (255), Expect = 2e-21
Identities = 44/65 (67%), Positives = 52/65 (79%)
Frame = -1
Query: 550 KLEDVAMGIWIADMKKEGLDVRYENEGRVYNAGCKDGYVVAHYQDPREMLCLWQKLQEGK 371
KLEDVAMGIWIA++ K GL+ YEN+GR+ + GCKDGYVVAHYQ P EM CLW+K QE K
Sbjct: 617 KLEDVAMGIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQETK 676
Query: 370 GAKCC 356
+ CC
Sbjct: 677 RSLCC 681
>ref|NP_174003.1| hypothetical protein; protein id: At1g26810.1 [Arabidopsis
thaliana] gi|22136678|gb|AAM91658.1| unknown protein
[Arabidopsis thaliana]
Length = 643
Score = 102 bits (255), Expect = 2e-21
Identities = 44/65 (67%), Positives = 52/65 (79%)
Frame = -1
Query: 550 KLEDVAMGIWIADMKKEGLDVRYENEGRVYNAGCKDGYVVAHYQDPREMLCLWQKLQEGK 371
KLEDVAMGIWIA++ K GL+ YEN+GR+ + GCKDGYVVAHYQ P EM CLW+K QE K
Sbjct: 576 KLEDVAMGIWIAELTKHGLEPHYENDGRIISDGCKDGYVVAHYQSPAEMTCLWRKYQETK 635
Query: 370 GAKCC 356
+ CC
Sbjct: 636 RSLCC 640
>dbj|BAB39224.1| P0554D10.8 [Oryza sativa (japonica cultivar-group)]
Length = 475
Score = 80.5 bits (197), Expect = 1e-14
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = -1
Query: 550 KLEDVAMGIWIADMKKEGLDVRYENEGRVYNAGCKDGYVVAHYQDPREMLCLWQKLQE 377
KLEDVAMGIWI K G V Y N+ R Y+ GC YV+AHYQ PR M+CLW+KLQ+
Sbjct: 402 KLEDVAMGIWIQQYKNSGQKVNYVNDDRFYSEGCDSDYVLAHYQSPRLMMCLWEKLQK 459
>ref|NP_566284.1| expressed protein; protein id: At3g06440.1, supported by cDNA:
gi_13605628 [Arabidopsis thaliana]
gi|13605629|gb|AAK32808.1|AF361640_1 AT3g06440/F24P17_7
[Arabidopsis thaliana] gi|25090104|gb|AAN72229.1|
At3g06440/F24P17_7 [Arabidopsis thaliana]
Length = 619
Score = 77.0 bits (188), Expect = 1e-13
Identities = 33/65 (50%), Positives = 44/65 (66%)
Frame = -1
Query: 550 KLEDVAMGIWIADMKKEGLDVRYENEGRVYNAGCKDGYVVAHYQDPREMLCLWQKLQEGK 371
KLEDVAMGIWI + V+Y N+ R +N+ CK Y++ HYQ PR +LCLW+KLQ+
Sbjct: 554 KLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSNYILVHYQTPRLILCLWEKLQKEN 613
Query: 370 GAKCC 356
+ CC
Sbjct: 614 QSICC 618
>gb|AAF08572.1|AC011623_5 unknown protein [Arabidopsis thaliana]
Length = 562
Score = 77.0 bits (188), Expect = 1e-13
Identities = 33/65 (50%), Positives = 44/65 (66%)
Frame = -1
Query: 550 KLEDVAMGIWIADMKKEGLDVRYENEGRVYNAGCKDGYVVAHYQDPREMLCLWQKLQEGK 371
KLEDVAMGIWI + V+Y N+ R +N+ CK Y++ HYQ PR +LCLW+KLQ+
Sbjct: 497 KLEDVAMGIWIQQFNQTIKRVKYINDKRFHNSDCKSNYILVHYQTPRLILCLWEKLQKEN 556
Query: 370 GAKCC 356
+ CC
Sbjct: 557 QSICC 561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,981,615
Number of Sequences: 1393205
Number of extensions: 10818040
Number of successful extensions: 27822
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 26906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27764
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
