Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000550A_C01 KMC000550A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172468.2| leucine-rich repeat transmembrane protein kinas... 131 7e-30
gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.3... 127 1e-28
ref|NP_177363.1| leucine-rich repeat transmembrane protein kinas... 123 1e-27
dbj|BAC06203.1| putative receptor protein kinase [Oryza sativa (... 115 3e-25
ref|NP_199777.1| receptor protein kinase; protein id: At5g49660.... 113 2e-24
>ref|NP_172468.2| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g09970.1, supported by cDNA: gi_17065207
[Arabidopsis thaliana] gi|17065208|gb|AAL32758.1| Unknown
protein [Arabidopsis thaliana]
Length = 976
Score = 131 bits (329), Expect = 7e-30
Identities = 62/109 (56%), Positives = 80/109 (72%)
Frame = -3
Query: 565 APELAYTIDITEKSDVYSFGVVLLELVSGRKPIEEEYGEAKDIVYWVLTHLNDHESILNI 386
APE Y +TEK DVYSFGVVL+ELV+G+KPIE E+GE+KDIV WV +L ES++ I
Sbjct: 851 APEYGYASKVTEKCDVYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKESVMEI 910
Query: 385 LDDRVALECGEDMIKVLKIAIKCTTKLPSLRPTMREVINMLIGAEPCTL 239
+D ++ ED +K+L+IAI CT +LP LRPTMR V+ M+ AEPC L
Sbjct: 911 VDKKIGEMYREDAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCRL 959
>gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.36 [Arabidopsis
thaliana]
Length = 977
Score = 127 bits (318), Expect = 1e-28
Identities = 60/107 (56%), Positives = 78/107 (72%)
Frame = -3
Query: 559 ELAYTIDITEKSDVYSFGVVLLELVSGRKPIEEEYGEAKDIVYWVLTHLNDHESILNILD 380
E Y +TEK DVYSFGVVL+ELV+G+KPIE E+GE+KDIV WV +L ES++ I+D
Sbjct: 854 EYGYASKVTEKCDVYSFGVVLMELVTGKKPIEAEFGESKDIVNWVSNNLKSKESVMEIVD 913
Query: 379 DRVALECGEDMIKVLKIAIKCTTKLPSLRPTMREVINMLIGAEPCTL 239
++ ED +K+L+IAI CT +LP LRPTMR V+ M+ AEPC L
Sbjct: 914 KKIGEMYREDAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCRL 960
>ref|NP_177363.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g72180.1 [Arabidopsis thaliana]
gi|25406152|pir||C96745 hypothetical protein T9N14.3
[imported] - Arabidopsis thaliana
gi|12323667|gb|AAG51800.1|AC067754_16 leucine-rich
receptor-like protein kinase, putative; 28019-31149
[Arabidopsis thaliana]
Length = 977
Score = 123 bits (309), Expect = 1e-27
Identities = 64/115 (55%), Positives = 85/115 (73%), Gaps = 2/115 (1%)
Frame = -3
Query: 565 APELAYTIDITEKSDVYSFGVVLLELVSGRKPIEEEYGEAKDIVYWVLTHL-NDHESILN 389
APELAY+ TEKSDVYSFGVVLLELV+G +P+E+E+GE KDIV +V + + D ++ N
Sbjct: 856 APELAYSFKATEKSDVYSFGVVLLELVTGLRPMEDEFGEGKDIVDYVYSQIQQDPRNLQN 915
Query: 388 ILDDRV-ALECGEDMIKVLKIAIKCTTKLPSLRPTMREVINMLIGAEPCTLKSSD 227
+LD +V + E MI+VLK+ + CTTKLP+LRP+MREV+ L A+PC S D
Sbjct: 916 VLDKQVLSTYIEESMIRVLKMGLLCTTKLPNLRPSMREVVRKLDDADPCVSNSQD 970
>dbj|BAC06203.1| putative receptor protein kinase [Oryza sativa (japonica
cultivar-group)] gi|22202670|dbj|BAC07328.1| putative
receptor protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 964
Score = 115 bits (289), Expect = 3e-25
Identities = 58/102 (56%), Positives = 77/102 (74%)
Frame = -3
Query: 565 APELAYTIDITEKSDVYSFGVVLLELVSGRKPIEEEYGEAKDIVYWVLTHLNDHESILNI 386
APELAY++ +TEKSDVYSFG+VLLEL++GR P ++++ DIV WV +HL +++ +
Sbjct: 846 APELAYSLKVTEKSDVYSFGIVLLELLTGRSPSDQQFDGELDIVSWVSSHL-ANQNPAAV 904
Query: 385 LDDRVALECGEDMIKVLKIAIKCTTKLPSLRPTMREVINMLI 260
LD +V+ EDM KVL IAI CT +LPS RPTMREV+ MLI
Sbjct: 905 LDPKVSSHASEDMTKVLNIAILCTVQLPSERPTMREVVKMLI 946
>ref|NP_199777.1| receptor protein kinase; protein id: At5g49660.1 [Arabidopsis
thaliana]
Length = 966
Score = 113 bits (282), Expect = 2e-24
Identities = 52/106 (49%), Positives = 76/106 (71%)
Frame = -3
Query: 565 APELAYTIDITEKSDVYSFGVVLLELVSGRKPIEEEYGEAKDIVYWVLTHLNDHESILNI 386
APE AY+ T K DVYSFGVVL+EL++G+KP++ +GE K+IV WV T ++ E ++
Sbjct: 833 APEYAYSSKATIKCDVYSFGVVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGLIET 892
Query: 385 LDDRVALECGEDMIKVLKIAIKCTTKLPSLRPTMREVINMLIGAEP 248
LD R++ DMI L++AI+CT++ P++RPTM EV+ +LI A P
Sbjct: 893 LDKRLSESSKADMINALRVAIRCTSRTPTIRPTMNEVVQLLIDATP 938
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,034,744
Number of Sequences: 1393205
Number of extensions: 7808046
Number of successful extensions: 23118
Number of sequences better than 10.0: 2520
Number of HSP's better than 10.0 without gapping: 21615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22328
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
