Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000525A_C01 KMC000525A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL86333.1| unknown protein [Arabidopsis thaliana] gi|2168982... 108 1e-35
ref|NP_564732.1| expressed protein; protein id: At1g58350.1, sup... 107 2e-35
ref|NP_172469.1| hypothetical protein; protein id: At1g09980.1 [... 105 9e-35
pir||T00618 hypothetical protein T27I1.1 - Arabidopsis thaliana ... 63 5e-22
ref|NP_728588.1| CG32333-PA [Drosophila melanogaster] gi|2309274... 61 6e-12
>gb|AAL86333.1| unknown protein [Arabidopsis thaliana] gi|21689821|gb|AAM67554.1|
unknown protein [Arabidopsis thaliana]
Length = 802
Score = 108 bits (271), Expect(2) = 1e-35
Identities = 53/89 (59%), Positives = 65/89 (72%), Gaps = 5/89 (5%)
Frame = -1
Query: 564 LSKMKTLANFKNVILLSSPQDGYVPYHSARIELCPAASSDFSKQGKVFLDMLNNCLDQLR 385
L K KTL +FKN+ILLSSPQDGYVPYHSARIE C AS D SK+G FL+MLNNC+DQ+R
Sbjct: 683 LCKQKTLCSFKNIILLSSPQDGYVPYHSARIESCQPASFDNSKRGVAFLEMLNNCMDQIR 742
Query: 384 -----THSDHRVVLRCDINFETSFLWKGI 313
T RV +RCD+NF+T+ + +
Sbjct: 743 GPSPETPHHQRVFMRCDVNFDTTLYGRNL 771
Score = 62.8 bits (151), Expect(2) = 1e-35
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -2
Query: 326 YGRGFNTLIGRAAHIEFLECDIFVRFIMWSFPELFR 219
YGR N+ IGRAAHIEFLE D+F RFIMWSF +LFR
Sbjct: 767 YGRNLNSFIGRAAHIEFLESDVFARFIMWSFQDLFR 802
>ref|NP_564732.1| expressed protein; protein id: At1g58350.1, supported by cDNA:
gi_6520166 [Arabidopsis thaliana]
gi|25333053|pir||T52441 hypothetical protein ZW18
[imported] - Arabidopsis thaliana
gi|6520167|dbj|BAA87940.1| ZW18 [Arabidopsis thaliana]
gi|8979939|gb|AAF82253.1|AC008051_4 Identical to gene
ZW18 from Arabidopsis thaliana gb|AB028199
Length = 794
Score = 107 bits (267), Expect(2) = 2e-35
Identities = 53/81 (65%), Positives = 60/81 (73%), Gaps = 5/81 (6%)
Frame = -1
Query: 564 LSKMKTLANFKNVILLSSPQDGYVPYHSARIELCPAASSDFSKQGKVFLDMLNNCLDQLR 385
L K KTL NFKN+ILLSSPQDGYVPYHSARIE C AS D SK+G FL+MLNNCLDQ+R
Sbjct: 675 LCKQKTLENFKNIILLSSPQDGYVPYHSARIESCQPASFDSSKRGVAFLEMLNNCLDQIR 734
Query: 384 -----THSDHRVVLRCDINFE 337
RV +RCD+NF+
Sbjct: 735 GPVPEAPHQQRVFMRCDVNFD 755
Score = 63.2 bits (152), Expect(2) = 2e-35
Identities = 28/36 (77%), Positives = 30/36 (82%)
Frame = -2
Query: 326 YGRGFNTLIGRAAHIEFLECDIFVRFIMWSFPELFR 219
YGR N+ IGRAAHIEFLE DIF RFIMWSF +LFR
Sbjct: 759 YGRNLNSFIGRAAHIEFLESDIFARFIMWSFQDLFR 794
>ref|NP_172469.1| hypothetical protein; protein id: At1g09980.1 [Arabidopsis
thaliana] gi|2160190|gb|AAB60753.1| F21M12.37 gene
product [Arabidopsis thaliana]
Length = 553
Score = 105 bits (263), Expect(2) = 9e-35
Identities = 51/85 (60%), Positives = 63/85 (74%), Gaps = 5/85 (5%)
Frame = -1
Query: 552 KTLANFKNVILLSSPQDGYVPYHSARIELCPAASSDFSKQGKVFLDMLNNCLDQLR---- 385
KTL +FKN+ILLSSPQDGYVPYHSARIE C AS D SK+G FL+MLNNC+DQ+R
Sbjct: 438 KTLCSFKNIILLSSPQDGYVPYHSARIESCQPASFDNSKRGVAFLEMLNNCMDQIRGPSP 497
Query: 384 -THSDHRVVLRCDINFETSFLWKGI 313
T RV +RCD+NF+T+ + +
Sbjct: 498 ETPHHQRVFMRCDVNFDTTLYGRNL 522
Score = 62.8 bits (151), Expect(2) = 9e-35
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -2
Query: 326 YGRGFNTLIGRAAHIEFLECDIFVRFIMWSFPELFR 219
YGR N+ IGRAAHIEFLE D+F RFIMWSF +LFR
Sbjct: 518 YGRNLNSFIGRAAHIEFLESDVFARFIMWSFQDLFR 553
>pir||T00618 hypothetical protein T27I1.1 - Arabidopsis thaliana
gi|3540180|gb|AAC34330.1| Unknown protein [Arabidopsis
thaliana]
Length = 837
Score = 63.2 bits (152), Expect(2) = 5e-22
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Frame = -1
Query: 489 YHSARIELCPAASSDFSKQGKVFLDMLNNCLDQLR-----THSDHRVVLRCDINFETSFL 325
+ SARIE C AS D SK+G FL+MLNNC+DQ+R T RV +RCD+NF+T+
Sbjct: 743 FASARIESCQPASFDNSKRGVAFLEMLNNCMDQIRGPSPETPHHQRVFMRCDVNFDTTLY 802
Query: 324 WKGI 313
+ +
Sbjct: 803 GRNL 806
Score = 62.8 bits (151), Expect(2) = 5e-22
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -2
Query: 326 YGRGFNTLIGRAAHIEFLECDIFVRFIMWSFPELFR 219
YGR N+ IGRAAHIEFLE D+F RFIMWSF +LFR
Sbjct: 802 YGRNLNSFIGRAAHIEFLESDVFARFIMWSFQDLFR 837
>ref|NP_728588.1| CG32333-PA [Drosophila melanogaster] gi|23092748|gb|AAF47465.2|
CG32333-PA [Drosophila melanogaster]
Length = 1489
Score = 60.8 bits (146), Expect(2) = 6e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = -1
Query: 564 LSKMKTLANFKNVILLSSPQDGYVPYHSARIELCPAASSDFSKQGKVFLDMLNNCL 397
LS+ TL +FKN++L S QD YVP HSAR+ELC AA D S G ++ +M++N +
Sbjct: 1378 LSQRSTLHHFKNILLCGSSQDRYVPAHSARLELCKAAMRDSSSLGTIYREMVHNII 1433
Score = 30.8 bits (68), Expect(2) = 6e-12
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 311 NTLIGRAAHIEFLECDIFVRFIM 243
NTLIGRAAHI L+ ++F+ M
Sbjct: 1458 NTLIGRAAHIAVLDSELFIEKFM 1480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,377,451
Number of Sequences: 1393205
Number of extensions: 9255648
Number of successful extensions: 20184
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20178
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
