# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj05028.fasta.huge -Q ../query/FLJ00210.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00210, 161 aa vs ./tmplib.10216 library 2210833 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 7.3748+/-0.00586; mu= 1.9495+/- 0.395 mean_var=199.8200+/-44.064, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.090731 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0669 ( 825 res) hk02346 ( 825) 110 25.5 6.8 KIAA1343 ( 520 res) fj00420 ( 520) 103 24.4 9.4 KIAA1862 ( 1070 res) aj00563 (1070) 106 25.1 12 KIAA1261 ( 787 res) hh15855b ( 787) 103 24.6 12 KIAA1064 ( 1315 res) hj05008s1 (1315) 106 25.2 13 KIAA0853 ( 967 res) hk06136 ( 967) 103 24.7 14 FLJ00093 ( 977 res) as00093 ( 977) 102 24.5 16 KIAA1810 ( 579 res) fk03376 ( 579) 97 23.6 17 FLJ00020 ( 1142 res) as00020 (1142) 102 24.6 18 KIAA1187 ( 813 res) fk03027 ( 813) 99 24.1 18 KIAA0023 ( 2111 res) ha00512 (2111) 106 25.4 18 FLJ00153 ( 497 res) sh06127 ( 497) 94 23.2 21 FLJ00281 ( 1495 res) sh01915 (1495) 102 24.7 21 KIAA0680 ( 635 res) hk02746 ( 635) 95 23.4 22 KIAA0290 ( 906 res) ha06644 ( 906) 97 23.9 24 FLJ00230 ( 414 res) sj06557 ( 414) 91 22.7 24 KIAA1375 ( 546 res) fj04426 ( 546) 93 23.1 24 KIAA0546 ( 1919 res) ef04555 (1919) 102 24.9 25 KIAA1930 ( 664 res) fj11193 ( 664) 94 23.3 25 KIAA0112 ( 399 res) ha00609 ( 399) 89 22.4 28 KIAA0809 ( 1385 res) hk10195 (1385) 97 24.1 31 KIAA0765 ( 952 res) hk04803s1 ( 952) 94 23.5 32 KIAA1831 ( 663 res) hk00543 ( 663) 91 22.9 33 KIAA1030 ( 763 res) fh00432 ( 763) 92 23.1 33 FLJ00253 ( 349 res) sj09455 ( 349) 86 22.0 34 KIAA1704 ( 351 res) fj16938 ( 351) 86 22.0 34 KIAA1626 ( 1284 res) fg01925(revised) (1284) 95 23.8 35 KIAA1139 ( 1124 res) hk00330 (1124) 94 23.6 36 FLJ00280 ( 440 res) sh01728 ( 440) 87 22.2 36 FLJ00404 ( 261 res) sj07851 ( 261) 83 21.4 36 KIAA1357 ( 836 res) fj01906 ( 836) 91 23.0 38 KIAA1211 ( 803 res) fh00041 ( 803) 90 22.9 41 FLJ00084 ( 641 res) as00084 ( 641) 88 22.5 42 KIAA1526 ( 963 res) fj04743(revised) ( 963) 91 23.1 42 KIAA1760 ( 2219 res) af00030 (2219) 97 24.3 43 KIAA2036 ( 1322 res) pf06513 (1322) 93 23.5 43 KIAA0456 ( 1095 res) hg00633 (1095) 91 23.2 46 KIAA0662 ( 1114 res) hk01953s1 (1114) 91 23.2 46 KIAA0505 ( 200 res) hh00043 ( 200) 78 20.6 48 FLJ00212 ( 407 res) sj05073 ( 407) 83 21.6 49 FLJ00277 ( 357 res) sh01540 ( 357) 82 21.4 49 FLJ00139 ( 585 res) sh03241 ( 585) 85 22.1 52 KIAA0458 ( 1552 res) ef01252 (1552) 92 23.5 53 KIAA0304 ( 2415 res) af07172 (2415) 95 24.1 54 FLJ00371 ( 625 res) sh06716 ( 625) 85 22.1 54 KIAA0602 ( 962 res) hg01082b ( 962) 88 22.7 55 KIAA0915 ( 846 res) hk06275s1 ( 846) 87 22.5 55 KIAA1308 ( 745 res) fh08652 ( 745) 86 22.3 56 KIAA0217 ( 751 res) ha04826s1 ( 751) 86 22.3 56 KIAA0900 ( 503 res) hk09606s1 ( 503) 83 21.7 56 >>KIAA0669 ( 825 res) hk02346 (825 aa) initn: 141 init1: 75 opt: 110 Z-score: 91.4 bits: 25.5 E(): 6.8 Smith-Waterman score: 129; 25.773% identity (49.485% similar) in 194 aa overlap (1-156:168-353) 10 20 FLJ002 AGAARQPLLGVAGG-QTLGATPGPVMNGPA :.:. : :. :: : :.. ::: .:. KIAA06 QLAAAAAAPANGGGVVSARSVSGALASTLAAAATSAPAPGAPGGPQLAGSSAGPVTAAPS 140 150 160 170 180 190 30 40 50 60 70 80 FLJ002 DGEVDYKKKYRNLK----RKLKFLIYEHECFQEELRKAQRKLLKVSRD---KSFLLDRL- . . ....: .: . . :.. : .. ..: : : .: .:. KIAA06 QPPTTCSSRFRVIKLDHGSGEPYRRGRWTCMEYYERDSDSSVLTRSGDCIRHSSTFDQTA 200 210 220 230 240 250 90 100 110 120 FLJ002 -------------------LQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRS .: . :...::. :: :. .: :.:. :.: . .: KIAA06 ERDSGLGATGGSVVVVVASMQGAHGPESGTDSSLTAVSQLPPSE---KMSQ-PTPAQPQS 260 270 280 290 300 310 130 140 150 160 FLJ002 ----------PPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA ::.::: . :: ::: :: :.: :.:.... KIAA06 FSVGQPQPPPPPVGGAVAQSSAPLPP---FPGAATG-PQPMMAAAQPSQPQGAGPGGQTL 320 330 340 350 360 KIAA06 PPTNVTLAQPAMSLPPQPGPAVGAPAAQQPQQFAYPQPQIPPGHLLPVQPSGQSEYLQQH 370 380 390 400 410 420 >>KIAA1343 ( 520 res) fj00420 (520 aa) initn: 70 init1: 55 opt: 103 Z-score: 88.9 bits: 24.4 E(): 9.4 Smith-Waterman score: 103; 26.042% identity (59.375% similar) in 96 aa overlap (64-154:348-443) 40 50 60 70 80 90 FLJ002 DYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSD : : . :. . : :...:: .... .. KIAA13 EEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQA 320 330 340 350 360 370 100 110 120 130 140 FLJ002 SDATASSDNSETEGT---PKLSDTPAPKRKRSP--PLGGAPSPSSLSLPPSTGFPLQASG :.. ::. . ::... :. ..: .. ..: : .::: . : :. :. . . KIAA13 SNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLN 380 390 400 410 420 430 150 160 FLJ002 VPSPYLSSERGQA : : : KIAA13 QPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVL 440 450 460 470 480 490 >>KIAA1862 ( 1070 res) aj00563 (1070 aa) initn: 76 init1: 48 opt: 106 Z-score: 87.2 bits: 25.1 E(): 12 Smith-Waterman score: 106; 38.462% identity (65.385% similar) in 52 aa overlap (92-139:175-224) 70 80 90 100 110 FLJ002 KAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTP---KLSDTPAPK .::. ... .. ..:.: : .: : : KIAA18 AAAREPCPLRGLLSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQGSPLPIKTADKPWPT 150 160 170 180 190 200 120 130 140 150 160 FLJ002 RKRSP-PLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA ::..: ::: ::: . : :: KIAA18 RKEGPGALGGEPSPPTHS--PSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPG 210 220 230 240 250 260 >>KIAA1261 ( 787 res) hh15855b (787 aa) initn: 86 init1: 76 opt: 103 Z-score: 86.7 bits: 24.6 E(): 12 Smith-Waterman score: 103; 29.545% identity (55.682% similar) in 88 aa overlap (72-158:289-375) 50 60 70 80 90 100 FLJ002 LKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYEN-VDEDSSDSDATASS :.... :::. . .. : :.... : KIAA12 SDGEKSDDNLVVDVSNEDPSSPRGSPAHSPRENGLDKTRLLKKDAPISPASIASSSSTPS 260 270 280 290 300 310 110 120 130 140 150 160 FLJ002 DNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQ ..:. . . : ::. : . : ::.:.: : : : . :: .: :: : KIAA12 SKSKELSLNEKSTTPVSKSNTPTPRTDAPTPGSNSTPGLRPVPGKPPGV-DPLASSLRTP 320 330 340 350 360 370 FLJ002 A KIAA12 MAVPCPYPTPFGIVPHAGMNGELTSPGAAYAGLHNISPQMSAAAAAAAAAAAYGRSPVVG 380 390 400 410 420 430 >>KIAA1064 ( 1315 res) hj05008s1 (1315 aa) initn: 221 init1: 89 opt: 106 Z-score: 86.1 bits: 25.2 E(): 13 Smith-Waterman score: 107; 25.743% identity (50.495% similar) in 101 aa overlap (71-161:1197-1297) 50 60 70 80 90 100 FLJ002 NLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASS ... :. :. .. . ..:. . .. KIAA10 NAGGKATEPAADTGAQPKGAEGNGKSSASKAKEPPFVRKSALEQPETGKAGADGGTPTDR 1170 1180 1190 1200 1210 1220 110 120 130 140 150 FLJ002 DNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGF------PLQASGVP---- :: .. :: . .:: :: :. :.:. .:: : : : .:: : KIAA10 YNSYNRPRPKAAAAPAATTATPPPEGAPPQPGVHNLPVPTLFGTVKQTPKTGSGSPFAGN 1230 1240 1250 1260 1270 1280 160 FLJ002 SPYLSSERGQA :: .:. : KIAA10 SPAREGEQDAASLKDVFKGFDPTASPFCQ 1290 1300 1310 >>KIAA0853 ( 967 res) hk06136 (967 aa) initn: 156 init1: 87 opt: 103 Z-score: 85.6 bits: 24.7 E(): 14 Smith-Waterman score: 103; 27.083% identity (47.917% similar) in 144 aa overlap (17-151:274-416) 10 20 30 40 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEV-----DYKKKYRN .: : . . ::.: ::: . KIAA08 DRETSDRAHDENKKKAKIQKKPIKKKKEDDVGIERGNIETTSEDGQVFSPKKGQKKKSIE 250 260 270 280 290 300 50 60 70 80 90 FLJ002 LKRKLK---FLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATA ::: . : ..: :. .: . .. : :.. ... :::. .. :: KIAA08 KKRKKSKGDSDISDEEAAQQSKKKRGPRTPPITT-KEELVEMCNGKNGILEDSQKKEDTA 310 320 330 340 350 360 100 110 120 130 140 150 FLJ002 SSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSP-SSLSLPPSTGFPLQASGVPSPYLSSE :: :. . . : : . . :..::: ::: :: :. ::. KIAA08 FSDWSDEDVPDRTEVTEAEHTATATTPGSTPSPLSSLLPPPPPVATATATTVPATLAATT 370 380 390 400 410 420 160 FLJ002 RGQA KIAA08 AAAATSFSTSAITISTSATPTNTTNNTFANEDSHRKCHRTRVEKVETPHVTIEDAQHRKP 430 440 450 460 470 480 >>FLJ00093 ( 977 res) as00093 (977 aa) initn: 111 init1: 86 opt: 102 Z-score: 84.9 bits: 24.5 E(): 16 Smith-Waterman score: 102; 36.000% identity (60.000% similar) in 50 aa overlap (96-143:555-602) 70 80 90 100 110 120 FLJ002 KLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPL : . .:: :: ..:. : :.. ::: FLJ000 PRSQAQRYLSSPSGPLRQRAPNFSLERTLAAEMAVPGSEFEGHKRISEQPLPNKTISPP- 530 540 550 560 570 580 130 140 150 160 FLJ002 GGAPSPSSLSLP--PSTGFPLQASGVPSPYLSSERGQA ::.:.. :: :. .: FLJ000 -PAPAPAAAPLPCGPTETIPSFLLTRAGRDQAICELQEEVSRLRLRLEDSLHQPLQGSPT 590 600 610 620 630 640 >>KIAA1810 ( 579 res) fk03376 (579 aa) initn: 80 init1: 75 opt: 97 Z-score: 84.1 bits: 23.6 E(): 17 Smith-Waterman score: 97; 26.761% identity (53.521% similar) in 71 aa overlap (91-160:387-457) 70 80 90 100 110 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDT-PAPKR .. ..:::.: .. :. . .. ::: KIAA18 VPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGPAPGF 360 370 380 390 400 410 120 130 140 150 160 FLJ002 KRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :: : : : ...:: : .:. : . .:. KIAA18 PFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLRNIHTLL 420 430 440 450 460 470 KIAA18 DAAMLQINQYLTVLASLGPPRPATSVNSTEETATTVVAAASSTSIPSSEATTPTPGASPP 480 490 500 510 520 530 >>FLJ00020 ( 1142 res) as00020 (1142 aa) initn: 111 init1: 86 opt: 102 Z-score: 84.0 bits: 24.6 E(): 18 Smith-Waterman score: 102; 36.000% identity (60.000% similar) in 50 aa overlap (96-143:720-767) 70 80 90 100 110 120 FLJ002 KLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPL : . .:: :: ..:. : :.. ::: FLJ000 PRSQAQRYLSSPSGPLRQRAPNFSLERTLAAEMAVPGSEFEGHKRISEQPLPNKTISPP- 690 700 710 720 730 740 130 140 150 160 FLJ002 GGAPSPSSLSLP--PSTGFPLQASGVPSPYLSSERGQA ::.:.. :: :. .: FLJ000 -PAPAPAAAPLPCGPTETIPSFLLTRAGRDQAICELQEEVSRLRLRLEDSLHQPLQGSPT 750 760 770 780 790 800 >>KIAA1187 ( 813 res) fk03027 (813 aa) initn: 124 init1: 70 opt: 99 Z-score: 83.7 bits: 24.1 E(): 18 Smith-Waterman score: 99; 31.250% identity (56.250% similar) in 64 aa overlap (89-147:497-560) 60 70 80 90 100 110 FLJ002 ELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDN-----SETEGTPKLSD ::.:.: ::... . .: : KIAA11 PPSPRGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKESAAPASPAPSPAPSP 470 480 490 500 510 520 120 130 140 150 160 FLJ002 TPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::: .:..:: . . :. ::. . :. : KIAA11 TPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKPMAGTTDREEATRLLAEKRRQAREQ 530 540 550 560 570 580 KIAA11 REREEQERRLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQEEQERLQ 590 600 610 620 630 640 161 residues in 1 query sequences 2210833 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:41 2009 done: Fri Feb 27 10:44:42 2009 Total Scan time: 0.350 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]