# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00066.fasta.nr -Q ../query/FLJ00066.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00066, 162 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7825080 sequences
  Expectation_n fit: rho(ln(x))= 5.6702+/-0.000191; mu= 5.6638+/- 0.011
 mean_var=91.4667+/-17.335, 0's: 33 Z-trim: 34  B-trim: 144 in 1/65
 Lambda= 0.134104

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|10440460|dbj|BAB15763.1| FLJ00066 protein [Homo ( 162) 1163 233.8 8.3e-60
gi|119605529|gb|EAW85123.1| hCG1787598 [Homo sapie ( 121)  829 169.1 1.9e-40


>>gi|10440460|dbj|BAB15763.1| FLJ00066 protein [Homo sap  (162 aa)
 initn: 1163 init1: 1163 opt: 1163  Z-score: 1230.0  bits: 233.8 E(): 8.3e-60
Smith-Waterman score: 1163;  100.000% identity (100.000% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
FLJ000 SPPACLVDGQQALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 SPPACLVDGQQALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAF
               10        20        30        40        50        60

               70        80        90       100       110       120
FLJ000 LLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|104 LLHVLKPPQGAATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEA
               70        80        90       100       110       120

              130       140       150       160  
FLJ000 LHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
       ::::::::::::::::::::::::::::::::::::::::::
gi|104 LHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
              130       140       150       160  

>>gi|119605529|gb|EAW85123.1| hCG1787598 [Homo sapiens]   (121 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 882.5  bits: 169.1 E(): 1.9e-40
Smith-Waterman score: 829;  95.868% identity (98.347% similar) in 121 aa overlap (42-162:1-121)

              20        30        40        50        60        70 
FLJ000 ALPSGGGLYPNSLRQGSVAQAGSGCLSWFCMVHFANPEDQFLGFQASAFLLHVLKPPQGA
                                     ::::::::::::::::::::::::: :.::
gi|119                               MVHFANPEDQFLGFQASAFLLHVLKSPHGA
                                             10        20        30

              80        90       100       110       120       130 
FLJ000 ATPSGSSQGGPAMFSGLPVSPLPSSYPQNPSFIPPPSSCVSCSTHTGEALHSSSIFQPWH
       :::::::::::::: :::::::::.::::::::::::::::::.::::::::::::::::
gi|119 ATPSGSSQGGPAMFCGLPVSPLPSGYPQNPSFIPPPSSCVSCSAHTGEALHSSSIFQPWH
               40        50        60        70        80        90

             140       150       160  
FLJ000 RTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
       :::::::::::::::::::::::::::::::
gi|119 RTDGKGRAGFSASGTRGRPHLTPPSPVHQTG
              100       110       120 




162 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Fri Feb 27 18:40:02 2009 done: Fri Feb 27 18:44:13 2009
 Total Scan time: 605.110 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]