# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00054.fasta.nr -Q ../query/FLJ00054.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00054, 104 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827016 sequences Expectation_n fit: rho(ln(x))= 5.4473+/-0.000184; mu= 4.3470+/- 0.010 mean_var=73.1262+/-14.022, 0's: 38 Z-trim: 38 B-trim: 0 in 0/67 Lambda= 0.149981 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|16549121|dbj|BAB70756.1| FLJ00054 protein [Homo ( 104) 731 166.0 9.1e-40 gi|119622927|gb|EAX02522.1| hCG1992770 [Homo sapie ( 94) 664 151.5 1.9e-35 >>gi|16549121|dbj|BAB70756.1| FLJ00054 protein [Homo sap (104 aa) initn: 731 init1: 731 opt: 731 Z-score: 870.2 bits: 166.0 E(): 9.1e-40 Smith-Waterman score: 731; 100.000% identity (100.000% similar) in 104 aa overlap (1-104:1-104) 10 20 30 40 50 60 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG 10 20 30 40 50 60 70 80 90 100 FLJ000 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV :::::::::::::::::::::::::::::::::::::::::::: gi|165 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV 70 80 90 100 >>gi|119622927|gb|EAX02522.1| hCG1992770 [Homo sapiens] (94 aa) initn: 664 init1: 664 opt: 664 Z-score: 792.5 bits: 151.5 E(): 1.9e-35 Smith-Waterman score: 664; 100.000% identity (100.000% similar) in 94 aa overlap (11-104:1-94) 10 20 30 40 50 60 FLJ000 TSFPAGVYLGMPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG :::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MPVPKPSSSTTPAGVPWDPSFQAPASLGTCDSPGGQTQKDLLGEGEPAKG 10 20 30 40 50 70 80 90 100 FLJ000 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV :::::::::::::::::::::::::::::::::::::::::::: gi|119 VWGALWGTLISHPVPLATFQLALPVRVDQLEQPRIPHPRSLALV 60 70 80 90 104 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 17:18:28 2009 done: Fri Feb 27 17:22:07 2009 Total Scan time: 513.070 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]