# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/as00012.fasta.nr -Q ../query/FLJ00012.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00012, 182 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7820278 sequences Expectation_n fit: rho(ln(x))= 5.1988+/-0.00019; mu= 8.3166+/- 0.011 mean_var=72.6712+/-14.373, 0's: 39 Z-trim: 81 B-trim: 1730 in 2/66 Lambda= 0.150450 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|10440355|dbj|BAB15713.1| FLJ00012 protein [Homo ( 182) 1270 283.8 9.4e-75 gi|52545744|emb|CAH56355.1| hypothetical protein [ ( 323) 783 178.3 9.7e-43 gi|119595281|gb|EAW74875.1| ATG16 autophagy relate ( 374) 783 178.4 1.1e-42 gi|119595283|gb|EAW74877.1| ATG16 autophagy relate ( 513) 783 178.4 1.4e-42 gi|33874499|gb|AAH36713.1| ATG16L2 protein [Homo s ( 542) 783 178.5 1.5e-42 gi|189027648|sp|Q8NAA4.2|A16L2_HUMAN RecName: Full ( 619) 783 178.5 1.6e-42 gi|21751745|dbj|BAC04021.1| unnamed protein produc ( 619) 783 178.5 1.6e-42 gi|21748789|dbj|BAC03485.1| unnamed protein produc ( 513) 773 176.3 6.3e-42 gi|109107693|ref|XP_001110048.1| PREDICTED: simila ( 627) 767 175.0 1.8e-41 gi|47847374|dbj|BAD21359.1| mFLJ00012 protein [Mus ( 454) 728 166.5 5e-39 gi|148684548|gb|EDL16495.1| mCG6774, isoform CRA_b ( 484) 728 166.5 5.2e-39 gi|148684551|gb|EDL16498.1| mCG6774, isoform CRA_e ( 626) 728 166.6 6.4e-39 gi|148684547|gb|EDL16494.1| mCG6774, isoform CRA_a ( 410) 721 164.9 1.3e-38 gi|189027649|sp|Q6KAU8.2|A16L2_MOUSE RecName: Full ( 623) 721 165.1 1.8e-38 gi|149068743|gb|EDM18295.1| rCG40272, isoform CRA_ ( 362) 708 162.1 8.5e-38 gi|149068744|gb|EDM18296.1| rCG40272, isoform CRA_ ( 492) 708 162.2 1.1e-37 gi|73988189|ref|XP_542323.2| PREDICTED: similar to ( 614) 690 158.3 1.9e-36 gi|76636041|ref|XP_588289.2| PREDICTED: similar to ( 616) 682 156.6 6.4e-36 gi|90077404|dbj|BAE88382.1| unnamed protein produc ( 348) 612 141.2 1.5e-31 gi|148684549|gb|EDL16496.1| mCG6774, isoform CRA_c ( 473) 596 137.8 2.2e-30 gi|37805293|gb|AAH60054.1| Atg16l2 protein [Mus mu ( 477) 581 134.6 2.1e-29 gi|149068742|gb|EDM18294.1| rCG40272, isoform CRA_ ( 351) 576 133.4 3.5e-29 gi|149535215|ref|XP_001512513.1| PREDICTED: simila ( 345) 516 120.4 2.9e-25 gi|189518561|ref|XP_001345780.2| PREDICTED: simila ( 608) 362 87.1 5.1e-15 gi|47216472|emb|CAG02123.1| unnamed protein produc ( 640) 328 79.8 8.9e-13 gi|109101516|ref|XP_001114668.1| PREDICTED: ATG16 ( 309) 302 73.9 2.5e-11 gi|7021851|dbj|BAA91413.1| unnamed protein product ( 309) 297 72.8 5.3e-11 gi|119591441|gb|EAW71035.1| ATG16 autophagy relate ( 309) 297 72.8 5.3e-11 gi|114152774|sp|Q5I0B9.2|ATG16_XENTR RecName: Full ( 622) 299 73.5 6.8e-11 gi|89273966|emb|CAJ82169.1| APG16 autophagy 16-lik ( 623) 299 73.5 6.8e-11 gi|126314291|ref|XP_001373496.1| PREDICTED: simila ( 607) 297 73.0 9.1e-11 gi|117167897|gb|AAI24843.1| Unknown (protein for I ( 306) 292 71.7 1.1e-10 gi|55824674|gb|AAH86465.1| LOC495838 protein [Xeno ( 322) 292 71.7 1.2e-10 gi|114583974|ref|XP_001149658.1| PREDICTED: APG16 ( 480) 294 72.3 1.2e-10 gi|194665159|ref|XP_877095.3| PREDICTED: similar t ( 588) 295 72.6 1.2e-10 gi|80476904|gb|AAI08837.1| LOC495838 protein [Xeno ( 349) 292 71.8 1.2e-10 gi|134024909|gb|AAI34827.1| LOC100049143 protein [ ( 622) 293 72.2 1.7e-10 gi|118094820|ref|XP_422568.2| PREDICTED: similar t ( 607) 292 71.9 1.9e-10 gi|12837565|dbj|BAB23866.1| unnamed protein produc ( 468) 290 71.4 2.1e-10 gi|148708200|gb|EDL40147.1| autophagy-related 16-l ( 468) 290 71.4 2.1e-10 gi|194211429|ref|XP_001915817.1| PREDICTED: simila ( 584) 291 71.7 2.2e-10 gi|148708198|gb|EDL40145.1| autophagy-related 16-l ( 561) 290 71.5 2.4e-10 gi|29144977|gb|AAH49122.1| Atg16l1 protein [Mus mu ( 623) 290 71.5 2.7e-10 gi|73993998|ref|XP_862068.1| PREDICTED: similar to ( 623) 290 71.5 2.7e-10 gi|27552521|dbj|BAC55092.1| Apg16L gamma [Mus musc ( 623) 290 71.5 2.7e-10 gi|73993996|ref|XP_534608.2| PREDICTED: similar to ( 588) 285 70.4 5.4e-10 gi|73993994|ref|XP_850664.1| PREDICTED: similar to ( 607) 285 70.4 5.5e-10 gi|62510476|sp|Q5RAC9.1|A16L1_PONAB RecName: Full= ( 607) 284 70.2 6.4e-10 gi|74190336|dbj|BAE37254.1| unnamed protein produc ( 434) 281 69.4 7.7e-10 gi|114583978|ref|XP_001149723.1| PREDICTED: APG16 ( 444) 281 69.4 7.9e-10 >>gi|10440355|dbj|BAB15713.1| FLJ00012 protein [Homo sap (182 aa) initn: 1270 init1: 1270 opt: 1270 Z-score: 1498.3 bits: 283.8 E(): 9.4e-75 Smith-Waterman score: 1270; 100.000% identity (100.000% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPTRAQDVLDAHLSEVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPTRAQDVLDAHLSEVN 10 20 30 40 50 60 70 80 90 100 110 120 FLJ000 AVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSVDFDPSGYQVLAATY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 AVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSVDFDPSGYQVLAATY 70 80 90 100 110 120 130 140 150 160 170 180 FLJ000 NQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDPYLGPGYRRHCLDTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 NQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDPYLGPGYRRHCLDTR 130 140 150 160 170 180 FLJ000 IR :: gi|104 IR >>gi|52545744|emb|CAH56355.1| hypothetical protein [Homo (323 aa) initn: 783 init1: 783 opt: 783 Z-score: 923.5 bits: 178.3 E(): 9.7e-43 Smith-Waterman score: 783; 100.000% identity (100.000% similar) in 119 aa overlap (17-135:1-119) 10 20 30 40 50 60 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPTRAQDVLDAHLSEVN :::::::::::::::::::::::::::::::::::::::::::: gi|525 FKKRRGHSIGGAPEQRYQIIPVCVAARLPTRAQDVLDAHLSEVN 10 20 30 40 70 80 90 100 110 120 FLJ000 AVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSVDFDPSGYQVLAATY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|525 AVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSVDFDPSGYQVLAATY 50 60 70 80 90 100 130 140 150 160 170 180 FLJ000 NQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDPYLGPGYRRHCLDTR ::::::::::::::: gi|525 NQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTI 110 120 130 140 150 160 >>gi|119595281|gb|EAW74875.1| ATG16 autophagy related 16 (374 aa) initn: 783 init1: 783 opt: 783 Z-score: 922.6 bits: 178.4 E(): 1.1e-42 Smith-Waterman score: 783; 100.000% identity (100.000% similar) in 119 aa overlap (17-135:52-170) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::::::: gi|119 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPT 30 40 50 60 70 80 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV 90 100 110 120 130 140 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|119 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 150 160 170 180 190 200 >>gi|119595283|gb|EAW74877.1| ATG16 autophagy related 16 (513 aa) initn: 783 init1: 783 opt: 783 Z-score: 920.7 bits: 178.4 E(): 1.4e-42 Smith-Waterman score: 783; 100.000% identity (100.000% similar) in 119 aa overlap (17-135:191-309) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::::::: gi|119 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPT 170 180 190 200 210 220 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV 230 240 250 260 270 280 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|119 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 290 300 310 320 330 340 >>gi|33874499|gb|AAH36713.1| ATG16L2 protein [Homo sapie (542 aa) initn: 783 init1: 783 opt: 783 Z-score: 920.4 bits: 178.5 E(): 1.5e-42 Smith-Waterman score: 783; 100.000% identity (100.000% similar) in 119 aa overlap (17-135:220-338) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::::::: gi|338 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPT 190 200 210 220 230 240 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|338 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV 250 260 270 280 290 300 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|338 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 310 320 330 340 350 360 >>gi|189027648|sp|Q8NAA4.2|A16L2_HUMAN RecName: Full=Aut (619 aa) initn: 783 init1: 783 opt: 783 Z-score: 919.5 bits: 178.5 E(): 1.6e-42 Smith-Waterman score: 783; 100.000% identity (100.000% similar) in 119 aa overlap (17-135:297-415) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::::::: gi|189 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPT 270 280 290 300 310 320 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV 330 340 350 360 370 380 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|189 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 390 400 410 420 430 440 >>gi|21751745|dbj|BAC04021.1| unnamed protein product [H (619 aa) initn: 783 init1: 783 opt: 783 Z-score: 919.5 bits: 178.5 E(): 1.6e-42 Smith-Waterman score: 783; 100.000% identity (100.000% similar) in 119 aa overlap (17-135:297-415) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::::::: gi|217 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPT 270 280 290 300 310 320 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV 330 340 350 360 370 380 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|217 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 390 400 410 420 430 440 >>gi|21748789|dbj|BAC03485.1| unnamed protein product [H (513 aa) initn: 773 init1: 773 opt: 773 Z-score: 909.0 bits: 176.3 E(): 6.3e-42 Smith-Waterman score: 773; 99.160% identity (99.160% similar) in 119 aa overlap (17-135:191-309) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::::::: gi|217 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVAARLPT 170 180 190 200 210 220 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|217 RAQDVLDAHLSEVNAVGFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV 230 240 250 260 270 280 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|217 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 290 300 310 320 330 340 >>gi|109107693|ref|XP_001110048.1| PREDICTED: similar to (627 aa) initn: 767 init1: 767 opt: 767 Z-score: 900.7 bits: 175.0 E(): 1.8e-41 Smith-Waterman score: 767; 97.479% identity (100.000% similar) in 119 aa overlap (17-135:305-423) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAARLPT :::::::::::::::::::::::::.:::: gi|109 CEKWKRPFRSASATSLTLSHCVDVVKGLLDFKKRRGHSIGGAPEQRYQIIPVCVATRLPT 280 290 300 310 320 330 50 60 70 80 90 100 FLJ000 RAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGSITSV .::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|109 QAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEVNQTLEGAGGSITSV 340 350 360 370 380 390 110 120 130 140 150 160 FLJ000 DFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQTLDP ::::::::::::::::::::::::::::: gi|109 DFDPSGYQVLAATYNQAAQLWKVGEAQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV 400 410 420 430 440 450 >>gi|47847374|dbj|BAD21359.1| mFLJ00012 protein [Mus mus (454 aa) initn: 726 init1: 726 opt: 728 Z-score: 856.9 bits: 166.5 E(): 5e-39 Smith-Waterman score: 728; 89.431% identity (96.748% similar) in 123 aa overlap (13-135:241-362) 10 20 30 40 FLJ000 EGLAECPPDPNPPYPSFKKRRGHSIGGAPEQRYQIIPVCVAA :. :::::::::.::::::::: :::::.: gi|478 EDGTKEETVALAPAALPEFSESETCEKWKRPF-SFKKRRGHSVGGAPEQRYQSIPVCVSA 220 230 240 250 260 50 60 70 80 90 100 FLJ000 RLPTRAQDVLDAHLSEVNAVRFGPNSSLLATGGADRLIHLWNVVGSRLEANQTLEGAGGS ..:..::::::::::::::: ::::::::::::::::::::::::.:::::::::::::: gi|478 QIPSQAQDVLDAHLSEVNAVCFGPNSSLLATGGADRLIHLWNVVGGRLEANQTLEGAGGS 270 280 290 300 310 320 110 120 130 140 150 160 FLJ000 ITSVDFDPSGYQVLAATYNQAAQLWKVGEAQSKVRPDWGGCLEVRGHTSGLGGLLWGLGQ :::::::::: ::::::::::::::::::.::: gi|478 ITSVDFDPSGSQVLAATYNQAAQLWKVGETQSKGSRTINVLSYCNDVVCGDHIIISGHND 330 340 350 360 370 380 170 180 FLJ000 TLDPYLGPGYRRHCLDTRIR gi|478 QKIRFWDSRGPHCIQVIPVQGRVTSLHLSYDQLHLLSCSRDNTLKVIDLRISNIRQVFRA 390 400 410 420 430 440 182 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 12:02:22 2009 done: Fri Feb 27 12:06:51 2009 Total Scan time: 640.750 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]