BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149576.1 - phase: 1
(110 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q93VA3 Cytochrome c6, chloroplast precursor [Arabidops... 195 2e-49
UniRef100_Q7F1I2 Cytochrome C6, chloroplast-like protein [Oryza ... 113 9e-25
UniRef100_P00112 Cytochrome c6 [Microcystis aeruginosa] 65 4e-10
UniRef100_P25935 Cytochrome c6 precursor [Synechococcus sp.] 64 6e-10
UniRef100_Q8WKJ8 Cytochrome c6 precursor [Porphyra yezoensis] 64 6e-10
UniRef100_Q7NJ52 Cytochrome c6 [Gloeobacter violaceus] 64 8e-10
UniRef100_P00114 Cytochrome c6 [Synechococcus lividus] 64 1e-09
UniRef100_P00110 Cytochrome c6 [Bumilleriopsis filiformis] 64 1e-09
UniRef100_UPI00002A8195 UPI00002A8195 UniRef100 entry 63 2e-09
UniRef100_P00111 Cytochrome c6 [Porphyra tenera] 63 2e-09
UniRef100_Q9F1L9 Cytochrome c6 precursor [Synechococcus vulcanus] 62 2e-09
UniRef100_P56534 Cytochrome c6 precursor [Synechococcus elongatus] 62 2e-09
UniRef100_UPI00002E675C UPI00002E675C UniRef100 entry 62 4e-09
UniRef100_P46445 Cytochrome c6 precursor [Synechocystis sp.] 62 4e-09
UniRef100_P51200 Cytochrome c6 precursor [Porphyra purpurea] 62 4e-09
UniRef100_Q9TLW1 Cytochrome c6 precursor [Cyanidium caldarium] 62 4e-09
UniRef100_Q7TV27 Cytochrome c, class IC:Cytochrome c, class I [P... 61 5e-09
UniRef100_P00108 Cytochrome c6 [Petalonia fascia] 61 5e-09
UniRef100_P00109 Cytochrome c6 [Alaria esculenta] 61 5e-09
UniRef100_Q76FN8 Cytochrome c6 precursor [Hizikia fusiformis] 61 7e-09
>UniRef100_Q93VA3 Cytochrome c6, chloroplast precursor [Arabidopsis thaliana]
Length = 175
Score = 195 bits (495), Expect = 2e-49
Identities = 85/108 (78%), Positives = 101/108 (92%)
Query: 1 SIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGK 60
S+ QT+DIQRGATLF++ CIGCHD GGNIIQPG+TLFTKDL+RNGVDTEEEIYRVTY+GK
Sbjct: 68 SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATLFTKDLERNGVDTEEEIYRVTYFGK 127
Query: 61 GRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETE 108
GRMPGFG++C PRGQCTFG RL+DE+IK+LAEFVK QAD+GWP++ T+
Sbjct: 128 GRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFVKFQADQGWPTVSTD 175
>UniRef100_Q7F1I2 Cytochrome C6, chloroplast-like protein [Oryza sativa]
Length = 73
Score = 113 bits (283), Expect = 9e-25
Identities = 48/68 (70%), Positives = 59/68 (86%)
Query: 39 KDLQRNGVDTEEEIYRVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQA 98
KDL+RNGV TE+E+Y +TYYGKGRMPGFG++C PRGQCTFG RL ++DIK+LA FVK QA
Sbjct: 2 KDLERNGVATEDELYNITYYGKGRMPGFGEKCTPRGQCTFGPRLVEDDIKLLAAFVKSQA 61
Query: 99 DKGWPSIE 106
+ GWP I+
Sbjct: 62 ENGWPKID 69
>UniRef100_P00112 Cytochrome c6 [Microcystis aeruginosa]
Length = 81
Score = 65.1 bits (157), Expect = 4e-10
Identities = 35/92 (38%), Positives = 46/92 (49%), Gaps = 12/92 (13%)
Query: 11 GATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKEC 70
GA++FS C CH G N++ TL +DL + G D+ E I G G MP
Sbjct: 2 GASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMP------ 55
Query: 71 MPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
FG RL EDI+ +A +V QA+KGW
Sbjct: 56 ------AFGGRLSAEDIEAVANYVLAQAEKGW 81
>UniRef100_P25935 Cytochrome c6 precursor [Synechococcus sp.]
Length = 111
Score = 64.3 bits (155), Expect = 6e-10
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3 AQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGR 62
AQ D+ G +FS C CH G N++ P TL DL + G+ + E I GKG
Sbjct: 22 AQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYGMASIEAITTQVTNGKGA 81
Query: 63 MPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
MP FG++L +DI +A +V Q++KGW
Sbjct: 82 MP------------AFGSKLSADDIADVASYVLDQSEKGW 109
>UniRef100_Q8WKJ8 Cytochrome c6 precursor [Porphyra yezoensis]
Length = 110
Score = 64.3 bits (155), Expect = 6e-10
Identities = 37/101 (36%), Positives = 47/101 (45%), Gaps = 12/101 (11%)
Query: 2 IAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKG 61
IA D+ G +FS C CH G N I P TL L+ N ++T + I GK
Sbjct: 22 IAFAADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKN 81
Query: 62 RMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
MP FG RL DEDI+ A +V Q++KGW
Sbjct: 82 AMP------------AFGGRLVDEDIEDAANYVLSQSEKGW 110
>UniRef100_Q7NJ52 Cytochrome c6 [Gloeobacter violaceus]
Length = 114
Score = 63.9 bits (154), Expect = 8e-10
Identities = 34/102 (33%), Positives = 49/102 (47%), Gaps = 10/102 (9%)
Query: 1 SIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGK 60
S+ D+ +G +F C CH G N + P TL +DL++ +DT I Y GK
Sbjct: 21 SLQAAADLAQGEKVFKANCAMCHAGGRNTVNPAKTLKIEDLKKYKMDTAAAISAQLYNGK 80
Query: 61 GRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
G MP FGK +L+ + I + +V QA+KGW
Sbjct: 81 GAMPAFGK----------NGKLKQDQIDSVTAYVLDQANKGW 112
>UniRef100_P00114 Cytochrome c6 [Synechococcus lividus]
Length = 87
Score = 63.5 bits (153), Expect = 1e-09
Identities = 34/96 (35%), Positives = 49/96 (50%), Gaps = 12/96 (12%)
Query: 7 DIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGF 66
D+ GA +FS C CH GGN++ TL + L++ G+++E+ I +GK MP
Sbjct: 2 DLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMNSEDAIIYQVQHGKNAMP-- 59
Query: 67 GKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
F RL DE I+ +A +V QA KGW
Sbjct: 60 ----------AFAGRLTDEQIQDVAAYVLDQAAKGW 85
>UniRef100_P00110 Cytochrome c6 [Bumilleriopsis filiformis]
Length = 86
Score = 63.5 bits (153), Expect = 1e-09
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 7 DIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEI-YRVTYYGKGRMPG 65
DI+ G +F+ C CH G N+I P TL L+ NG++ I Y+VT
Sbjct: 2 DIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVTN-------- 53
Query: 66 FGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
GK MP FG RL D DI+ +A +V Q+++GW
Sbjct: 54 -GKNAMP----AFGGRLSDSDIEDVANYVLSQSEQGW 85
>UniRef100_UPI00002A8195 UPI00002A8195 UniRef100 entry
Length = 110
Score = 62.8 bits (151), Expect = 2e-09
Identities = 34/92 (36%), Positives = 49/92 (52%), Gaps = 12/92 (13%)
Query: 11 GATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKEC 70
GA LF C+GCH GGNII+ G TL K L+RNG++ EI + G+G+M G+G+
Sbjct: 26 GAALFEVHCVGCHLNGGNIIRRGKTLKLKALERNGIEGPLEIAMIATEGRGQMSGYGEV- 84
Query: 71 MPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
L ++ +AE++ QA W
Sbjct: 85 -----------LGEDGADAVAEWIWQQAQNDW 105
>UniRef100_P00111 Cytochrome c6 [Porphyra tenera]
Length = 85
Score = 62.8 bits (151), Expect = 2e-09
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 7 DIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGF 66
D+ G +FS C CH G N I P TL L+ N ++T + I GK MP
Sbjct: 2 DLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMP-- 59
Query: 67 GKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
FG RL DEDI+ A +V Q++KGW
Sbjct: 60 ----------AFGGRLVDEDIEDAANYVLSQSEKGW 85
>UniRef100_Q9F1L9 Cytochrome c6 precursor [Synechococcus vulcanus]
Length = 112
Score = 62.4 bits (150), Expect = 2e-09
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3 AQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGR 62
A D+ GA +FS C CH GGN++ TL + L++ G+ +E+ I +GK
Sbjct: 23 ALAADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNA 82
Query: 63 MPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
MP F RL DE I+ +A +V QA KGW
Sbjct: 83 MP------------AFAGRLTDEQIQDVAAYVLDQAAKGW 110
>UniRef100_P56534 Cytochrome c6 precursor [Synechococcus elongatus]
Length = 112
Score = 62.4 bits (150), Expect = 2e-09
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3 AQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGR 62
A D+ GA +FS C CH GGN++ TL + L++ G+ +E+ I +GK
Sbjct: 23 ALAADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNA 82
Query: 63 MPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
MP F RL DE I+ +A +V QA KGW
Sbjct: 83 MP------------AFAGRLTDEQIQDVAAYVLDQAAKGW 110
>UniRef100_UPI00002E675C UPI00002E675C UniRef100 entry
Length = 98
Score = 61.6 bits (148), Expect = 4e-09
Identities = 34/94 (36%), Positives = 49/94 (51%), Gaps = 12/94 (12%)
Query: 11 GATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKEC 70
GA LF C+GCH GGN+I+ G TL K L+RNG+ EI + G+G+M G+G+
Sbjct: 14 GAALFEAHCVGCHLNGGNLIRRGKTLKLKALERNGIQGPLEIAMIATEGRGQMSGYGEV- 72
Query: 71 MPRGQCTFGARLEDEDIKILAEFVKLQADKGWPS 104
L + + +AE++ QA W S
Sbjct: 73 -----------LGEGGAEAVAEWIWQQAQNEWSS 95
>UniRef100_P46445 Cytochrome c6 precursor [Synechocystis sp.]
Length = 120
Score = 61.6 bits (148), Expect = 4e-09
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 3 AQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGR 62
A D+ G +F+ C CH+ G N I P TL DL+ NG ++ I G G
Sbjct: 33 ALAADLAHGKAIFAGNCAACHNGGLNAINPSKTLKMADLEANGKNSVAAIVAQITNGNGA 92
Query: 63 MPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
MPG F R+ D D++ +A +V QA+KGW
Sbjct: 93 MPG------------FKGRISDSDMEDVAAYVLDQAEKGW 120
>UniRef100_P51200 Cytochrome c6 precursor [Porphyra purpurea]
Length = 110
Score = 61.6 bits (148), Expect = 4e-09
Identities = 38/102 (37%), Positives = 50/102 (48%), Gaps = 14/102 (13%)
Query: 2 IAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEI-YRVTYYGK 60
+A D+ G +FS C CH G N I P TL L+ N ++ + I Y+VT
Sbjct: 22 VAFAADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNGIDAITYQVTN--- 78
Query: 61 GRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
GK MP FG RL DEDI+ A +V Q++KGW
Sbjct: 79 ------GKNAMP----AFGGRLVDEDIEDAANYVLSQSEKGW 110
>UniRef100_Q9TLW1 Cytochrome c6 precursor [Cyanidium caldarium]
Length = 109
Score = 61.6 bits (148), Expect = 4e-09
Identities = 32/101 (31%), Positives = 47/101 (45%), Gaps = 13/101 (12%)
Query: 2 IAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKG 61
+ + +++ G +FS C CH G N+I P TL + L+ N + I GK
Sbjct: 22 VVYSANLEHGEQIFSANCAACHAGGNNVIMPEKTLKAEALEANNIKNISAIANQVKNGKN 81
Query: 62 RMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
MP F +RL D DI+ +A +V +ADKGW
Sbjct: 82 AMPSF-------------SRLSDSDIEDVANYVLSKADKGW 109
>UniRef100_Q7TV27 Cytochrome c, class IC:Cytochrome c, class I [Prochlorococcus
marinus]
Length = 125
Score = 61.2 bits (147), Expect = 5e-09
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 6 IDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPG 65
+D G +LF Q C GCH GGNII+ TL K L+RNG+D + I RV G G+M G
Sbjct: 38 LDTDAGGSLFKQHCSGCHVNGGNIIRRNKTLRLKALERNGLDNPQAIARVAREGIGQMSG 97
Query: 66 FGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
+ L D +++A ++ QA W
Sbjct: 98 YEDV------------LGDSGDQLVAAWIWAQAQNAW 122
>UniRef100_P00108 Cytochrome c6 [Petalonia fascia]
Length = 85
Score = 61.2 bits (147), Expect = 5e-09
Identities = 36/98 (36%), Positives = 50/98 (50%), Gaps = 14/98 (14%)
Query: 6 IDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEI-YRVTYYGKGRMP 64
+DI G ++F+ C CH G N+I P TL L+ N ++ + I Y+VT
Sbjct: 1 VDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALEENEMNNIKSITYQVTN------- 53
Query: 65 GFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
GK MP FG RL + DI+ +A FV Q+ KGW
Sbjct: 54 --GKNAMP----AFGGRLSETDIEDVANFVISQSQKGW 85
>UniRef100_P00109 Cytochrome c6 [Alaria esculenta]
Length = 86
Score = 61.2 bits (147), Expect = 5e-09
Identities = 38/98 (38%), Positives = 49/98 (49%), Gaps = 14/98 (14%)
Query: 6 IDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEI-YRVTYYGKGRMP 64
IDI G +F+ C CH G N+I P TL L N + + I Y+VT
Sbjct: 1 IDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMVSVNAITYQVTN------- 53
Query: 65 GFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
GK MP FG+RL + DI+ +A FV Q+DKGW
Sbjct: 54 --GKNAMP----AFGSRLAETDIEDVANFVLTQSDKGW 85
>UniRef100_Q76FN8 Cytochrome c6 precursor [Hizikia fusiformis]
Length = 110
Score = 60.8 bits (146), Expect = 7e-09
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 4 QTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEI-YRVTYYGKGR 62
Q DI G +F+ C CH G N+I P TL L N +++ I Y+VT
Sbjct: 23 QAADINHGENVFTANCSACHAGGNNVIMPEKTLQKDALSTNQMNSVGAITYQVTN----- 77
Query: 63 MPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGW 102
GK MP FG RL D+DI+ +A FV Q++K W
Sbjct: 78 ----GKNAMP----AFGGRLSDDDIEDVASFVLSQSEKSW 109
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,490,198
Number of Sequences: 2790947
Number of extensions: 7651184
Number of successful extensions: 13978
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 13837
Number of HSP's gapped (non-prelim): 130
length of query: 110
length of database: 848,049,833
effective HSP length: 86
effective length of query: 24
effective length of database: 608,028,391
effective search space: 14592681384
effective search space used: 14592681384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149576.1