BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149574.9 + phase: 2 /pseudo
(88 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8LBJ5 Nucleic acid binding protein-like [Arabidopsis ... 97 1e-19
UniRef100_O81488 F9D12.13 protein [Arabidopsis thaliana] 95 5e-19
UniRef100_Q5XEM9 At5g20510 [Arabidopsis thaliana] 88 6e-17
UniRef100_Q9M9R2 F14L17.29 protein [Arabidopsis thaliana] 82 4e-15
UniRef100_Q8LA16 Nucleic acid binding protein (Alfin-1), putativ... 82 4e-15
UniRef100_Q9M2B4 Nucleic acid binding protein-like [Arabidopsis ... 80 9e-15
UniRef100_Q60DW3 Putative nucleic acid binding protein [Oryza sa... 78 6e-14
UniRef100_Q8S8M9 Putative PHD-type zinc finger protein [Arabidop... 77 8e-14
UniRef100_Q8LAH0 Putative PHD-type zinc finger protein [Arabidop... 77 8e-14
UniRef100_Q9SYW7 Nucleic acid binding protein [Oryza sativa] 72 3e-12
UniRef100_O49228 Nucleic acid binding protein [Oryza sativa] 72 3e-12
UniRef100_O49216 Nucleic acid binding protein [Oryza sativa] 71 6e-12
UniRef100_Q6Z7F4 Putative nucleic acid binding protein [Oryza sa... 69 2e-11
UniRef100_Q40359 Alfin-1 [Medicago sativa] 68 5e-11
UniRef100_Q94LL0 Putative nucleic acid binding protein [Oryza sa... 66 2e-10
UniRef100_Q6YTY3 Putative nucleic acid binding protein [Oryza sa... 66 2e-10
UniRef100_Q9SRM4 Putative nucleic acid binding protein [Arabidop... 61 6e-09
UniRef100_Q6Q7P5 Nucleic acid-binding protein [Lycopersicon escu... 60 2e-08
UniRef100_Q9FFF5 Nucleic acid binding protein-like [Arabidopsis ... 57 9e-08
UniRef100_Q75IR6 Putative nucleic acid binding (PHD-finger) prot... 54 9e-07
>UniRef100_Q8LBJ5 Nucleic acid binding protein-like [Arabidopsis thaliana]
Length = 255
Score = 97.1 bits (240), Expect = 1e-19
Identities = 51/95 (53%), Positives = 68/95 (70%), Gaps = 9/95 (9%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF +NDLPTIFEVV G+AKKQ K+K SVS+++SN+SKS SK AK+SKP K+
Sbjct: 121 KRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKD 180
Query: 61 DD-------EEVDDEEEYQGECTACGENYVSASDE 88
D+ EE D++E+ + +C ACGE+Y A+DE
Sbjct: 181 DEEEEEEGVEEEDEDEQGETQCGACGESY--AADE 213
>UniRef100_O81488 F9D12.13 protein [Arabidopsis thaliana]
Length = 251
Score = 94.7 bits (234), Expect = 5e-19
Identities = 55/102 (53%), Positives = 72/102 (69%), Gaps = 16/102 (15%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSK------ARGSE-LAKY 53
KRLF +NDLPTIFEVV G+AKKQ K+K SVS+++SN+SKS SK RGSE AK+
Sbjct: 110 KRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKVETLFSTRGSESRAKF 169
Query: 54 SKPPAKEDD-------EEVDDEEEYQGECTACGENYVSASDE 88
SKP K+D+ EE D++E+ + +C ACGE+Y A+DE
Sbjct: 170 SKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESY--AADE 209
>UniRef100_Q5XEM9 At5g20510 [Arabidopsis thaliana]
Length = 260
Score = 87.8 bits (216), Expect = 6e-17
Identities = 51/100 (51%), Positives = 68/100 (68%), Gaps = 15/100 (15%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKP---- 56
KRLF+ IN++PT++EVVTG+A+KQTKE PS ++ N N+SKS SK RG E +K SK
Sbjct: 122 KRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRGLE-SKSSKTIHAK 180
Query: 57 ------PAKEDDEEVDDEEEYQGE--CTACGENYVSASDE 88
+E +EE D++E+ GE C ACG+NY ASDE
Sbjct: 181 DEEEGLELEEGEEEEDEDEDEHGETLCGACGDNY--ASDE 218
>UniRef100_Q9M9R2 F14L17.29 protein [Arabidopsis thaliana]
Length = 273
Score = 81.6 bits (200), Expect = 4e-15
Identities = 48/88 (54%), Positives = 60/88 (67%), Gaps = 9/88 (10%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSK-SGSKARGSE----LAKYSK 55
KRLF INDLPTIFEVVTG+AK + K ++HNS++SK SG K R SE +K S
Sbjct: 142 KRLFQMINDLPTIFEVVTGNAK---QSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSP 198
Query: 56 PPAKEDDEEVDDEEEYQGE-CTACGENY 82
PP KED+ +DE++ QG C ACG+NY
Sbjct: 199 PPRKEDESGDEDEDDEQGAVCGACGDNY 226
>UniRef100_Q8LA16 Nucleic acid binding protein (Alfin-1), putative [Arabidopsis
thaliana]
Length = 252
Score = 81.6 bits (200), Expect = 4e-15
Identities = 48/88 (54%), Positives = 60/88 (67%), Gaps = 9/88 (10%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSK-SGSKARGSE----LAKYSK 55
KRLF INDLPTIFEVVTG+AK + K ++HNS++SK SG K R SE +K S
Sbjct: 121 KRLFQMINDLPTIFEVVTGNAK---QSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSP 177
Query: 56 PPAKEDDEEVDDEEEYQGE-CTACGENY 82
PP KED+ +DE++ QG C ACG+NY
Sbjct: 178 PPRKEDESGDEDEDDEQGAVCGACGDNY 205
>UniRef100_Q9M2B4 Nucleic acid binding protein-like [Arabidopsis thaliana]
Length = 250
Score = 80.5 bits (197), Expect = 9e-15
Identities = 46/84 (54%), Positives = 56/84 (65%), Gaps = 5/84 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF IND+PTIFEVVTG AK K+K S ++ N NKSKS SK R SE KE
Sbjct: 122 KRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKE 179
Query: 61 DDEEVD-DEEEYQGE--CTACGEN 81
+DEE+D D+E+ GE C ACG++
Sbjct: 180 EDEEIDEDDEDDHGETLCGACGDS 203
>UniRef100_Q60DW3 Putative nucleic acid binding protein [Oryza sativa]
Length = 258
Score = 77.8 bits (190), Expect = 6e-14
Identities = 45/84 (53%), Positives = 55/84 (64%), Gaps = 5/84 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPA-- 58
+RLF IN+LPTIFEVVTG+AKKQTKEK S++ NK S + R +K KPPA
Sbjct: 123 RRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPAPP 182
Query: 59 KEDDEEVD---DEEEYQGECTACG 79
K+DDE D DEEE + + T CG
Sbjct: 183 KDDDESGDEYADEEEEERDNTLCG 206
>UniRef100_Q8S8M9 Putative PHD-type zinc finger protein [Arabidopsis thaliana]
Length = 256
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 12/92 (13%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE----LAKYSKP 56
KRLF IN+LPTIFEVV+G+A KQ+K+ SV+++NS SG K+R SE +AK S P
Sbjct: 121 KRLFQMINELPTIFEVVSGNA-KQSKDL-SVNNNNSKSKPSGVKSRQSESLSKVAKMSSP 178
Query: 57 PAKEDDEEVDD-----EEEYQGE-CTACGENY 82
P KE++EE D+ E++ QG C ACG+NY
Sbjct: 179 PPKEEEEEEDESEDESEDDEQGAVCGACGDNY 210
>UniRef100_Q8LAH0 Putative PHD-type zinc finger protein [Arabidopsis thaliana]
Length = 256
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 12/92 (13%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE----LAKYSKP 56
KRLF IN+LPTIFEVV+G+A KQ+K+ SV+++NS SG K+R SE +AK S P
Sbjct: 121 KRLFQMINELPTIFEVVSGNA-KQSKDL-SVNNNNSKSKPSGVKSRQSESLTKVAKMSSP 178
Query: 57 PAKEDDEEVDD-----EEEYQGE-CTACGENY 82
P KE++EE D+ E++ QG C ACG+NY
Sbjct: 179 PPKEEEEEEDESEDESEDDEQGAVCGACGDNY 210
>UniRef100_Q9SYW7 Nucleic acid binding protein [Oryza sativa]
Length = 273
Score = 72.4 bits (176), Expect = 3e-12
Identities = 44/87 (50%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNK--SKSGSKARGSELAKYSKPPA 58
+RLF IN+LPTIFEVVTG+AKKQ KEK SS SNK SK SKA +K S P
Sbjct: 140 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKD 199
Query: 59 KE---DDEEVDDEEEYQGE-CTACGEN 81
+E DDE ++E+++ C CG N
Sbjct: 200 EEGSGDDEGEEEEDDHDNTLCGTCGTN 226
>UniRef100_O49228 Nucleic acid binding protein [Oryza sativa]
Length = 272
Score = 72.4 bits (176), Expect = 3e-12
Identities = 44/87 (50%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNK--SKSGSKARGSELAKYSKPPA 58
+RLF IN+LPTIFEVVTG+AKKQ KEK SS SNK SK SKA +K S P
Sbjct: 139 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKD 198
Query: 59 KE---DDEEVDDEEEYQGE-CTACGEN 81
+E DDE ++E+++ C CG N
Sbjct: 199 EEGSGDDEGEEEEDDHDNTLCGTCGTN 225
>UniRef100_O49216 Nucleic acid binding protein [Oryza sativa]
Length = 271
Score = 71.2 bits (173), Expect = 6e-12
Identities = 43/86 (50%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNK-SKSGSKARGSELAKYSKPPAK 59
+RLF IN+LPTIFEVVTG+AKKQ KEK SS SNK S SKA +K S P +
Sbjct: 139 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVSKAESRSKSKLSAPKDE 198
Query: 60 E---DDEEVDDEEEYQGE-CTACGEN 81
E DDE ++E+++ C CG N
Sbjct: 199 EGSGDDEGEEEEDDHDNTLCGTCGTN 224
>UniRef100_Q6Z7F4 Putative nucleic acid binding protein [Oryza sativa]
Length = 267
Score = 69.3 bits (168), Expect = 2e-11
Identities = 40/88 (45%), Positives = 53/88 (59%), Gaps = 6/88 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
+RLFT IN LPT++EVVTG AKKQT K S S SNKS + + +K +KPP +
Sbjct: 138 RRLFTMINGLPTVYEVVTGIAKKQT--KVSNGSSKSNKSNPKPSKQSNSNSKPAKPPQPK 195
Query: 61 DDE----EVDDEEEYQGECTACGENYVS 84
D+E E ++E+ C ACGE Y +
Sbjct: 196 DEEDSGPEGTEDEDQAYMCGACGETYAN 223
>UniRef100_Q40359 Alfin-1 [Medicago sativa]
Length = 257
Score = 68.2 bits (165), Expect = 5e-11
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSEL----AKYSKP 56
KRLF INDLPT+FE+ TG+AK+ + + ++ +++K KS K+R SE K S P
Sbjct: 122 KRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAP 181
Query: 57 PAKEDD---EEVDDEEEYQGECTACGENY 82
+E D EE +D++E C ACG+NY
Sbjct: 182 VKEEVDSGEEEEEDDDEQGATCGACGDNY 210
>UniRef100_Q94LL0 Putative nucleic acid binding protein [Oryza sativa]
Length = 369
Score = 65.9 bits (159), Expect = 2e-10
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 25/104 (24%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE-LAKYSK---- 55
KRLF INDLPTIFEVV+G +K + PS ++H+++KSKS +K + SE AK K
Sbjct: 119 KRLFGMINDLPTIFEVVSGKSK---AKPPSANNHSNSKSKSSNKTKSSEPRAKQPKPQPQ 175
Query: 56 PPAKEDDEE----VDDE-----------EEYQGE--CTACGENY 82
PP K + E DDE EE GE C ACGE+Y
Sbjct: 176 PPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACGESY 219
>UniRef100_Q6YTY3 Putative nucleic acid binding protein [Oryza sativa]
Length = 278
Score = 65.9 bits (159), Expect = 2e-10
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 25/104 (24%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE-LAKYSK---- 55
KRLF INDLPTIFEVV+G +K + PS ++H+++KSKS +K + SE AK K
Sbjct: 119 KRLFGMINDLPTIFEVVSGKSK---AKPPSANNHSNSKSKSSNKTKSSEPRAKQPKPQPQ 175
Query: 56 PPAKEDDEE----VDDE-----------EEYQGE--CTACGENY 82
PP K + E DDE EE GE C ACGE+Y
Sbjct: 176 PPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACGESY 219
>UniRef100_Q9SRM4 Putative nucleic acid binding protein [Arabidopsis thaliana]
Length = 246
Score = 61.2 bits (147), Expect = 6e-09
Identities = 36/86 (41%), Positives = 52/86 (59%), Gaps = 5/86 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF+ INDLPT+F+VVTG K KP SS + +KS++G+K K S P E
Sbjct: 120 KRLFSLINDLPTLFDVVTG-RKAMKDNKP--SSDSGSKSRNGTKRSIDGQTKSSTPKLME 176
Query: 61 DDEEVDDEEEYQGE--CTACGENYVS 84
+ E ++EE+ G+ C +CG +Y +
Sbjct: 177 ESYEEEEEEDEHGDTLCGSCGGHYTN 202
>UniRef100_Q6Q7P5 Nucleic acid-binding protein [Lycopersicon esculentum]
Length = 245
Score = 59.7 bits (143), Expect = 2e-08
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 2 RLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKED 61
R+FT INDLPT+FE VTG +K K+KPSV S KSK+ +K A +D
Sbjct: 121 RVFTLINDLPTVFEAVTG--RKPLKDKPSVDS--GKKSKNNAKREKQMKANQRLQEESDD 176
Query: 62 DEEVDDEEEYQGECTACGEN 81
++E +++E + C +CG N
Sbjct: 177 EDEGNEDEHEETLCGSCGTN 196
>UniRef100_Q9FFF5 Nucleic acid binding protein-like [Arabidopsis thaliana]
Length = 241
Score = 57.4 bits (137), Expect = 9e-08
Identities = 38/85 (44%), Positives = 51/85 (59%), Gaps = 6/85 (7%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKE-KPSVSSHNSNKSKSGSKARGSELAKYSKPPAK 59
KRLF+ INDLPT+FEVVTG +K K+ KPS+ +KS++G K R E S P
Sbjct: 118 KRLFSLINDLPTLFEVVTG--RKPIKDGKPSMDL--GSKSRNGVK-RSIEGQTKSTPKLM 172
Query: 60 EDDEEVDDEEEYQGECTACGENYVS 84
E+ E +D+E C +CG NY +
Sbjct: 173 EESYEDEDDEHGDTLCGSCGGNYTN 197
>UniRef100_Q75IR6 Putative nucleic acid binding (PHD-finger) protein [Oryza sativa]
Length = 258
Score = 53.9 bits (128), Expect = 9e-07
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF +NDLPT++EVV+GS +Q+KE+ NS+++K SK S++A+ KE
Sbjct: 133 KRLFGMMNDLPTVYEVVSGS--RQSKERDRSGMDNSSRNKISSK-HTSDVARVEN-NIKE 188
Query: 61 DDEEVDDEEEYQGE--CTACGENY 82
+DE D+++ E C CG Y
Sbjct: 189 EDEGYDEDDGDHSETLCGTCGGIY 212
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.299 0.121 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,740,572
Number of Sequences: 2790947
Number of extensions: 5887363
Number of successful extensions: 43137
Number of sequences better than 10.0: 349
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 42112
Number of HSP's gapped (non-prelim): 837
length of query: 88
length of database: 848,049,833
effective HSP length: 64
effective length of query: 24
effective length of database: 669,429,225
effective search space: 16066301400
effective search space used: 16066301400
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149574.9