BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149307.10 + phase: 0 /pseudo
(114 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_O23757 Reverse transcriptase [Beta vulgaris subsp. vul... 62 2e-09
UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa] 46 2e-04
UniRef100_Q7X6R8 OSJNBa0071G03.15 protein [Oryza sativa] 46 2e-04
UniRef100_Q9MAS1 F28H19.1 protein [Arabidopsis thaliana] 45 3e-04
UniRef100_Q9MA67 F2J6.14 protein [Arabidopsis thaliana] 45 3e-04
UniRef100_Q7XT18 OSJNBb0050O03.4 protein [Oryza sativa] 45 5e-04
UniRef100_Q7XVG0 OSJNBb0118P14.10 protein [Oryza sativa] 42 0.003
UniRef100_Q7Y1N3 Putative reverse transcriptase [Oryza sativa] 42 0.003
UniRef100_Q84Q63 Putative reverse transcriptase [Oryza sativa] 42 0.003
UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa] 42 0.003
UniRef100_Q7XKK3 OSJNBa0038O10.4 protein [Oryza sativa] 42 0.004
UniRef100_Q7XUD8 OSJNBa0088A01.7 protein [Oryza sativa] 41 0.007
UniRef100_Q7XK75 OSJNBa0028M15.12 protein [Oryza sativa] 41 0.007
UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa] 40 0.013
UniRef100_Q7XW91 OSJNBb0043H09.5 protein [Oryza sativa] 40 0.013
UniRef100_Q9SY58 F14N23.4 [Arabidopsis thaliana] 40 0.016
UniRef100_Q75IE7 Hypothetical protein OJ1123_D06.9 [Oryza sativa] 40 0.016
UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcrip... 40 0.016
UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor] 39 0.022
UniRef100_Q65WR1 Putative polyprotein [Oryza sativa] 39 0.028
>UniRef100_O23757 Reverse transcriptase [Beta vulgaris subsp. vulgaris]
Length = 507
Score = 62.4 bits (150), Expect = 2e-09
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSD 78
F FI++ L++ FTW+RG S SKLDR + +++P+ L+ SD
Sbjct: 34 FQNFINNMGLIEISPIKGFFTWFRGQ--SKSKLDRLFVQPEWLTSFPSLKLNILKRSPSD 91
Query: 79 HVHMVLRVDEENWGPRPLRMLKCWANFP 106
H ++ +NWGP+P R L CW P
Sbjct: 92 HCPLLAFSSHQNWGPKPFRFLNCWLTHP 119
>UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa]
Length = 3331
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/91 (30%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F + ID+ L + P+ GR FTW + ++ KLDR L S + +P+C+ A S S
Sbjct: 835 FRRLIDELELRELPLDGRRFTWSNERESPTLVKLDRVLFSADWEELFPSCLLQAASSIAS 894
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH ++L + R W F G+
Sbjct: 895 DHCALLLHTCVTSPKAHRFRFEAFWPKFDGF 925
>UniRef100_Q7X6R8 OSJNBa0071G03.15 protein [Oryza sativa]
Length = 637
Score = 45.8 bits (107), Expect = 2e-04
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYR-GDGYSMSKLDRFLLSDNCYSTWPNCIQIAL 72
+D IFN+ I L++ P+ GR FTW + +LD S + T+PN I L
Sbjct: 102 NDIFIFNEIISSLGLLEIPLKGRRFTWSNMQQNPLLERLDWVFTSASWTLTFPNTTVIPL 161
Query: 73 QSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
+SDHV V+++D + R W G+
Sbjct: 162 TRNISDHVPCVVKIDTKIPKSPIFRFENFWVEAEGF 197
>UniRef100_Q9MAS1 F28H19.1 protein [Arabidopsis thaliana]
Length = 668
Score = 45.4 bits (106), Expect = 3e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 19 FNKFIDDSFLVDFPICGRLFTW--YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
F + DS LVD P G +TW ++ D + KLDR + + + +S++P+ I + SG+
Sbjct: 188 FQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGV 247
Query: 77 SDHVHMVLRVDEENWGPRPLRMLKCWANF 105
SDH ++ ++ P R KC+ F
Sbjct: 248 SDHSPCIIILEN-----LPKRSKKCFRYF 271
>UniRef100_Q9MA67 F2J6.14 protein [Arabidopsis thaliana]
Length = 602
Score = 45.4 bits (106), Expect = 3e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 19 FNKFIDDSFLVDFPICGRLFTW--YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
F + DS LVD P G +TW ++ D + KLDR + + + +S++P+ I + SG+
Sbjct: 188 FQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGV 247
Query: 77 SDHVHMVLRVDEENWGPRPLRMLKCWANF 105
SDH ++ ++ P R KC+ F
Sbjct: 248 SDHSPCIIILEN-----LPKRSKKCFRYF 271
>UniRef100_Q7XT18 OSJNBb0050O03.4 protein [Oryza sativa]
Length = 1199
Score = 44.7 bits (104), Expect = 5e-04
Identities = 28/97 (28%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F + +D+ L + P GR FTW + ++ KLDR L S + +P+C+ A S S
Sbjct: 513 FRRLVDELELRELPPHGRRFTWSNERESPTLVKLDRVLFSADWEELFPSCLLQAASSIAS 572
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVRE 114
DH ++L + R W F G+ V++
Sbjct: 573 DHCALLLHTCVTSPKAHCFRFEAFWPKFDGFLQVVQD 609
>UniRef100_Q7XVG0 OSJNBb0118P14.10 protein [Oryza sativa]
Length = 934
Score = 42.4 bits (98), Expect = 0.003
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 18 IFNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
+FN I+++ L + + G+ FTW ++ KLDR L +D +P L+
Sbjct: 617 MFNSIIENANLREMALEGKKFTWANNKQSVTLEKLDRILFNDKWEIKFPLACGRVLERIY 676
Query: 77 SDHVHMVLRVDEENW 91
SDH +++ V+ E W
Sbjct: 677 SDHTPLLINVEGEKW 691
>UniRef100_Q7Y1N3 Putative reverse transcriptase [Oryza sativa]
Length = 502
Score = 42.0 bits (97), Expect = 0.003
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYR-GDGYSMSKLDRFLLSDNCYSTWPNCIQIAL 72
+D +FN I + L++ P+ R FTW D + +LD +S + ++PN + +++
Sbjct: 2 NDIFLFNDMISNLGLIEIPLKDRSFTWSNMHDSPLLEQLDWVFISPSWLISYPNTLALSM 61
Query: 73 QSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
+SDHV + ++V R W G+
Sbjct: 62 IKHISDHVPLKVQVQTAIPRANVCRFENFWVQHEGF 97
>UniRef100_Q84Q63 Putative reverse transcriptase [Oryza sativa]
Length = 870
Score = 42.0 bits (97), Expect = 0.003
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F ID L + P+ R FTW + + KLDR ++ +P+ + AL +G S
Sbjct: 168 FRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPS 227
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH +VL + PR + W PG+
Sbjct: 228 DHCPLVLSNPQGPHRPRTFKFENFWTRVPGF 258
>UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]
Length = 1189
Score = 42.0 bits (97), Expect = 0.003
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F ID L + P+ R FTW + + KLDR ++ +P+ + AL +G S
Sbjct: 168 FRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPS 227
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH +VL + PR + W PG+
Sbjct: 228 DHYPLVLSNPQGPHRPRTFKFENFWTRVPGF 258
>UniRef100_Q7XKK3 OSJNBa0038O10.4 protein [Oryza sativa]
Length = 1045
Score = 41.6 bits (96), Expect = 0.004
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F ID L + P+ R FTW + ++ KLDR ++N + + + AL +G S
Sbjct: 168 FRATIDRCELHEIPLQNRRFTWSNERQWPTLVKLDRCFCNENWDLAFHHHVLHALPTGPS 227
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVR 113
DH +VL PR R W PG+ V+
Sbjct: 228 DHCPLVLSNPAAPRKPRTFRFENFWTCIPGFKDMVK 263
>UniRef100_Q7XUD8 OSJNBa0088A01.7 protein [Oryza sativa]
Length = 1324
Score = 40.8 bits (94), Expect = 0.007
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F I+ L + + R FTW + +M +LDRF ++N + + I L SG S
Sbjct: 620 FRAAINHCELKEIHLQNRKFTWTNERRHPTMVRLDRFFCNENWDLAFGHHILHTLSSGTS 679
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH ++L + PR + W PG+
Sbjct: 680 DHCPLLLSNPQGPQRPRTFKFENFWTKLPGF 710
>UniRef100_Q7XK75 OSJNBa0028M15.12 protein [Oryza sativa]
Length = 1200
Score = 40.8 bits (94), Expect = 0.007
Identities = 27/68 (39%), Positives = 35/68 (50%), Gaps = 2/68 (2%)
Query: 18 IFNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
+FN ID SF + + GR FTW + KLDR L+S S +P AL GL
Sbjct: 916 LFNAVID-SFDLRVDLTGRQFTWANSLSSPTFEKLDRVLMSTEWESKYPLVSVHALDRGL 974
Query: 77 SDHVHMVL 84
SDH ++L
Sbjct: 975 SDHTPLLL 982
>UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa]
Length = 710
Score = 40.0 bits (92), Expect = 0.013
Identities = 24/68 (35%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Query: 18 IFNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
+FN ID L + + GR FTW + KLDR L+S +P AL L
Sbjct: 259 LFNAVIDSLDLRELELTGRKFTWANSSSKPTFEKLDRILMSTEWEQKYPLSTARALSREL 318
Query: 77 SDHVHMVL 84
SDH ++L
Sbjct: 319 SDHTPLLL 326
>UniRef100_Q7XW91 OSJNBb0043H09.5 protein [Oryza sativa]
Length = 858
Score = 40.0 bits (92), Expect = 0.013
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIAL 72
+D +FN+ I + L + P+ GR +TW + +LD F S + +PN + AL
Sbjct: 2 NDIMVFNELISNIDLQELPLKGRTYTWSNMQSQPLLQQLDWFFTSPSWTVLYPNTMVTAL 61
Query: 73 QSGLSDHVHMVLRVDEENWGPRP--LRMLKCWANFPGYALFVR 113
+SDH E P+ R W PG+ V+
Sbjct: 62 SKCISDHT----PYPSETTVPKTDIFRFENFWVELPGFIEVVK 100
>UniRef100_Q9SY58 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 39.7 bits (91), Expect = 0.016
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 2/67 (2%)
Query: 25 DSFLVDFPICGRLFTW--YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHM 82
DS L D P G FTW ++ D + KLDR L + ++ +P+ + + G SDH
Sbjct: 217 DSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPC 276
Query: 83 VLRVDEE 89
++ +D +
Sbjct: 277 IILIDNQ 283
>UniRef100_Q75IE7 Hypothetical protein OJ1123_D06.9 [Oryza sativa]
Length = 961
Score = 39.7 bits (91), Expect = 0.016
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 SSFRQHDADIFNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNC 67
S+F +FN ID L++ + GR FTW + KLDR L+S +P
Sbjct: 789 SNFDDRWPFLFNAIIDGLCLMELQMSGRNFTWANNLANPTYEKLDRVLMSTEWEHNFPLA 848
Query: 68 IQIALQSGLSDHVHMVLRVDEEN 90
+AL +S+H ++L + +
Sbjct: 849 SVVALNRDISNHTPLLLNTNSSS 871
>UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1614
Score = 39.7 bits (91), Expect = 0.016
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 1/69 (1%)
Query: 17 DIFNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSG 75
D+FNKFI D L + I G FTW + LDR L+SD+ +PN + ++
Sbjct: 781 DMFNKFISDLDLREVHIIGPKFTWTNKQYCPTQEVLDRILVSDDWDDRYPNSLISSVLRV 840
Query: 76 LSDHVHMVL 84
SDH ++L
Sbjct: 841 GSDHTPLLL 849
>UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor]
Length = 1323
Score = 39.3 bits (90), Expect = 0.022
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F + +D S L++ + R +TW G ++ LDR + + +P+ IAL S LS
Sbjct: 360 FRQALDASELLEIKLQNRKYTWSNGRKNPTLVHLDRAFCNLDWDEIFPSATLIALSSSLS 419
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVR 113
DH + L ++ + W PG+ V+
Sbjct: 420 DHCPLFLCNQQQPHRRATFKFESFWVRVPGFLQIVQ 455
>UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]
Length = 1023
Score = 38.9 bits (89), Expect = 0.028
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 23 IDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVH 81
ID L + P+ R FTW + + KLDR ++ +P+ + A +G SDH
Sbjct: 6 IDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHAFPTGPSDHCP 65
Query: 82 MVLRVDEENWGPRPLRMLKCWANFPGY 108
+VL + PR + W PG+
Sbjct: 66 LVLSNPQGPHRPRTFKFENFWTRVPGF 92
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.327 0.142 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,441,961
Number of Sequences: 2790947
Number of extensions: 7628685
Number of successful extensions: 16466
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 16428
Number of HSP's gapped (non-prelim): 74
length of query: 114
length of database: 848,049,833
effective HSP length: 90
effective length of query: 24
effective length of database: 596,864,603
effective search space: 14324750472
effective search space used: 14324750472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC149307.10