BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149305.9 - phase: 0 /pseudo
(136 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 74 7e-13
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 67 1e-10
UniRef100_Q9LS77 Similarity to non-LTR retroelement reverse tran... 65 3e-10
UniRef100_Q9LDL8 Hypothetical protein AT4g08830 [Arabidopsis tha... 65 4e-10
UniRef100_Q8H992 Oryza sativa (japonica cultivar-group) retrotra... 65 4e-10
UniRef100_O23410 STRONG homology to reverse transcriptase [Arabi... 64 7e-10
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 63 2e-09
UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like... 63 2e-09
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 62 3e-09
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 60 1e-08
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 60 1e-08
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 59 3e-08
UniRef100_O81441 T24H24.17 protein [Arabidopsis thaliana] 59 3e-08
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 58 4e-08
UniRef100_Q75M21 Hypothetical protein P0668H12.17 [Oryza sativa] 58 4e-08
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip... 58 4e-08
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 58 4e-08
UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sat... 58 5e-08
UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa] 57 9e-08
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 57 1e-07
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 73.9 bits (180), Expect = 7e-13
Identities = 41/116 (35%), Positives = 65/116 (55%), Gaps = 3/116 (2%)
Query: 20 LINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K* 79
L +LA WK R L+ RV L +VL+SIP + M +A +D L+K SF+
Sbjct: 297 LTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMST--IALPKSTLDGLDKVSRSFLWGS 354
Query: 80 S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
S T + +++ W ++ K + GGLG+R + N ALL K+ W L+ + LW++I+
Sbjct: 355 SVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIM 410
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 66.6 bits (161), Expect = 1e-10
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+LA WK R L+ R+ L +VL+SIP + M L + +D L++ +F+ +
Sbjct: 638 RLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLP--VSTLDTLDRYSRTFLWGSTME 695
Query: 83 KG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K +++ W KI K K GG+G+R R N AL+ K+ W LL LW++++
Sbjct: 696 KKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVV 748
>UniRef100_Q9LS77 Similarity to non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana]
Length = 170
Score = 65.1 bits (157), Expect = 3e-10
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
K+ S V L N++ W + L+K + +++ V T++P Y M L I L
Sbjct: 17 KMFSFVRDRLQNRINGWSAKFLSKGGKEVMIKLVATALPTYVMSCFTLPKTIT--SKLTS 74
Query: 71 TVHSFI*K*S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHL 129
+ F + ++GM+ + WDK+ +K GGLG R V N ALL K +W L+ N L
Sbjct: 75 AIPKFWWSSNGESRGMHWMAWDKVCYSKSEGGLGFRSVDNFNSALLAKQLWRLITVPNSL 134
Query: 130 WSQI 133
++++
Sbjct: 135 FARV 138
>UniRef100_Q9LDL8 Hypothetical protein AT4g08830 [Arabidopsis thaliana]
Length = 947
Score = 64.7 bits (156), Expect = 4e-10
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 22 NKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*ST 81
++LA WK R L+ R+ L SVL+ IP + M L ++ L+K F+ S
Sbjct: 451 SRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQ--STLEGLDKLARVFLLGSSA 508
Query: 82 NKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K +++V WD++ K GGLG+R + N AL+ K+ W L+ LW++IL
Sbjct: 509 EKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARIL 562
>UniRef100_Q8H992 Oryza sativa (japonica cultivar-group) retrotransposon Karma DNA,
complete sequence [Oryza sativa]
Length = 1197
Score = 64.7 bits (156), Expect = 4e-10
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 24 LASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*S-TN 82
L W+ LL++ R+ILVN+VL+S+P Y M L VI+ ++K +F T
Sbjct: 780 LTGWEASLLSQAERLILVNAVLSSVPVYAMSAFKLPPK--VIEAIDKRRRAFFWTGDDTC 837
Query: 83 KGMN-MVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMP----TNHLWSQ 132
G +V WD++ AK+ GGLG++ ++ QN ALL K ++NL TN +W +
Sbjct: 838 SGAKCLVAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFSDNSSWTNWIWKE 892
>UniRef100_O23410 STRONG homology to reverse transcriptase [Arabidopsis thaliana]
Length = 929
Score = 63.9 bits (154), Expect = 7e-10
Identities = 37/114 (32%), Positives = 62/114 (53%), Gaps = 3/114 (2%)
Query: 22 NKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*ST 81
++L+ WK R L+ R+ L +VL SIP + M L +++ L+K +F+ +
Sbjct: 572 SRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLP--ASLLEQLDKVSRNFLWGSTV 629
Query: 82 NKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K +++ W K+ + K GGLG+R + N ALL K+ W LL LW+++L
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVL 683
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 62.8 bits (151), Expect = 2e-09
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+ ASW + L+ + IL+ SV ++P Y M L I + + + +F + ++N
Sbjct: 396 RTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGI--VSEIESLLMNFWWEKASN 453
Query: 83 K-GMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
K G+ V W ++ +KK GGLG R + K N ALL K W ++ N L+++++ A
Sbjct: 454 KRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKA 508
>UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1197
Score = 62.8 bits (151), Expect = 2e-09
Identities = 38/113 (33%), Positives = 58/113 (50%), Gaps = 3/113 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*-K*ST 81
K SW R L+ + +++ SVLT+IP Y M L +C D + T+ F K
Sbjct: 605 KAISWSSRFLSGAGKQVMLQSVLTAIPVYAMSCFLLPLSLC--DRIQSTLTRFWWDKTDQ 662
Query: 82 NKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
+ M VGWD++ K GGLG + + N+ALL K W +L + L +++L
Sbjct: 663 QRKMCWVGWDRLAVPKVRGGLGFKNFKAYNVALLAKQSWRVLPHPSCLLARVL 715
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 62.0 bits (149), Expect = 3e-09
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
K+ S V L +++ W + L+K + +++ SV ++P Y M L + L
Sbjct: 547 KVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPK--AITSKLTS 604
Query: 71 TVHSFI*K*S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHL 129
V F + ++GM+ + WDK+ +K +GGLG R V N ALL K +W L+ + L
Sbjct: 605 AVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSL 664
Query: 130 WSQI 133
++++
Sbjct: 665 FAKV 668
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 60.1 bits (144), Expect = 1e-08
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+ ++W R L+ + I++ SV ++P Y M L I + + + +F + ++N
Sbjct: 1157 RTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGI--VSEIESLLMNFWWEKASN 1214
Query: 83 -KGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
+G+ V W ++ +KK GGLG R + K N ALL K W L+ N L+++++ A
Sbjct: 1215 QRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1269
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 60.1 bits (144), Expect = 1e-08
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+ ++W R L+ + I++ SV ++P Y M L I + + + +F + ++N
Sbjct: 931 RTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGI--VSEIESLLMNFWWEKASN 988
Query: 83 -KGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
+G+ V W ++ +KK GGLG R + K N ALL K W L+ N L+++++ A
Sbjct: 989 QRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1043
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/128 (29%), Positives = 67/128 (51%), Gaps = 5/128 (3%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
K+ S + + ++ WK +LL++ + IL+ +V IP + M L +C D ++K
Sbjct: 964 KIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLC--DQISK 1021
Query: 71 TVHSF--I*K*STNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNH 128
+ + + NK M+ + W+K+T K GGLG R + N+A+L K W L+ +
Sbjct: 1022 MIAKYWWSNQEKDNK-MHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDS 1080
Query: 129 LWSQILSA 136
L S++L A
Sbjct: 1081 LCSRVLRA 1088
>UniRef100_O81441 T24H24.17 protein [Arabidopsis thaliana]
Length = 1077
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/123 (30%), Positives = 62/123 (49%), Gaps = 1/123 (0%)
Query: 12 LISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKT 71
L + + + + SW R L+ ++ ++ SVL+++P Y M L +C T
Sbjct: 699 LFTAIVDRIKQRALSWSSRFLSSAGKLTMLKSVLSTMPTYTMSCFQLPLSLCKRIQSTLT 758
Query: 72 VHSFI*K*STNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWS 131
+ K K M+ + W K+T + K+GGLG R V+ N ALL KL W LL + L +
Sbjct: 759 RFWWDSKPDQRK-MSWISWQKMTLSFKSGGLGFRDVQTFNKALLAKLSWRLLQNPSCLLA 817
Query: 132 QIL 134
++L
Sbjct: 818 KLL 820
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 58.2 bits (139), Expect = 4e-08
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 1 EKTNHFNIIFKLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAH 60
+K + FN I + + + +SW + L+ + I++ SV S+P Y M L
Sbjct: 1122 KKRDMFNYIIERVK-------KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLP- 1173
Query: 61 YICVIDHLNKTVHSFI*K*STNKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLV 119
+ ++ + + +F + + K + + W ++ +KK GGLG R + K N ALL K V
Sbjct: 1174 -LNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQV 1232
Query: 120 WNLLMPTNHLWSQILSA 136
W ++ N L+++I+ A
Sbjct: 1233 WRMINNPNSLFARIMKA 1249
>UniRef100_Q75M21 Hypothetical protein P0668H12.17 [Oryza sativa]
Length = 959
Score = 58.2 bits (139), Expect = 4e-08
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 13 ISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTV 72
I L+ L LA WK +LL+ +R+ L+ VL ++P Y M + L + I+ + K
Sbjct: 773 IQLMMDRLAKNLAGWKPKLLSPDARLALIKHVLMALPLYFMSVLELPAW--AINEIEKKC 830
Query: 73 HSFI*K*STNKG--MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLW 130
FI K + ++V W+K+ + + GGLG+R +R IAL + +W W
Sbjct: 831 WGFIWKGDEDAAGSCSLVAWEKLCLSIEQGGLGIRNLRLMGIALRTRWIWLCRAEPECSW 890
Query: 131 SQI 133
++I
Sbjct: 891 TRI 893
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 58.2 bits (139), Expect = 4e-08
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 16 VCGFLINKLA----SWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKT 71
+ G +I+K+ SW R L++ + +++ +VL S+P Y M L +C T
Sbjct: 659 IFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLT 718
Query: 72 VHSFI*K*STNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWS 131
+ K K + V W K+T K GGLG R + + N +LL KL W LL L S
Sbjct: 719 RFWWDTKPDVRK-TSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLS 777
Query: 132 QIL 134
+IL
Sbjct: 778 RIL 780
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 58.2 bits (139), Expect = 4e-08
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 1 EKTNHFNIIFKLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAH 60
+K + FN I + + + +SW + L+ + I++ SV S+P Y M L
Sbjct: 1142 KKRDMFNYIIERVK-------KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLP- 1193
Query: 61 YICVIDHLNKTVHSFI*K*STNKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLV 119
+ ++ + + +F + + K + + W ++ +KK GGLG R + K N ALL K V
Sbjct: 1194 -LNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQV 1252
Query: 120 WNLLMPTNHLWSQILSA 136
W ++ N L+++I+ A
Sbjct: 1253 WRMINNPNSLFARIMKA 1269
>UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sativa]
Length = 1264
Score = 57.8 bits (138), Expect = 5e-08
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
++ W+ +LL+K + ILV +V +IP Y M L +C D +N + + +
Sbjct: 1123 RIQGWQEKLLSKAGKEILVKAVAQAIPTYAMSCFDLTKGLC--DEINSMISKWWWSQNDK 1180
Query: 83 KG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQI 133
+ ++ + W+K+T KK GG G R + N+A+L + W LL+ + L Q+
Sbjct: 1181 ENKIHWLSWEKMTLPKKLGGPGFRDLHLFNMAMLARQAWRLLLNVDSLCGQV 1232
>UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]
Length = 1711
Score = 57.0 bits (136), Expect = 9e-08
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 20 LINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K* 79
+ ++ W L+ + IL+ +V+ +IP Y M + +C D L K +F
Sbjct: 1256 IAKRVILWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPESVC--DDLTKMTRNFWWVA 1313
Query: 80 STNKGM-NMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
+ + WD +TKAK NGGLG R + N ALL W L+ N L +Q+L A
Sbjct: 1314 DNGRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLAPQAWRLIEFPNSLCAQVLKA 1371
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 56.6 bits (135), Expect = 1e-07
Identities = 39/136 (28%), Positives = 66/136 (47%), Gaps = 10/136 (7%)
Query: 2 KTNHFNIIFKLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHY 61
KTN F+ I + + K+ +W +LL+ + +L+ S++T+IP Y M L
Sbjct: 216 KTNAFSFIAQTMD-------QKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLP-- 266
Query: 62 ICVIDHLNKTVHSFI*K*STNKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVW 120
+ +I + + F + K + V W K+ KK GGL +R ++ NIALL K W
Sbjct: 267 MRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSW 326
Query: 121 NLLMPTNHLWSQILSA 136
+L L +++ A
Sbjct: 327 RILQQPFSLMARVFKA 342
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.337 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,833,826
Number of Sequences: 2790947
Number of extensions: 7228287
Number of successful extensions: 22218
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 21979
Number of HSP's gapped (non-prelim): 164
length of query: 136
length of database: 848,049,833
effective HSP length: 112
effective length of query: 24
effective length of database: 535,463,769
effective search space: 12851130456
effective search space used: 12851130456
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC149305.9