BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149206.10 - phase: 0
(427 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6L3U7 Putative RNase H domain containing protein [Sol... 90 1e-16
UniRef100_Q5XWN7 Hypothetical protein [Solanum tuberosum] 87 9e-16
UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa] 73 1e-11
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 73 1e-11
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 73 1e-11
UniRef100_Q8LMJ9 Putative reverse transcriptase, 5'-partial [Ory... 70 9e-11
UniRef100_Q6I5S8 Putative polyprotein [Oryza sativa] 69 2e-10
UniRef100_Q9ZUY7 Putative reverse transcriptase [Arabidopsis tha... 69 3e-10
UniRef100_O65407 Hypothetical protein F18E5.40 [Arabidopsis thal... 68 4e-10
UniRef100_Q7XJN3 Putative non-LTR retroelement reverse transcrip... 68 4e-10
UniRef100_Q7XKF8 OSJNBb0065J09.11 protein [Oryza sativa] 68 6e-10
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 67 7e-10
UniRef100_Q8LJX1 Putative reverse transcriptase [Sorghum bicolor] 67 1e-09
UniRef100_Q9LJP6 Non-LTR retroelement reverse transcriptase-like... 66 2e-09
UniRef100_Q942W6 P0506E04.5 protein [Oryza sativa] 65 3e-09
UniRef100_Q84Q64 Hypothetical protein OSJNBa0071M09.16 [Oryza sa... 65 4e-09
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 65 4e-09
UniRef100_Q60DM2 F-box domain containing protein [Oryza sativa] 65 5e-09
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip... 65 5e-09
UniRef100_Q65WR1 Putative polyprotein [Oryza sativa] 65 5e-09
>UniRef100_Q6L3U7 Putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 90.1 bits (222), Expect = 1e-16
Identities = 103/396 (26%), Positives = 164/396 (41%), Gaps = 31/396 (7%)
Query: 16 FSQMKVANYLVNGEWILSDFFAYKDNALVEKIHQI-ALPLDET--LDKLIWTDSVDGDLS 72
+++ V +++ EW DF D + ++QI ++P+ + D IW S +G +
Sbjct: 112 YNKDNVKDFIHKREW---DFDKLSDILPPQVVNQIVSIPIGDPNQSDYAIWIPSENGHFT 168
Query: 73 NKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICC 132
K A+ +W+ P +F+TWR + NKLP D + K I S C
Sbjct: 169 TKSAYVDCSNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYDTVGKFVDNIDSNCV 228
Query: 133 CFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSILNISR-----MVQHVMNSAI 187
C + ET +H+FL V LW SS +N+ + + +++ I
Sbjct: 229 CCKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKTWWNVQTHNSIHNVI 288
Query: 188 VH-----IMWSIW-LECNNKYFDGVQKPMSTLFNTI---LAEVLRLSFMLDIVKGASSMQ 238
+H I W IW C KY D + T+ N + L LR++F + +S +
Sbjct: 289 IHTLPILIFWEIWKRRCACKYGDQKKMWYRTMENHVWWNLKMSLRMTF--PSFEIGNSWR 346
Query: 239 DFKLARLFSIPFKTNRVNPCREII-WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQT 297
D L ++ S+ R P +I+ W P+ C+KIN DGS S +G I R
Sbjct: 347 DL-LNKVESL-----RPYPKWKIVHWNTPNINCVKINTDGSF--SSGNAGLGWIVRDHTR 398
Query: 298 MFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWK 357
AF+ ++ AE A F I + N ++E DS V+ K
Sbjct: 399 RMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLK 458
Query: 358 MHIRWHNCLLFCRSIRSLCTHVNREGNLVADALAKN 393
+ + + + H RE N VADALAK+
Sbjct: 459 IKGVVEDIIQVVAKMNCEVNHCYREANQVADALAKH 494
>UniRef100_Q5XWN7 Hypothetical protein [Solanum tuberosum]
Length = 1095
Score = 87.0 bits (214), Expect = 9e-16
Identities = 97/366 (26%), Positives = 148/366 (39%), Gaps = 25/366 (6%)
Query: 43 LVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTG 102
+V +I I + D IW S +G + K A+ +W+ P
Sbjct: 317 VVNQIVSIPIGDPNQSDYAIWIPSENGHFTTKSAYVDCSNTREKNDMRNKIWHGKFPFKM 376
Query: 103 AFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKA 162
+F+TWR + NKLP D + K I S C C + ET +H+FL V LW
Sbjct: 377 SFLTWRLVQNKLPFYDTVGKFVDNIDSNCVCCKNMKTETINHVFLNSDVASYLWKKFGGT 436
Query: 163 TDQHLDFSSILNISR-----MVQHVMNSAIVH-----IMWSIW-LECNNKYFDGVQKPMS 211
SS +N+ + + +++ I+H I W IW C KY D +
Sbjct: 437 LGIDTRASSTINLLKTWWNVQTHNSIHNVIIHTLPILIFWEIWKRRCACKYGDQKKMWYR 496
Query: 212 TLFNTI---LAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCREII-WVPPH 267
T+ N + L LR++F + +S +D L ++ S+ R P +I+ W P+
Sbjct: 497 TMENHVWWNLKMSLRMTF--PSFEIGNSWRDL-LNKVESL-----RPYPKWKIVHWNTPN 548
Query: 268 GGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKA 327
C+KIN DGS S +G I R AF+ ++ AE A F I
Sbjct: 549 INCVKINTDGSF--SSGNAGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWC 606
Query: 328 KELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCTHVNREGNLVA 387
+ N ++E DS V+ K+ + + + H RE N VA
Sbjct: 607 LQQGFHNCYLELDSKLVVDMVRNGQATNLKIKGVVEDIIQVVAKMNCEVNHCYREANQVA 666
Query: 388 DALAKN 393
DALAK+
Sbjct: 667 DALAKH 672
>UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]
Length = 791
Score = 73.2 bits (178), Expect = 1e-11
Identities = 79/352 (22%), Positives = 126/352 (35%), Gaps = 46/352 (13%)
Query: 27 NGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAF--------- 77
+G W + Y N E I I + D + W +G S + A+
Sbjct: 377 DGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNI 436
Query: 78 --SFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFC 135
S G +M+W P WR N L T N +KR S C C
Sbjct: 437 EESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQIC 495
Query: 136 RKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIV 188
++ E +H +C QLW + K+ +D + + + + + +
Sbjct: 496 DRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFL 555
Query: 189 HIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKL 242
+W W N+ G P + + + L F + D+VKG ++
Sbjct: 556 MTLWRNWY-VRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR---- 610
Query: 243 ARLFSIPFK-------TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRAS 295
++P K N PC W P G MK+N DGS S G +G+I R S
Sbjct: 611 ----TVPLKGGPKYRVLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNS 662
Query: 296 QTMFCGAFAQNIGYA-TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
+ + LE+E AC+ ++ A L I +ETD +V++
Sbjct: 663 AGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 714
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 73.2 bits (178), Expect = 1e-11
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 31 ILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPG--HGPTVH 88
+L D F +KD ++ K PL D W S +G S K + FL H
Sbjct: 954 MLRDLFPWKDVEIILKQR----PLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQ 1009
Query: 89 WAKM----------LWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQ 138
AK+ +WN +T P W+ LH +P +D LR RG C C +
Sbjct: 1010 EAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR-SDDGCLMCDTE 1068
Query: 139 AETSSHIFLQCPVTLQLWDWL-LKATDQHLDFSSILNISRMVQHVMNSAIVH-------- 189
ET +HI +CP+ Q+W L + S N+SR++ + + H
Sbjct: 1069 NETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPW 1128
Query: 190 IMWSIWLECNNKYFDGVQKPMSTL 213
I+W +W N F+G +TL
Sbjct: 1129 ILWFLWKNRNALLFEGKGSITTTL 1152
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 73.2 bits (178), Expect = 1e-11
Identities = 79/352 (22%), Positives = 126/352 (35%), Gaps = 46/352 (13%)
Query: 27 NGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAF--------- 77
+G W + Y N E I I + D + W +G S + A+
Sbjct: 1701 DGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNI 1760
Query: 78 --SFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFC 135
S G +M+W P WR N L T N +KR S C C
Sbjct: 1761 EESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQIC 1819
Query: 136 RKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIV 188
++ E +H +C QLW + K+ +D + + + + + +
Sbjct: 1820 DRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFL 1879
Query: 189 HIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKL 242
+W W N+ G P + + + L F + D+VKG ++
Sbjct: 1880 MTLWRNWY-VRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR---- 1934
Query: 243 ARLFSIPFK-------TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRAS 295
++P K N PC W P G MK+N DGS S G +G+I R S
Sbjct: 1935 ----TVPLKGGPKYRVLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNS 1986
Query: 296 QTMFCGAFAQNIGYA-TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
+ + LE+E AC+ ++ A L I +ETD +V++
Sbjct: 1987 AGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 2038
>UniRef100_Q8LMJ9 Putative reverse transcriptase, 5'-partial [Oryza sativa]
Length = 507
Score = 70.5 bits (171), Expect = 9e-11
Identities = 65/277 (23%), Positives = 105/277 (37%), Gaps = 35/277 (12%)
Query: 91 KMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCP 150
+M+W P WR N L T N +KR S C C ++ E +H +C
Sbjct: 168 EMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQICDRENEDDAHALCRCI 226
Query: 151 VTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIVHIMWSIWLECNNKYF 203
QLW + K+ +D + + + + + + +W W N+
Sbjct: 227 QASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWY-VRNELI 285
Query: 204 DGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKLARLFSIPFK------ 251
G P + + + L F + D+VKG ++ ++P K
Sbjct: 286 HGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR--------TVPLKGGPKYR 337
Query: 252 -TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYA 310
N PC W P G MK+N DGS S G +G+I R S + +
Sbjct: 338 VLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERC 393
Query: 311 -TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
LE+E AC+ ++ A L I +ETD +V++
Sbjct: 394 NNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 430
>UniRef100_Q6I5S8 Putative polyprotein [Oryza sativa]
Length = 1419
Score = 69.3 bits (168), Expect = 2e-10
Identities = 44/185 (23%), Positives = 79/185 (41%), Gaps = 32/185 (17%)
Query: 59 DKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDD 118
D ++W S G + K A+ +++W + P F W N++ T D
Sbjct: 253 DTILWRWSASGLYTAKSAYVMQFMGKTFSDSTELVWETWAPGKHKFFAWLLAQNRIWTAD 312
Query: 119 NLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLW---------------------- 156
+L+ RG + + C C + ET H+F++CP T Q+W
Sbjct: 313 HLQCRG-WPNNYFCQLCFRNLETVQHLFMECPFTQQVWRDIGRKFRPQRFLHVTTDNTLL 371
Query: 157 DWLLKATDQHLDFSSILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNT 216
+W + TD+ ++ Q + SA++ +W IW+E N++ F G + S L +
Sbjct: 372 NWWREQTDE---------AEKLQQKGLRSAVLTTLWEIWMERNDRIFRGKESTPSALASK 422
Query: 217 ILAEV 221
I+ E+
Sbjct: 423 IIDEL 427
>UniRef100_Q9ZUY7 Putative reverse transcriptase [Arabidopsis thaliana]
Length = 314
Score = 68.6 bits (166), Expect = 3e-10
Identities = 82/309 (26%), Positives = 118/309 (37%), Gaps = 36/309 (11%)
Query: 121 RKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKA-------TDQHLD--FSS 171
R+R S C C+ +T HI CP +W L+ A T L+ F++
Sbjct: 11 RRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLLEWLFAN 70
Query: 172 ILNISRMVQHVMNSAIVHIMWSIWL-ECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDI 230
+ + + + ++ +W W C N + GVQ + S I
Sbjct: 71 LGDRRKTCESTWSTLFALSIWWAWKWRCGNIF--GVQDKCRDRVRFLKDLARETSMAHVI 128
Query: 231 VKGASSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGV 290
V+ S ++ RL I W P G K+N DG+ G+P S G
Sbjct: 129 VRTLSGGHGERVERL---------------IAWSKPEEGWWKLNTDGASRGNPGLASAGG 173
Query: 291 IFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHF 350
+ R + + G FA NIG +A AE + + A E +T + IE DS V+
Sbjct: 174 VLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKI 233
Query: 351 NTGVPWKMHIRWHNCLLF-CRSIRSLCTHVNREGNLVADALAKNGQGLALYS-SHPLAFI 408
+ C F R R +HV RE N +AD GLA Y+ S PL F
Sbjct: 234 GINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLAD-------GLANYAFSLPLGFH 286
Query: 409 SSFYVRDCL 417
S V D L
Sbjct: 287 SLSLVPDSL 295
>UniRef100_O65407 Hypothetical protein F18E5.40 [Arabidopsis thaliana]
Length = 229
Score = 68.2 bits (165), Expect = 4e-10
Identities = 49/146 (33%), Positives = 75/146 (50%), Gaps = 21/146 (14%)
Query: 260 EIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSA 319
+++W P G +K+N DGS G SIG +FR + F ++++IG AT+ AE++A
Sbjct: 60 KVVWKKPENGRIKLNFDGSR-GREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAA 118
Query: 320 CMFAIEKAKELHLTNIWIETDSVNV---------IRAFHFNTGVPWKMHI--RWHNCLLF 368
+E A E LT++W+E D+ + +R N V + + +NC+L
Sbjct: 119 LKRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVL- 177
Query: 369 CRSIRSLCTHVNREGNLVADALAKNG 394
+HV REGN VAD LAK G
Sbjct: 178 --------SHVYREGNRVADKLAKLG 195
>UniRef100_Q7XJN3 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 296
Score = 68.2 bits (165), Expect = 4e-10
Identities = 42/160 (26%), Positives = 72/160 (44%), Gaps = 11/160 (6%)
Query: 63 WTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRK 122
W + S+ + L P WAK +W + P FITW +H++L T +R
Sbjct: 102 WKTGFKHNFSSNETWKMLRVEKPICRWAKEIWFSEATPKFFFITWLAIHDRLTTGARMRS 161
Query: 123 RGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLK---------ATDQHLDFSSIL 173
V C FC + ET +H+F QCP + Q+W+ L+K + D+ + +
Sbjct: 162 WNTQ-VDTTCKFCAEPVETRNHLFFQCPYSTQVWEKLMKGLLQGHYTSSWDRIVTLLTSS 220
Query: 174 NISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTL 213
++ R ++ + +IW E NN+ G + P++ L
Sbjct: 221 SLGRKHLLLLRYTFQIKVHTIWRERNNRR-HGEENPITPL 259
>UniRef100_Q7XKF8 OSJNBb0065J09.11 protein [Oryza sativa]
Length = 436
Score = 67.8 bits (164), Expect = 6e-10
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 43 LVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTG 102
L E + + L +E D+++W + +G + A+ P+ + ++W A+ P
Sbjct: 227 LWEAVRNVQLVSEEP-DQIVWKFTGNGHYTASSAYHAQCLEAPSTNLNSLIWKAWAPGKC 285
Query: 103 AFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKA 162
F W + N++ T D L RG + + C CR +AET H+ C T ++W +
Sbjct: 286 KFYVWLIIQNRVWTSDRLAIRG-WQNNGHCPLCRCEAETGLHLVATCRYTKRIWHHVAGW 344
Query: 163 TDQH-LD-------------FSSILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQK 208
H L+ + S+ N + + + S I+ ++W IW E N + FD +
Sbjct: 345 VGYHQLEPSQWEEAQSVCQWWESLANTPNIPKKGLRSLILLVVWEIWKERNRRIFDNKEM 404
Query: 209 PMSTLFNTILAEVLRLSFMLDIVKGASSMQDF 240
+ L I E + + GA ++DF
Sbjct: 405 AVGLLLAKIKEEA-----SVWALAGAKRLRDF 431
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 67.4 bits (163), Expect = 7e-10
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 59 DKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDD 118
DKL WT S DG + + + L T K +W P W F NK+ T D
Sbjct: 811 DKLWWTLSKDGKFTVRSFYRALKLQ-QTSFPNKKIWKFRVPLKIRIFIWFFTKNKILTKD 869
Query: 119 NLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATD-------QHLDFSS 171
NL KRG C FC K ET H+F CP+ +W+ + A + Q L S
Sbjct: 870 NLLKRGWRKGDNKCQFCDK-VETVQHLFFDCPLARLIWNIIACALNVKPVLSRQDLFGSW 928
Query: 172 ILNISRMVQHVMNSAIVHIMWSIWLECNNK 201
I ++ + ++++ I ++WSIW +C NK
Sbjct: 929 IQSMDKFTKNLVIVGIAAVLWSIW-KCRNK 957
>UniRef100_Q8LJX1 Putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 12/191 (6%)
Query: 54 LDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNK 113
L+ T ++ W + S A+S L GH K +W ++ P W + ++
Sbjct: 1805 LERTQEQDQWKYKWGNNFSATKAYSELMGHQQIHEVHKWIWKSFCQPKHKVFFWLLIKDR 1864
Query: 114 LPTDDNLRKRGCYIVSICCCFC-RKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSI 172
L T + L+++ + S C C + ET+SH+FL C Q W L + DF I
Sbjct: 1865 LSTCNILKRKNMQLQSYNCVLCLQNSEETTSHLFLHCAYARQCWQLLDMDIPPNSDFPEI 1924
Query: 173 LNISRMVQHVMNS-----AIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFM 227
+ +H N+ + + W+IW NN F G+Q + E+L L
Sbjct: 1925 TD---HFKHGFNNQFFMVTTILLCWAIWSTRNNLIFRGIQPTIEGTKEIFKRELLLLEHR 1981
Query: 228 LDIVKGASSMQ 238
VK ++S Q
Sbjct: 1982 ---VKASNSSQ 1989
>UniRef100_Q9LJP6 Non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 66.2 bits (160), Expect = 2e-09
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 20/215 (9%)
Query: 41 NALVEKIHQIALPLDETLDKLIWT---DSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAY 97
N + I + + D+ +W DS G S+ + + W + +W
Sbjct: 228 NQIENHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPS 287
Query: 98 TPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWD 157
+ P +F+TW HN+L T D L K C FC ++ ET H+F CP + Q+W
Sbjct: 288 STPKYSFVTWLAFHNRLATGDRLYKWNSE-ARATCVFCDEELETRDHLFFSCPYSSQIWI 346
Query: 158 WLLKATDQHLDFSS-------ILNISRMVQHVMN-----SAIVHIMWSIWLECNNKYFDG 205
L K + SS +L+ S+ HV A++H S+W E N +
Sbjct: 347 ALAKGLLNGRNVSSWSLITPHLLDSSQPYLHVFTLRYTFQALIH---SLWRERNGRRHGE 403
Query: 206 VQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDF 240
P S L ++ + +R F G +Q+F
Sbjct: 404 PAIPASKL-TKLIDKNIRNRFSTLQKMGNKRLQEF 437
>UniRef100_Q942W6 P0506E04.5 protein [Oryza sativa]
Length = 325
Score = 65.5 bits (158), Expect = 3e-09
Identities = 62/247 (25%), Positives = 95/247 (38%), Gaps = 25/247 (10%)
Query: 119 NLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWL-------LKATDQHLDFSS 171
N +KR S+C C + E +H +CP LW+ + K D
Sbjct: 3 NKKKRNLEQNSLCT-ICGTEEEDVAHALCRCPHAKYLWEAMGNTNAISCKPDSNWKDSDW 61
Query: 172 ILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFM---- 227
IL+IS V ++ ++W IW N P+ I++ + L +
Sbjct: 62 ILDISGRVSKEERMGLMMLLWRIWYVRNGITHGKAAIPVEVSQRFIISYMASLLEIRQHP 121
Query: 228 -LDIVKGASSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCG 286
+++KG +Q S+P W+ P G MK+N DGS S G
Sbjct: 122 NANLIKGKHVVQYGS-----SMPLPRQCKPSAESSSWIRPQEGWMKLNVDGSYYPSDGKG 176
Query: 287 SIGVIFRASQTMF----CGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSV 342
G + R S CG + A+ALEAE C I A + L I +ETD +
Sbjct: 177 GTGAVLRDSSGNLIFAACGVLHRP---ASALEAEMVDCREGISMALQWTLLPIIVETDCL 233
Query: 343 NVIRAFH 349
+++ H
Sbjct: 234 EMVQLIH 240
>UniRef100_Q84Q64 Hypothetical protein OSJNBa0071M09.16 [Oryza sativa]
Length = 1143
Score = 65.1 bits (157), Expect = 4e-09
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 21/211 (9%)
Query: 43 LVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTG 102
L E + + L +E D+++W + G + A+ P ++ ++W + P
Sbjct: 934 LWEAVRNVHLDSEEP-DQIVWKFTSSGHYTASSAYHAQCLGAPNTNFNSLIWKVWAPGKC 992
Query: 103 AFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLL-- 160
F W + N++ T D L RG + + C CR ET+ H+ C T ++W +
Sbjct: 993 KFHAWLIIQNRVWTSDRLATRG-WRNNGHCPLCRCDTETALHLVAMCRYTKRIWRLVATW 1051
Query: 161 ------------KATDQHLDFSSILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQK 208
+A H + S+ N + + + S I+ ++W IW E N + FD K
Sbjct: 1052 AGYQQFEPAQWEEARSVHQWWESLANTPGIPKKGLRSLILLVVWEIWKERNRRIFD--HK 1109
Query: 209 PMSTLFNTILAEVLRLSFMLDIVKGASSMQD 239
M+T +L ++ L + GA ++D
Sbjct: 1110 EMAT---GVLLAKIKEEASLWALAGAKRLRD 1137
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 65.1 bits (157), Expect = 4e-09
Identities = 68/276 (24%), Positives = 103/276 (36%), Gaps = 49/276 (17%)
Query: 30 WILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPT--- 86
W + + D + + I +I L D+LIW+ + GD + + + +L H P+
Sbjct: 593 WDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGY-WLSTHDPSNTI 651
Query: 87 ---------VHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRK 137
V +WN P WR L LPT D L RG I C CR+
Sbjct: 652 PTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRI-DPGCPRCRR 710
Query: 138 QAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSIL------NISRMVQHVMNSAIVH-- 189
+ E+ +H CP W + +D L SSIL NIS ++ + N+ I
Sbjct: 711 ENESINHALFTCPFATMAW----RLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQ 766
Query: 190 ------IMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLA 243
++W IW NN F+ LR S + +V+ + ++ A
Sbjct: 767 KLIPFWLLWRIWKARNNVVFNN----------------LRESPSITVVRAKAETNEWLNA 810
Query: 244 RLFSIPFK-TNRVNPCREIIWVPPHGGCMKINCDGS 278
P + R WV P +K N D S
Sbjct: 811 TQTQGPRRLPKRTTAAGNTTWVKPQMPYIKCNFDAS 846
>UniRef100_Q60DM2 F-box domain containing protein [Oryza sativa]
Length = 855
Score = 64.7 bits (156), Expect = 5e-09
Identities = 88/350 (25%), Positives = 132/350 (37%), Gaps = 59/350 (16%)
Query: 91 KMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSIC-CCFCRKQAETSSHIFLQC 149
K LW P I WR H L T L +R +I S C FC + +T H+FL C
Sbjct: 537 KGLWKINAPGKMKIILWRAAHECLATGFQLPRR--HIPSTDGCVFCNRD-DTVEHVFLFC 593
Query: 150 PVTLQLWDWLLKATDQHL---DFSSILN-----ISRMVQHVMNSAIVHIMWSIWLECNN- 200
P Q+W+ + + L FS++ + + R H N+ + W IW NN
Sbjct: 594 PFAAQIWEEIKRKCAVKLGRNGFSTMRHWIFDFLKRGSSHT-NTLLAVTFWHIWEARNNT 652
Query: 201 KYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCRE 260
K +G P + + + L V G + R
Sbjct: 653 KNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGENTQAIPR---------------- 696
Query: 261 IIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALE-AEYSA 319
W P G IN D ++ S +G + R + A ++ I E AE A
Sbjct: 697 --WQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALA 754
Query: 320 CMFAIEKAKELHLTNIWIETDSVNVIRAFHFN----TGVPWKMHIRWHNCLLFCRSIRSL 375
A+ AKE L +I + +D + VIR + +GV C++ I+ L
Sbjct: 755 IRRALGLAKEEGLQHIVMASDCLTVIRRIQTSGRDRSGV---------GCVI--EDIKKL 803
Query: 376 CT--------HVNREGNLVADALAKNGQGLALYSSHPLAFISSFYVRDCL 417
+ HVNR NL A +LA+N + L + + Y+RD L
Sbjct: 804 ASTFVLCSFMHVNRLSNLAAHSLARNAE---LSTCTVYRSVIPDYIRDIL 850
>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1382
Score = 64.7 bits (156), Expect = 5e-09
Identities = 87/349 (24%), Positives = 129/349 (36%), Gaps = 57/349 (16%)
Query: 91 KMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSIC-CCFCRKQAETSSHIFLQC 149
K LW P WR H L T LR+R +I S C FC + +T H+FL C
Sbjct: 1064 KGLWKINAPGKMKITLWRAAHECLATGFQLRRR--HIPSTDGCVFCNRD-DTVEHVFLFC 1120
Query: 150 PVTLQLWDWLLKATDQHL---DFSS----ILNISRMVQHVMNSAIVHIMWSIWLECNN-K 201
P Q+W+ + L FS+ I + + N+ + W IW NN K
Sbjct: 1121 PFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTK 1180
Query: 202 YFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCREI 261
+G P + + + L V G + R
Sbjct: 1181 NNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGNTQAIPR----------------- 1223
Query: 262 IWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALE-AEYSAC 320
W PP IN D ++ S +G + R + A ++ I E AE A
Sbjct: 1224 -WQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAI 1282
Query: 321 MFAIEKAKELHLTNIWIETDSVNVIRAFHFN----TGVPWKMHIRWHNCLLFCRSIRSLC 376
A+ AKE L +I + +D + VIR + +GV C++ I+ L
Sbjct: 1283 RRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSGV---------GCVI--EDIKKLA 1331
Query: 377 T--------HVNREGNLVADALAKNGQGLALYSSHPLAFISSFYVRDCL 417
+ HVNR NL A +LA+N + L + + Y+RD L
Sbjct: 1332 STFVLCSFMHVNRLSNLAAHSLARNAE---LSTCTVYRSVIPDYIRDIL 1377
>UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]
Length = 1023
Score = 64.7 bits (156), Expect = 5e-09
Identities = 46/193 (23%), Positives = 84/193 (42%), Gaps = 20/193 (10%)
Query: 43 LVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTG 102
L E + + L +E D+++W + G + A+ P ++ ++W + P
Sbjct: 814 LWEAVRNVHLDSEEP-DQIVWKFTSSGHYTASSAYHAQCLGAPNTNFNSLIWKVWAPGKC 872
Query: 103 AFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLL-- 160
F W + N++ T D L RG + + C CR ET+ H+ C T ++W +
Sbjct: 873 KFHAWLIIQNRVWTSDRLATRG-WRNNGHCPLCRCDTETALHLVAMCRYTKRIWRLVATW 931
Query: 161 ------------KATDQHLDFSSILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQK 208
+A H + S+ N + + + S I+ ++W IW E N + FD K
Sbjct: 932 AGYQQLEPAQWEEARSVHQWWESLANTPGIPKKGLRSLILLVVWEIWKERNRRIFD--HK 989
Query: 209 PMSTLFNTILAEV 221
M+T +LA++
Sbjct: 990 EMAT--GVLLAKI 1000
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.327 0.139 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 744,526,052
Number of Sequences: 2790947
Number of extensions: 30917964
Number of successful extensions: 79967
Number of sequences better than 10.0: 250
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 79606
Number of HSP's gapped (non-prelim): 294
length of query: 427
length of database: 848,049,833
effective HSP length: 130
effective length of query: 297
effective length of database: 485,226,723
effective search space: 144112336731
effective search space used: 144112336731
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC149206.10