BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149205.14 - phase: 0 /pseudo
(890 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 107 1e-21
UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana] 105 8e-21
UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana] 105 8e-21
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 104 1e-20
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 104 1e-20
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip... 103 2e-20
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 102 4e-20
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 102 4e-20
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 102 4e-20
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 102 5e-20
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip... 102 5e-20
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 102 5e-20
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 100 1e-19
UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sat... 100 1e-19
UniRef100_Q8VXT8 Reverse transcriptase [Brassica napus] 100 3e-19
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 100 3e-19
UniRef100_O22220 Putative non-LTR retroelement reverse transcrip... 99 7e-19
UniRef100_Q8LMV3 Putative reverse transcriptase [Oryza sativa] 97 3e-18
UniRef100_Q84MQ3 Putative reverse transcriptase [Oryza sativa] 96 5e-18
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 96 6e-18
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 107 bits (268), Expect = 1e-21
Identities = 45/106 (42%), Positives = 74/106 (69%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P ++I +N +VA E++H +K++ Q YVA+K DISKAYDR++W++L+++MI++GF+ +
Sbjct: 904 PGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPR 963
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++W++ SV Y VL+N G + RG+RQG PLS + C
Sbjct: 964 WVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFC 1009
>UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 105 bits (261), Expect = 8e-21
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N +VA E++H +K R +++A+K D+SKAYDR++W YL+ +++ +GF KW
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++V SV Y+VL+N G +IL RGLRQG PLS + LC L
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 614
>UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 105 bits (261), Expect = 8e-21
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N +VA E++H +K R +++A+K D+SKAYDR++W YL+ +++ +GF KW
Sbjct: 509 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 568
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++V SV Y+VL+N G +IL RGLRQG PLS + LC L
Sbjct: 569 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 617
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 104 bits (260), Expect = 1e-20
Identities = 48/110 (43%), Positives = 74/110 (66%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N +VA E+IH ++T R +++A K D+SKAYDR++W +L+ +M +GF+ K
Sbjct: 520 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 579
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
WI W++ SV Y+VL+N + G +I RG+RQG PLS + + LC +L
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEAL 629
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 104 bits (259), Expect = 1e-20
Identities = 43/109 (39%), Positives = 74/109 (67%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N ++A E++H ++T + +++ K D+SKAYDR++W +L+EI++ +GF+ KW
Sbjct: 495 ERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKW 554
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
I W++ SV Y+VL+N +H G + RG+RQG P+S + LC +L
Sbjct: 555 ISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEAL 603
>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 103 bits (258), Expect = 2e-20
Identities = 45/109 (41%), Positives = 72/109 (65%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N ++A E H ++T + KY+A+K D+SKAYDR++W +L+ +M+KMGF+QKW
Sbjct: 490 ERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKW 549
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++ SV Y +L+N G + RG+RQG P+S + LC +L
Sbjct: 550 VDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEAL 598
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 102 bits (255), Expect = 4e-20
Identities = 51/123 (41%), Positives = 75/123 (60%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A E++H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 163 PGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDK 222
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRAS 154
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC L + +S
Sbjct: 223 WIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASS 282
Query: 155 GHI 157
G I
Sbjct: 283 GDI 285
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 102 bits (255), Expect = 4e-20
Identities = 48/106 (45%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A EV+H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 924 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 983
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC
Sbjct: 984 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 1029
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 102 bits (255), Expect = 4e-20
Identities = 48/106 (45%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A EV+H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 698 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 757
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC
Sbjct: 758 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 803
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 102 bits (254), Expect = 5e-20
Identities = 47/106 (44%), Positives = 73/106 (68%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R + +N M+A E++H +KT+ R Y+A+K D+SKAYDR++W++L+ M GFS+
Sbjct: 904 PGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSET 963
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI+W++ + +SV+Y+VLVN G + RG+RQG PLS + LC
Sbjct: 964 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILC 1009
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 102 bits (254), Expect = 5e-20
Identities = 50/119 (42%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N ++ EV+HF++T + + +A+K D+SKAYDR++WD+LK+++ + GF
Sbjct: 437 PGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSI 496
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRA 153
WI W++ SV Y+ L+N G V+ RGLRQG PLS + LC L CTRA
Sbjct: 497 WIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGL--CTRA 553
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 102 bits (254), Expect = 5e-20
Identities = 47/106 (44%), Positives = 73/106 (68%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R + +N M+A E++H +KT+ R Y+A+K D+SKAYDR++W++L+ M GFS+
Sbjct: 924 PGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSET 983
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI+W++ + +SV+Y+VLVN G + RG+RQG PLS + LC
Sbjct: 984 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILC 1029
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 100 bits (250), Expect = 1e-19
Identities = 44/104 (42%), Positives = 73/104 (69%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E+ H ++T + +DK++A+K D+SKAYD+++W++++ ++ KMGF +KWI
Sbjct: 328 RLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWI 387
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++ +V Y VL+N + G +I RGLRQG PLS + LC
Sbjct: 388 SWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILC 431
>UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sativa]
Length = 1264
Score = 100 bits (250), Expect = 1e-19
Identities = 45/123 (36%), Positives = 76/123 (61%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I N ++A E+ H++ + +G++ A+KLD+SKAYDR++WD+L+ +M+++GF +
Sbjct: 890 PRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQ 949
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRAS 154
W+ ++ SV Y + +N EH + RGLRQG PLS + +C L + + +A
Sbjct: 950 WVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQAD 1009
Query: 155 GHI 157
G I
Sbjct: 1010 GKI 1012
>UniRef100_Q8VXT8 Reverse transcriptase [Brassica napus]
Length = 139
Score = 100 bits (248), Expect = 3e-19
Identities = 44/97 (45%), Positives = 67/97 (68%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E H ++T T + K+VA+K D+SKAYDR++WD+L+ +++KMGF++ W+
Sbjct: 43 RLITDNILLAQEAFHALRTNTMCKAKFVAIKTDMSKAYDRVEWDFLEALLLKMGFAETWV 102
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLS 133
W+ SV Y +L+N E G + RGLRQG PLS
Sbjct: 103 SWIRWCASSVSYQILLNGEPKGNIQPSRGLRQGDPLS 139
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 99.8 bits (247), Expect = 3e-19
Identities = 45/108 (41%), Positives = 73/108 (66%), Gaps = 4/108 (3%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKY--VALKLDISKAYDRMDWDYLKEIMIKMGFS 92
P R+I +N ++ E++HF++ G KY +A+K D+SKAYDR+ W++L+E+++++GF
Sbjct: 483 PGRAIADNVLITHEILHFLRVS--GAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFH 540
Query: 93 QKWIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
KWI+W++ +V Y+ L+N G V+ RGLRQG PLS + LC
Sbjct: 541 DKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILC 588
>UniRef100_O22220 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 98.6 bits (244), Expect = 7e-19
Identities = 43/109 (39%), Positives = 70/109 (63%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R + +N ++A E++H ++T + ++ K D+SKAYDR++W +LK I++ +GF+ W
Sbjct: 272 ERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTW 331
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
I WM+ SV Y+VL+N + G + RGLRQG PLS + LC +L
Sbjct: 332 INWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEAL 380
>UniRef100_Q8LMV3 Putative reverse transcriptase [Oryza sativa]
Length = 566
Score = 96.7 bits (239), Expect = 3e-18
Identities = 42/106 (39%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N ++A E HF++ K G+D Y A+KLD+SKAYDR++W +L ++ ++GF +K
Sbjct: 63 PGRLITDNVLIAYEATHFLQNKRNGKDGYAAIKLDMSKAYDRVEWPFLLHMLRRLGFDEK 122
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W + ++ +V+Y + VN ++ + RGLRQG PLS + +C
Sbjct: 123 WNRLIMNCVTTVNYKIKVNGDYTEVIKPDRGLRQGDPLSPYLFVIC 168
>UniRef100_Q84MQ3 Putative reverse transcriptase [Oryza sativa]
Length = 818
Score = 95.9 bits (237), Expect = 5e-18
Identities = 42/99 (42%), Positives = 65/99 (65%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +NA++A E H+++ R + ALKLD+SKA+DR+DWD+L +++++GF++K
Sbjct: 63 PGRMITDNALIAFECFHYIQKCNRESQMFCALKLDLSKAFDRVDWDFLDGVLLRLGFAEK 122
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLS 133
W +W++ V Y+V N + P RGLRQG PLS
Sbjct: 123 WRKWIMSCVTFVQYSVRFNGNLLEPFKPSRGLRQGDPLS 161
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 95.5 bits (236), Expect = 6e-18
Identities = 45/106 (42%), Positives = 65/106 (60%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N ++A E+ H+M+ K GQ Y A KLD+SKAYDR++W +L ++M+K+GF
Sbjct: 743 PGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTD 802
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W+ ++ +V Y + VN E RGLRQG PLS + LC
Sbjct: 803 WVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLC 848
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.368 0.164 0.641
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,176,275,851
Number of Sequences: 2790947
Number of extensions: 40273915
Number of successful extensions: 166077
Number of sequences better than 10.0: 351
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 165664
Number of HSP's gapped (non-prelim): 398
length of query: 890
length of database: 848,049,833
effective HSP length: 136
effective length of query: 754
effective length of database: 468,481,041
effective search space: 353234704914
effective search space used: 353234704914
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 80 (35.4 bits)
Medicago: description of AC149205.14