BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149197.1 + phase: 0 /pseudo
         (610 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]                  443  e-123
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]              441  e-122
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]                  435  e-120
UniRef100_Q7X670 OSJNBa0093P23.9 protein [Oryza sativa]               433  e-120
UniRef100_Q7XFG2 Putative retroelement [Oryza sativa]                 423  e-117
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]                  419  e-115
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa...   395  e-108
UniRef100_Q75IK3 Putative polyprotein [Oryza sativa]                  395  e-108
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]                  393  e-108
UniRef100_Q9AYJ5 Putative pol polyprotein [Oryza sativa]              370  e-101
UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidop...   350  9e-95
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...   314  6e-84
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza...   312  2e-83
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop...   308  2e-82
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]              307  5e-82
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]      304  4e-81
UniRef100_O81903 Putative transposable element [Arabidopsis thal...   304  6e-81
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops...   302  2e-80
UniRef100_Q9AUZ1 Polyprotein, putative [Arabidopsis thaliana]         301  3e-80
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                            298  3e-79

>UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]
          Length = 1241

 Score =  443 bits (1140), Expect = e-123
 Identities = 221/422 (52%), Positives = 293/422 (69%), Gaps = 23/422 (5%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           +LDT   +HMCP RD F T+E V  G VLMG+D  C+VA IG V  K  DG +RTL +  
Sbjct: 210 ILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVR 269

Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
                  SL+          KYS   G+L V+KG LV++KA  +  +LY L+G  + G+ 
Sbjct: 270 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNV 329

Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
           AAVS S+   D T LWHM LGHM+E G+  LSK+G L  Q I KL+FC+H +F K K+V 
Sbjct: 330 AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 389

Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
           F+T+TH T+GILDY+HSDLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F  F
Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVF 449

Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
           K+W+ +VE QT + VK L TDN +E CS  F  +C + GI RH T+P  PQQNGVAERM 
Sbjct: 450 KEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 509

Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
           RT++ +ARCMLSNA L   +  W EA STAC+L+NRSP  A+D K P ++WSG+  +YS+
Sbjct: 510 RTIISKARCMLSNASL--PKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD 567

Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
           LR+FGC AYA V++GKL PR ++CIFL Y S  KGY+LWC  P+++K+++SR+V F+E  
Sbjct: 568 LRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWC--PETKKVVISRNVVFHESI 625

Query: 603 LL 604
           +L
Sbjct: 626 ML 627


>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
          Length = 1181

 Score =  441 bits (1134), Expect = e-122
 Identities = 222/422 (52%), Positives = 295/422 (69%), Gaps = 24/422 (5%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           +LDT   +HMCP RD F T+E V  G VLMG+D  C+VA IG V  K  DG +RTL++  
Sbjct: 301 ILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVR 360

Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGSA 303
                  SL+          KYS   G+L V+KG LV++KAS +  +LY LQG  + G+ 
Sbjct: 361 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNV 420

Query: 304 A-VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
           A VS S+   D T LWHM LGHM+E G+  LSK+G L  Q I KL+FC+H +F K K+V 
Sbjct: 421 ATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVK 480

Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
           F+T+TH T+GILDY+HSDLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F  F
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVF 540

Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
           K+W+ +VE QT + VK L TDN +EFCS  F  +C + GI RH T+P  PQQNGVAERM 
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600

Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
           R ++ +ARCMLSNAGL   +  W EA STAC+L+NRSP S  + K P ++WSG+  +YS+
Sbjct: 601 RIIISKARCMLSNAGL--PKQFWAEAVSTACYLINRSP-SYANKKTPIEVWSGSPANYSD 657

Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
           L++FGC AYA V++GKL PRA++CIFL Y S  KGY+LWC  P+++K+++SR+V F+E  
Sbjct: 658 LKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWC--PETKKVVISRNVVFHESI 715

Query: 603 LL 604
           +L
Sbjct: 716 ML 717


>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
          Length = 1280

 Score =  435 bits (1119), Expect = e-120
 Identities = 218/422 (51%), Positives = 290/422 (68%), Gaps = 23/422 (5%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           +LDT + +HMCP RD F T+E +  G VLMG+D  C+VA IG V  K  DG +RTL++  
Sbjct: 336 ILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVR 395

Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
                  SL+          KYS   G+L V+KG LV++KA  +  +LY L+G  + G+ 
Sbjct: 396 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNV 455

Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
           AAVS S+   D T LWHM LGHM+E G+  LSK+  L  Q I KL+FC+H +F K K+V 
Sbjct: 456 AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVK 515

Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
           F+T+TH T+GILDY+HSDLWGP+  TS+GG RYMMTI+DD+ RKVW YFL++K + F  F
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVF 575

Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
           K+W+ +VE QT K VK L TDN +EFCS  F  +C + GI  H T+P  PQQNGVAERM 
Sbjct: 576 KEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMN 635

Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
             ++ +ARCMLSNA L   +  W EA ST C+L+NRSP  A D K P ++WSG+  +YS+
Sbjct: 636 MAIISKARCMLSNADL--PKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSD 693

Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
           LR+FGC AYA V++GKL PRA++CIFL Y S  KGY+LWC  P+++K+++SR+V F+E  
Sbjct: 694 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC--PETKKVVISRNVVFHESV 751

Query: 603 LL 604
           +L
Sbjct: 752 IL 753


>UniRef100_Q7X670 OSJNBa0093P23.9 protein [Oryza sativa]
          Length = 944

 Score =  433 bits (1113), Expect = e-120
 Identities = 220/422 (52%), Positives = 292/422 (69%), Gaps = 27/422 (6%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           +LDT   +HMCP RD F T+E V  G VLMG+D  C+VA IGIV  K  DG + TL++  
Sbjct: 133 ILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVR 192

Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
                  SL+          KYS   G+L V+KG LV++KA  +  +LY L+G  + G+ 
Sbjct: 193 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNV 252

Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
           AAVS S+   D T LWHM LGHM+E G+  LSK+G L  Q I KL+FC+H +F K K+V 
Sbjct: 253 AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 312

Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
           F+T+TH T+GILDY+HSDLWGP++ TS+GG RY+MTI+DD+ RKVW YFL++K + F  F
Sbjct: 313 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVF 372

Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
           K+W+ +VE QT + VK L TDN +EFCS  F  +C + GI RH T    PQQNGVAERM 
Sbjct: 373 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYT----PQQNGVAERMN 428

Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
           RT++ +ARCMLSNAGL   +  W  A ST C+L+NRSP  A+D K P  +WSG   +YS+
Sbjct: 429 RTIISKARCMLSNAGL--PKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSD 486

Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
           LR+FGC AYA V++GKL PRA++CIFL Y+S  KGY+LWC  P+++K+++SR+V F+E  
Sbjct: 487 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWC--PETKKVVISRNVVFHESV 544

Query: 603 LL 604
           +L
Sbjct: 545 ML 546


>UniRef100_Q7XFG2 Putative retroelement [Oryza sativa]
          Length = 1225

 Score =  423 bits (1087), Expect = e-117
 Identities = 210/405 (51%), Positives = 279/405 (68%), Gaps = 28/405 (6%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTNES 261
           +LDT   +HMC  RD F T+E V  G VLMG+D  C+VA                     
Sbjct: 301 ILDTACTYHMCSNRDWFATYEAVQGGTVLMGDDTPCEVAGY------------------- 341

Query: 262 LVCKYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS-AAVSSSMPKKDVTKLWH 319
              KYS   G+L V+KG LV++KA  +  +LY L+G  + G+ AAVS S+   D T LWH
Sbjct: 342 ---KYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWH 398

Query: 320 MHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHS 379
           M LGHM+E G+  LSK+G L  Q I KL+FC+H +F K K+V F+T+TH T+GILDY+HS
Sbjct: 399 MRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 458

Query: 380 DLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKK 439
           DLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F  FK+W+ +VE QT + VK 
Sbjct: 459 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 518

Query: 440 LITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL* 499
           L TDN ++FCS  F  +C + GI RH T+P  PQQNGVAERM RT++ +ARCMLSNAGL 
Sbjct: 519 LRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGL- 577

Query: 500 N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKL 559
             +  W EA STAC+L+NRSP  A+D K P  +WSG+  +YS+LR+FGC AYA V++ KL
Sbjct: 578 -PKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKL 636

Query: 560 APRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALL 604
            PRA++CIFL Y S  KGY+LWC  P+++K+++SR+V F+E  +L
Sbjct: 637 EPRAIKCIFLGYPSGVKGYKLWC--PETKKVVISRNVVFHESVML 679


>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
          Length = 1243

 Score =  419 bits (1076), Expect = e-115
 Identities = 210/400 (52%), Positives = 281/400 (69%), Gaps = 18/400 (4%)

Query: 215 RDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN--------ESLVCKY 266
           +D F T+E +  G VLMG+D  C+VA IG V  K  DG +RTL++         SL+  Y
Sbjct: 299 QDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLY 358

Query: 267 SAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS-AAVSSSMPKKDVTKLWHMHLGH 324
               G+L V+KG LV++K   +  +LY L+G  + G+ AAV  S+   D T LWHM LGH
Sbjct: 359 ----GILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSDATNLWHMRLGH 414

Query: 325 MTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHSDLWGP 384
           M+E G+  LSK+G L  Q I KL+FC+H +F K K+V F+T+TH T+GILDY+HSDLWGP
Sbjct: 415 MSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGP 474

Query: 385 SKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN 444
           +  TS+GG RYMMTI+DD+ RKVW YFL++K + F  FK+W+ +VE QT + VK L TDN
Sbjct: 475 AHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDN 534

Query: 445 *LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDL 504
            +EFCS  F  +C + GI  H T P  PQQN VAERM RT++ +ARCMLSNAGL   +  
Sbjct: 535 GMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGL--PKQF 592

Query: 505 WVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKLAPRAV 564
           W EA STAC+L+NRSP  A+D K P ++WSG+  +YS+LR+FGC AYA V++GKL PRA+
Sbjct: 593 WAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAI 652

Query: 565 ECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALL 604
           +CIFL YAS  KGY+LWC  P+++K+++SR+V F+E  +L
Sbjct: 653 KCIFLGYASGVKGYKLWC--PETKKVVISRNVVFHESVIL 690


>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1326

 Score =  395 bits (1016), Expect = e-108
 Identities = 211/426 (49%), Positives = 281/426 (65%), Gaps = 28/426 (6%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
           +LDT  +FH+C  RD F++++ V  G VV MG+D   ++  IG V  KT+DG+ RTL   
Sbjct: 293 ILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352

Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS 302
                         T ++   KYS+ GGV+ VSKG LV ++      +LYVL+G  + GS
Sbjct: 353 RHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 412

Query: 303 ---AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
              AAVS   P K  T LWHM LGHM+E GM  L K+  L      K++FC+H VF K K
Sbjct: 413 VTAAAVSKDEPIK--TNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHK 470

Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
           +V F+T+ HRTKGILDY+H+DLWGPS+    GG RYM+TIIDD+ RKVW YFL++K++TF
Sbjct: 471 RVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTF 530

Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
             FK+W++ +E QT K VK L TDN  EFCS  F+++C   GI RH TIP  PQQNGVAE
Sbjct: 531 AAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAE 590

Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
           RM RT++ +ARCMLSNA +   +  W EAA+TAC+L+NRSP   L+ K P ++WSG   D
Sbjct: 591 RMNRTIISKARCMLSNARM--NKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPAD 648

Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
           YS LR+FGC AYA V++GKL PRA++C+FL Y S  K Y+LW  +P++ K  + R V FN
Sbjct: 649 YSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKRYKLW--NPETNKTFMRRSVVFN 706

Query: 600 EDALLS 605
           +  + +
Sbjct: 707 KSVMFN 712


>UniRef100_Q75IK3 Putative polyprotein [Oryza sativa]
          Length = 1175

 Score =  395 bits (1014), Expect = e-108
 Identities = 208/426 (48%), Positives = 280/426 (64%), Gaps = 28/426 (6%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
           +LDT  +FH+C  RD F++++ V  G VV MG+D   ++  IG V  KT+DG+ RTL   
Sbjct: 188 ILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 247

Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTG- 301
                         T ++   KYS  GGV+ VSKG LV ++      +LYVL+G  + G 
Sbjct: 248 RHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGY 307

Query: 302 --SAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
             +A VS   P K  T +WHM LGHM+E GM  L K+  L       ++FC+H VF K K
Sbjct: 308 VTAAVVSKDEPSK--TNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHK 365

Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
           +V F+T+ HRTKGILDY+H+DLWGPS+  S GG RYM+TIIDD+ RKVW YFL++K++TF
Sbjct: 366 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTF 425

Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
             FK+W+++++ QT K VK L TDN   FCS  F+++C   GI  H TIP  PQQNGVAE
Sbjct: 426 AAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIPYTPQQNGVAE 485

Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
           RM RT++ +ARCMLSNA +   +  W EAA TAC+L+NRSP  +L+ K P ++WSG   +
Sbjct: 486 RMNRTIISKARCMLSNARM--NKRFWAEAAKTACYLINRSPSISLNKKTPIEVWSGMPAN 543

Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
           YS LR+FGC AYA VN+GKL PRA++C+FL Y S  KGY+LW  +P++ K  +SR V FN
Sbjct: 544 YSQLRVFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETNKTFMSRSVVFN 601

Query: 600 EDALLS 605
           E  + +
Sbjct: 602 ESVMFN 607


>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
          Length = 1322

 Score =  393 bits (1009), Expect = e-108
 Identities = 211/421 (50%), Positives = 279/421 (66%), Gaps = 28/421 (6%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDC-GVVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
           +LDT  +FH+C  RD F++++ V    VV MG+D   ++  IG V  KT+DG+ RTL   
Sbjct: 293 ILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352

Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS 302
                         T ++   KYS  GGV+ VSKG LV ++      +LYVL+G  + GS
Sbjct: 353 RHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 412

Query: 303 ---AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
              AAV+   P K  T LWHM LGHM+E GM  L K+  L       ++FC+H VF K K
Sbjct: 413 VTAAAVTKDEPSK--TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHK 470

Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
           +V F+T+ HRTKGILDY+H+DLWGPS+  S GG RYM+TIIDD+ RK W YFL++K++TF
Sbjct: 471 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTF 530

Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
             FK+ ++++E QT K VK L TDN  EFCS  F+++C   GI RH TIP  PQQNGVAE
Sbjct: 531 AAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAE 590

Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
           RM RT++ +ARCMLSNA +   +  W EAA+TAC+L+NRSP   L+ K P +IWSG   D
Sbjct: 591 RMNRTIISKARCMLSNARM--NKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPAD 648

Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
           YS LR+FGC AYA V++GKL PRA++C+FL Y S  KGY+LW  +P++ K  +SR+V FN
Sbjct: 649 YSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETNKTFMSRNVIFN 706

Query: 600 E 600
           E
Sbjct: 707 E 707


>UniRef100_Q9AYJ5 Putative pol polyprotein [Oryza sativa]
          Length = 1005

 Score =  370 bits (951), Expect = e-101
 Identities = 201/412 (48%), Positives = 265/412 (63%), Gaps = 28/412 (6%)

Query: 216 DLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL----------------- 257
           D F++++ V  G VV MG+D   ++  IG V  KT+DG+  TL                 
Sbjct: 44  DWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTCTLKDVRHILGMARNLISLS 103

Query: 258 TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS---AAVSSSMPKKD 313
           T ++   KYS  GGV+ VSKG LV ++      +LYVL+G  + GS   AAV+   P K 
Sbjct: 104 TLDAEGYKYSGSGGVVKVSKGSLVYIIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSK- 162

Query: 314 VTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGI 373
            T LWHM LGHM+E GM  L K+  L       ++FC+H VF K K V F+ + HR KGI
Sbjct: 163 -TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKWVKFNISVHRIKGI 221

Query: 374 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 433
           LDY+H+DLWGPS   S GG RYM+TIIDD  RKVW YFL++K++TF  FK+W++++E QT
Sbjct: 222 LDYVHADLWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQT 281

Query: 434 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 493
            K VK L TDN  EFCS  F+++    GI RH TIP  PQQNGVAERM RT++ +A CML
Sbjct: 282 EKEVKVLRTDNGGEFCSDAFDDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCML 341

Query: 494 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 553
           SNA +   +  W EAA+TAC+L+NRSP   L+ K P ++WSG   DYS LR+FGC AYA 
Sbjct: 342 SNARM--NKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAH 399

Query: 554 VNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALLS 605
           V++GKL PRA++C+FL Y S  KGY+LW  +P++ K  +SR V FNE  + +
Sbjct: 400 VDNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETNKTFMSRSVIFNESVMFN 449


>UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  350 bits (897), Expect = 9e-95
 Identities = 187/444 (42%), Positives = 267/444 (60%), Gaps = 24/444 (5%)

Query: 183 LILAMTLLYLLSPLIRGVKLLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*I 242
           ++LA     +++  I    +LDT  +FHM P +D F  F+ +  G V MGND    V  I
Sbjct: 267 VLLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGI 326

Query: 243 GIVHFKTNDGVVRTLTN-----------------ESLVCKYSAEGGVLMVSKGYLVLLKA 285
           G +  + +DG    LT+                 E   C + ++ G+L + KG   +LK 
Sbjct: 327 GSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKG 386

Query: 286 SRIDSLYVLQGIVVTGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGID 345
            + D+LY+L G+   G +   SS   KD T LWH  LGHM++KGM +L K+G L ++ I 
Sbjct: 387 QKRDTLYILDGVTEEGES--HSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIK 444

Query: 346 KLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHSDLWG-PSKVTSYGGRRYMMTIIDDFP 404
           +LEFC+  V+ KQ +VSF+ A H TK  L Y+HSDLWG P    S G  +Y ++ +DD+ 
Sbjct: 445 ELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYS 504

Query: 405 RKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIAR 464
           RKVW+YFLR K+E F  F +W+ +VE Q+ + VKKL TDN LE+C+  F +FC   GI R
Sbjct: 505 RKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVR 564

Query: 465 HKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSAL 524
           HKT    PQQNG+AER+ RT++++ R MLS +G+   +  W EAASTA +L+NRSP +A+
Sbjct: 565 HKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGM--EKKFWAEAASTAVYLINRSPSTAI 622

Query: 525 DFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSD 584
           +F +PE+ W+G L D S+LR FGC AY   + GKL PR+ + IF SY    KGY++W  +
Sbjct: 623 NFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLE 682

Query: 585 PKSQKLILSRDVTFNEDALLSSGK 608
            K  K ++SR+V F E  +    K
Sbjct: 683 DK--KCVISRNVIFREQVMFKDLK 704


>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  314 bits (804), Expect = 6e-84
 Identities = 176/420 (41%), Positives = 247/420 (57%), Gaps = 24/420 (5%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           +LDT  ++HM   R+ F  F     G V MGN    +V  +G +  K +DG+   LTN  
Sbjct: 310 ILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVR 369

Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQGIVVTGSAA 304
                          E    K+ +E G+L +  G  VLL   R D+LY+L    V   + 
Sbjct: 370 YIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVASESL 429

Query: 305 VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFS 364
             + + + D T LWH  L HM++K M +L ++G L K+ +  L+ C+  ++ K K+ SFS
Sbjct: 430 --AVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFS 487

Query: 365 TATHRTKGILDYIHSDLWG-PSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFK 423
            A H TK  L+YIHSDLWG P    S G  +Y M+IIDDF RKVWVYF++ K+E F  F 
Sbjct: 488 LAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFV 547

Query: 424 KWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIR 483
           +W  LVE QT + VK L TDN LEFC+  F+ FC + GI RH+T    PQQNGVAERM R
Sbjct: 548 EWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNR 607

Query: 484 TLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNL 543
           T++E+ R MLS++GL   +  W EA  T   L+N++P SAL+F++P+  WSGN   YS L
Sbjct: 608 TIMEKVRSMLSDSGL--PKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSYL 665

Query: 544 RIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
           R +GC A+   +DGKL PRA + + + Y    KGY++W  D   +K ++SR++ F E+A+
Sbjct: 666 RRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILD--ERKCVVSRNIIFQENAV 723


>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
          Length = 1229

 Score =  312 bits (799), Expect = 2e-83
 Identities = 182/421 (43%), Positives = 244/421 (57%), Gaps = 67/421 (15%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
           +LDT   F +C  RD F++ + V  G VV MG++   ++  IG V  KT+DG+ RTL   
Sbjct: 290 ILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDV 349

Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS 302
                         T ++   KYS  GGV+ VSKG LV ++      +LYVL+G  + GS
Sbjct: 350 RHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 409

Query: 303 ---AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
              AAVS   P K  T LWHM LGHM+E GM  L K+  L       ++FC+H VF K K
Sbjct: 410 LTAAAVSKDEPSK--TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHK 467

Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
           +V F+T+ HRTKGILDY+H+DLWGPS+  S GG  YM+TIIDD+ RKVW YFL++K++TF
Sbjct: 468 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTF 527

Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
             FK+W++++E Q  K VK L TDN  EFCS  F+++C   GI RH TIP  PQQN VAE
Sbjct: 528 AAFKEWKVMIERQAEKEVKVLRTDNGGEFCSDAFDDYCRKEGIGRHHTIPYTPQQNSVAE 587

Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
           RM RT++ +ARCMLSNA +   +  W EAA+T C+L+NRSP   L+ + P ++WSG    
Sbjct: 588 RMNRTIISKARCMLSNARM--NKHYWAEAANTTCYLINRSPSILLNKETPIEVWSG---- 641

Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
                                               KGY+LW  +P++ K  + R V FN
Sbjct: 642 -----------------------------------VKGYKLW--NPETNKTFMRRSVVFN 664

Query: 600 E 600
           +
Sbjct: 665 K 665


>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  308 bits (790), Expect = 2e-82
 Identities = 180/427 (42%), Positives = 245/427 (57%), Gaps = 24/427 (5%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           ++DT  ++HM   R+ F        G V MGN    KV  IG +  K   G+V  LTN  
Sbjct: 288 VMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNVR 347

Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQGIVVTGSAA 304
                          E     +  E G L +  G  VLL   R  +LY+LQ   VT  + 
Sbjct: 348 YIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEESL 407

Query: 305 VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFS 364
             S + ++D T LWH  LGHM++K M LL K+G L K+ + KLE C+  ++ K K++ F+
Sbjct: 408 --SVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIGFN 465

Query: 365 TATHRTKGILDYIHSDLWG-PSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFK 423
            A H T+  L+Y+HSDLWG PS   S G  +Y ++ IDD+ RKV +YFL+ K+E F  F 
Sbjct: 466 LAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFV 525

Query: 424 KWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIR 483
           +W  LVE QT K +K L TDN LEFC+  F+EFC+  GI  H+T    PQQNGVAERM R
Sbjct: 526 EWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNR 585

Query: 484 TLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNL 543
           TL+E+ R MLS++GL   +  W EA  T   L+N++P SAL+++VP+  WSG    YS L
Sbjct: 586 TLMEKVRSMLSDSGL--PKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYL 643

Query: 544 RIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
           R FGC A+   +DGKL PRA + I + Y    KGY++W  + K  K ++SR+V F E+A 
Sbjct: 644 RRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEK--KCVVSRNVIFQENAS 701

Query: 604 LSSGKQS 610
                QS
Sbjct: 702 YKDMMQS 708


>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
          Length = 1356

 Score =  307 bits (787), Expect = 5e-82
 Identities = 169/426 (39%), Positives = 247/426 (57%), Gaps = 24/426 (5%)

Query: 196 LIRGVKLLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVR 255
           +++ + +LD+    HM   RD F +F+      +L+G+D   +    G +   T+ G ++
Sbjct: 303 MVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIK 362

Query: 256 TLTNESLV---------------CKYSAEGGVLMVS--KGYLVLLKASRIDSLYVLQGIV 298
            L N   V                 Y  EGG   V   K     L+ S  + LYVL G  
Sbjct: 363 ILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGST 422

Query: 299 VTGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQ 358
           V     + ++   K  T LWH  LGHM+   + +L+ +G + ++ I++LEFC+H V  K 
Sbjct: 423 VMSE--LCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKS 480

Query: 359 KKVSFSTATHRTKGILDYIHSDLWGPSKVT-SYGGRRYMMTIIDDFPRKVWVYFLRYKNE 417
           KKVSF+   H ++  L Y+H+DLWG   VT S  G++Y ++IIDD  RKVW+YFL+ K+E
Sbjct: 481 KKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDE 540

Query: 418 TFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGV 477
           TF  F +W+ LVE Q  K VK L TDN LEFC+S F+ +C  HGI RH+T    PQQNGV
Sbjct: 541 TFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGV 600

Query: 478 AERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNL 537
           AERM RT++E+ RC+L+ +G+      W EAA+TA +L+NRSP SA++  VPE++W    
Sbjct: 601 AERMNRTIMEKVRCLLNKSGV--EEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRK 658

Query: 538 VDYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVT 597
             Y +LR FG  AY   + GKL PRA++  FL Y + +KGY++W  +   +K ++SR+V 
Sbjct: 659 PGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLE--EEKCVISRNVV 716

Query: 598 FNEDAL 603
           F E  +
Sbjct: 717 FQESVV 722


>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
          Length = 1230

 Score =  304 bits (779), Expect = 4e-81
 Identities = 168/406 (41%), Positives = 242/406 (59%), Gaps = 15/406 (3%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTNES 261
           ++DT  N+HM   ++ F        G V MGN    K     I     N   + TL    
Sbjct: 313 VMDTGCNYHMTHKKEWFEELSEDAGGTVRMGNKSTSKFRVKYIPDMDRNLLSMGTLEEHG 372

Query: 262 LVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQGIVVTGSAAVSSSMP---KKDVTKLW 318
               + ++ GVL+V +G   LL  SR + LY+LQG        VS SM    + D T LW
Sbjct: 373 Y--SFESKNGVLVVKEGTRTLLIGSRHEKLYLLQG-----KPEVSHSMTVERRNDDTVLW 425

Query: 319 HMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGILDYIH 378
           H  LGH+++K M +L K+G L  + + KLE C+  ++ K +++SF  ATH T+  L+Y+H
Sbjct: 426 HRRLGHISQKNMDILVKKGYLDGKKVSKLELCEDCIYGKARRLSFVVATHNTEDKLNYVH 485

Query: 379 SDLWG-PSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNV 437
           SDLWG PS   S G  +Y ++ ID + RK WVYFL++K+E F TF +W ++VE QTG+ +
Sbjct: 486 SDLWGAPSVPLSLGKCQYFISFIDVYSRKTWVYFLKHKDEAFGTFAEWSVMVENQTGRKI 545

Query: 438 KKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAG 497
           K L  DN LEFC+  FN+FC   GI RH+T    PQQNGVAERM  T++E+ R MLS +G
Sbjct: 546 KILRIDNGLEFCNQQFNDFCKEKGIVRHQTCAYTPQQNGVAERMNHTIMEKVRRMLSYSG 605

Query: 498 L*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDG 557
           L   +  W EA +T   L+N++P SA++F++ +  WSG    Y+ L+ FGC A+   ++G
Sbjct: 606 L--PKTFWAEATNTVVTLINKTPSSAVNFEISDKRWSGKSPVYNYLKRFGCVAFTYADEG 663

Query: 558 KLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
           KL PRA + +FL Y S  KGY++W  +   +K  +SR+VTF E+A+
Sbjct: 664 KLVPRAKKGVFLGYLSGEKGYKVWLLE--ERKCSVSRNVTFQENAV 707


>UniRef100_O81903 Putative transposable element [Arabidopsis thaliana]
          Length = 1308

 Score =  304 bits (778), Expect = 6e-81
 Identities = 171/427 (40%), Positives = 247/427 (57%), Gaps = 34/427 (7%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           ++D+   +HM    D F+ F   +  ++L+G+D   +    G V   T+ G +R L N  
Sbjct: 310 VIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTVKVNTHGGSIRVLKNVR 369

Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQG-IVVTGSA 303
                          + L  K+    G +   K     L  + ++ LYVL G  VV  + 
Sbjct: 370 FVPNLRRNLISTGTLDKLGYKHEGGDGKVRFYKENKTALCGNLVNGLYVLDGHTVVNENC 429

Query: 304 AVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSF 363
            V  S  K   T+LWH  LGHM+   M +L+++G L K+ I +L FC++ V  K KK+SF
Sbjct: 430 NVEGSNEK---TELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCVMGKSKKLSF 486

Query: 364 STATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFK 423
           +   H T  +L YIH+DLWG         ++Y ++IIDD  RKVW+ FL+ K+ETF  F 
Sbjct: 487 NVGKHITDEVLGYIHADLWG---------KQYFLSIIDDKSRKVWLMFLKTKDETFERFC 537

Query: 424 KWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIR 483
           +W+ LVE Q  K VK L TDN LEFC+  F+EFC  +GI RH+T    PQQNGVA+RM R
Sbjct: 538 EWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNR 597

Query: 484 TLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNL 543
           TL+E+ RC+L+ +GL      W EAA+TA +LVNRSP SA+D  VPE++W      Y +L
Sbjct: 598 TLMEKVRCLLNESGL--EEVFWAEAAATAAYLVNRSPASAVDHNVPEELWLDKKPGYKHL 655

Query: 544 RIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
           R FGC AY  ++ GKL PRA++ +FL Y   +KGY++W  D   +K ++SR++ FNE+ +
Sbjct: 656 RRFGCIAYVHLDQGKLKPRALKGVFLGYPQGTKGYKVWLLD--EEKCVISRNIVFNENQV 713

Query: 604 LSSGKQS 610
               ++S
Sbjct: 714 YKDIRES 720


>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  302 bits (773), Expect = 2e-80
 Identities = 168/420 (40%), Positives = 234/420 (55%), Gaps = 40/420 (9%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           +LDT  +FHM   +D    F+    G V MGND   +V  IG V  K  DG    LT+  
Sbjct: 313 ILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTDVR 372

Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQGIVVTGSAA 304
                          E   C + ++ G+L + K  L +L   +  +LY LQG  + G A 
Sbjct: 373 YIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFLQGTTLAGEAN 432

Query: 305 VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFS 364
           V     +KD T LWH  LGH+  KG+ +L  +G L K  +                +SF 
Sbjct: 433 VIDK--EKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNIM----------------ISFG 474

Query: 365 TATHRTKGILDYIHSDLWGPSKVT-SYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFK 423
            A H TK  LDY+HSDLWG + V  S G  +Y +T IDDF R+ W+YF+R K+E F  F 
Sbjct: 475 AAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFV 534

Query: 424 KWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIR 483
           +W+  +E Q  K +K LITDN LEFC+ +F+ FC   G+ RH+T    PQQNGVAERM R
Sbjct: 535 EWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNR 594

Query: 484 TLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNL 543
           T++ + RCMLS +GL   +  W EAASTA  L+N+SP S+++F +PE+ W+G+  DY  L
Sbjct: 595 TIMNKVRCMLSESGL--GKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKIL 652

Query: 544 RIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
           + FG  AY   + GKL PRA + IFL Y    K +++W  +   +K ++SRD+ F E+ +
Sbjct: 653 KKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLE--DRKCVVSRDIVFQENQM 710


>UniRef100_Q9AUZ1 Polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  301 bits (772), Expect = 3e-80
 Identities = 168/411 (40%), Positives = 233/411 (55%), Gaps = 24/411 (5%)

Query: 211 MCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTNESLVCK----- 265
           M   RD F +F+  D   +L+G+D   +    G +   T+ G +  L N   V       
Sbjct: 1   MTSRRDWFCSFQEKDTTKILLGDDHSVESQGQGSIRLDTHGGTITILENVKYVPNLRRNL 60

Query: 266 ----------YSAEGGVLMVS--KGYLVLLKASRIDSLYVLQGIVVTGSAAVSSSMPKKD 313
                     Y  EGG   V   K     L+ S    LYVL G  V   + ++     K+
Sbjct: 61  ISTGTLDRLGYKHEGGDGQVRYYKNNKTALRGSLSGGLYVLDGNTVIAESCIAER--SKE 118

Query: 314 VTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGI 373
           +T LWH  LGHM    M +L+ +G +       LEF +H V  K KKVSF+   H ++ I
Sbjct: 119 LTTLWHSRLGHMGGNNMKILAGKGLIKPSEATSLEFYEHCVMGKAKKVSFNIGKHNSEEI 178

Query: 374 LDYIHSDLWGPSKVT-SYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQ 432
           L Y+H+DLWG   VT S  G +Y ++IIDD  RKVW+YFLR K+ETF  F +W+ LVE Q
Sbjct: 179 LSYVHADLWGSQNVTPSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQ 238

Query: 433 TGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCM 492
           T K VK L TDN LEFC+  F+ +C  +GI RHKT    PQQNGVAERM RT++E+ RC+
Sbjct: 239 TDKRVKCLRTDNGLEFCNIKFDSYCKKYGIERHKTCTYTPQQNGVAERMNRTVMEKVRCL 298

Query: 493 LSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYA 552
           L+ +GL    + W E A+TA +++NRSP +A+D  VPE++W      Y +LR     AY 
Sbjct: 299 LNESGL--EEEFWAEVATTAVYIINRSPSAAIDHNVPEELWLNRKPGYKHLRRLRAVAYV 356

Query: 553 LVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
            V+ GKL PRA++ IF+ Y S +KGY++W  +   QK ++SR+V F E+ +
Sbjct: 357 HVDQGKLKPRAIKGIFIGYPSGTKGYKVWLLE--EQKCVISRNVIFQEEVV 405


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  298 bits (763), Expect = 3e-79
 Identities = 168/424 (39%), Positives = 251/424 (58%), Gaps = 29/424 (6%)

Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
           L+D+   +HM   ++ F  +EP+  G V   +D   ++  IG +  K  DG V+T+ +  
Sbjct: 283 LIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVR 342

Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDS-LYVLQGIVVT-GS 302
                          ++   +   + GV+ + +G LV++K  +I + LY+L+G  +    
Sbjct: 343 HVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAE 402

Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
           A+V++  P  D T LWH  LGHM+++GM +L +Q  +       L  C+H +  KQ ++ 
Sbjct: 403 ASVAACSP--DSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLK 460

Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
           FST+  R K +L+ +HSD+W  + V S GG +Y ++ IDD+ R+ WVY ++ K++ F TF
Sbjct: 461 FSTSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATF 519

Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
           K ++  VE  +GK +K   TDN  E+ S +F++FC   GI R  T+   PQQNGVAERM 
Sbjct: 520 KAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMN 579

Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
           RTLLER R ML  AGL   +  W EA +TAC+LVNR+P +A++ K P ++W+G  VDYSN
Sbjct: 580 RTLLERTRAMLRAAGL--EKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSN 637

Query: 543 LRIFGCPAYALVND---GKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
           L IFG   YA+ N     KL P++ +C FL YA   KGYRLW  DP + K+++SRDV F 
Sbjct: 638 LHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLW--DPTAHKVVISRDVIFV 695

Query: 600 EDAL 603
           ED L
Sbjct: 696 EDRL 699


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.331    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 953,721,491
Number of Sequences: 2790947
Number of extensions: 38477714
Number of successful extensions: 98633
Number of sequences better than 10.0: 1375
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 95788
Number of HSP's gapped (non-prelim): 1560
length of query: 610
length of database: 848,049,833
effective HSP length: 133
effective length of query: 477
effective length of database: 476,853,882
effective search space: 227459301714
effective search space used: 227459301714
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 78 (34.7 bits)