BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148652.2 - phase: 0 /pseudo
         (1145 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]                 1767  0.0
UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]                 1079  0.0
UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic ...   906  0.0
UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]                      744  0.0
UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sa...   744  0.0
UniRef100_Q8RZN9 Putative polyprotein [Oryza sativa]                  682  0.0
UniRef100_Q8LMM6 Putative gag-pol [Oryza sativa]                      681  0.0
UniRef100_Q7X6L5 OSJNBb0093G06.3 protein [Oryza sativa]               680  0.0
UniRef100_Q7XXB9 OSJNBa0027O01.4 protein [Oryza sativa]               678  0.0
UniRef100_Q7X8E7 OSJNBa0042F21.5 protein [Oryza sativa]               677  0.0
UniRef100_Q7XPQ7 OSJNBa0053K19.16 protein [Oryza sativa]              676  0.0
UniRef100_Q8GSW6 Putative gag-pol polyprotein [Oryza sativa]          675  0.0
UniRef100_Q75KG5 Putative polyprotein [Oryza sativa]                  675  0.0
UniRef100_Q8W3B5 Putative gag-pol [Oryza sativa]                      674  0.0
UniRef100_Q8S7A3 Putative retroelement [Oryza sativa]                 673  0.0
UniRef100_Q75IS9 Putative polyprotein [Oryza sativa]                  673  0.0
UniRef100_Q8LMM4 Putative gag-pol [Oryza sativa]                      671  0.0
UniRef100_Q7XWE4 OSJNBa0035O13.3 protein [Oryza sativa]               665  0.0
UniRef100_Q93Y89 Gag-pol [Oryza sativa]                               664  0.0
UniRef100_Q9SSW6 GAG-POL [Oryza sativa]                               662  0.0

>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
          Length = 2262

 Score = 1767 bits (4577), Expect = 0.0
 Identities = 824/1148 (71%), Positives = 994/1148 (85%), Gaps = 10/1148 (0%)

Query: 1    NFEFPVYEVEDEEGDD--IPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAA 58
            +F+ P+Y+ E+E  +D  +P E+ RLL+QE + I+PHQEE+E++NLGTE+  REIK+GAA
Sbjct: 1121 DFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAA 1180

Query: 59   LEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMA 118
            LE+ VKR++ ++LREY +IFAWSY+DMPGLD  IV HR+P +   P V+QKLRRT PDMA
Sbjct: 1181 LEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMA 1240

Query: 119  LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPH 178
             KIK EVQKQ DAGFL    YP W+ANIVPVPKKDGKVRMCVD+RDL +ASPKD+FPLPH
Sbjct: 1241 TKIKEEVQKQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPH 1300

Query: 179  IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGAT 238
            IDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITP GTFCYKVMPFGL NAGAT
Sbjct: 1301 IDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGAT 1360

Query: 239  Y*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 298
            Y R MTTLFHDM+HKE+EVYVDDMI KS+ EE+H+  L K+F+RLRK+KLRLNPNKCTFG
Sbjct: 1361 YQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFG 1420

Query: 299  VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 358
            VRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC 
Sbjct: 1421 VRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCE 1480

Query: 359  PIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG 418
            PIFKLLRKNQ I WND+CQ AFD IK YL +PPIL+PPV GRPLIMYLSV + S+GCVLG
Sbjct: 1481 PIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLG 1540

Query: 419  QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQ 478
            + DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCAL WAA+RLR Y++NHTT LIS+MD 
Sbjct: 1541 RHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDP 1600

Query: 479  IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPD 538
            +KYIFEKPA+T ++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPD
Sbjct: 1601 VKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPD 1660

Query: 539  EDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARIL 598
            EDIMYLK KDC+EPL+ EGPDPD KW L+FDG VN  G G+GAV+++P+G H+PF+AR+ 
Sbjct: 1661 EDIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLT 1720

Query: 599  FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYAR 658
            F+ TNN AEYEACI GIEEAID+RIK L+I+GDSALV+NQ+ G+W T+   LIPYRDY R
Sbjct: 1721 FDVTNNEAEYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTR 1780

Query: 659  RLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDM 718
            R+LT+F KV+L+H+PRDENQMADAL T+SSM +VN WN VP + V RLERP++VF  E +
Sbjct: 1781 RILTFFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV 1840

Query: 719  INRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLD-GDILYKRNYD 777
                   V+D++PWYYD K FL ++EYP GAS  DKKTLRRLAG F L+  D+LYKRN+D
Sbjct: 1841 -------VIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFD 1893

Query: 778  MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHK 837
            MVLLRC+D  EA+ LM +VH+G+FGTHA GH M++KLLRAGYYWMTME DC+++ARKCHK
Sbjct: 1894 MVLLRCMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHK 1953

Query: 838  CQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAA 897
            CQIYAD++HVPP  LNV++SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDY+TKWVEAA
Sbjct: 1954 CQIYADRVHVPPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAA 2013

Query: 898  SYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRP 957
            SYAN+TKQVV +FI+  IICRYGVP +IITDNG+NLNN +++ LC++FKIEHH SSPYRP
Sbjct: 2014 SYANITKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRP 2073

Query: 958  QMNGAVEAANKNIQKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1017
            +MNGAVEAANKNI+KIV+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAV
Sbjct: 2074 KMNGAVEAANKNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAV 2133

Query: 1018 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1077
            LP+EVEIPSLRV+++ KL EAEW ++R+++L+L+EE+R+  +  GQ YQ RMK AFD+KV
Sbjct: 2134 LPVEVEIPSLRVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKV 2193

Query: 1078 RPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 1137
            RPR ++ G+LVLKR +    D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN
Sbjct: 2194 RPRSYQIGDLVLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVN 2253

Query: 1138 ADIVKKYF 1145
            +D+VKKYF
Sbjct: 2254 SDVVKKYF 2261


>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
          Length = 1814

 Score = 1079 bits (2790), Expect = 0.0
 Identities = 509/691 (73%), Positives = 599/691 (86%), Gaps = 2/691 (0%)

Query: 1    NFEFPVYEVEDEEGDD--IPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAA 58
            +F  P+Y+ E+E  +D  +P E+ RLL QE + I+PHQEE+E++NLGTE+ KREIK+GAA
Sbjct: 1123 DFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTEDAKREIKIGAA 1182

Query: 59   LEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMA 118
            LE+ VKR++ ++LREY +IFAWSY+DMPGLD  IV HR+P +   P V+QKLRRT PDMA
Sbjct: 1183 LEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMA 1242

Query: 119  LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPH 178
             KIK EVQKQ DAGFL    YP WVANIVPVPKKDGKVRMCVD+RDL +ASPKD+FPLPH
Sbjct: 1243 TKIKEEVQKQWDAGFLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPH 1302

Query: 179  IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGAT 238
            IDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITP GTF YKVMPFGL NAGAT
Sbjct: 1303 IDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFYYKVMPFGLKNAGAT 1362

Query: 239  Y*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 298
            Y R MTTLFHDM+HKE+EVYVDDMI KS+ EE+H+  L K+F+RLRK+KLRLNPNKCTFG
Sbjct: 1363 YQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFG 1422

Query: 299  VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 358
            VRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC 
Sbjct: 1423 VRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCE 1482

Query: 359  PIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG 418
            PIFKLLRKNQ I WND+CQ AFD IK YL +PPIL PPV GRPLIMYLSV + S+GCVLG
Sbjct: 1483 PIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILTPPVPGRPLIMYLSVTENSMGCVLG 1542

Query: 419  QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQ 478
            Q DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCAL WAA+RLR Y++NHTT LIS+MD 
Sbjct: 1543 QHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDP 1602

Query: 479  IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPD 538
            +KYIFEKPA+T ++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPD
Sbjct: 1603 VKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPD 1662

Query: 539  EDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARIL 598
            EDIMYLK KDCEEPL+ EGPDPD KW L+FDG VN  G G+GAV+++P+G HIPF+AR+ 
Sbjct: 1663 EDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHIPFSARLT 1722

Query: 599  FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYAR 658
            F+ TNN AEYEACI GIEEAID+RIK L+IYGDSALV+NQ+ G+W T+   LIPYRDY R
Sbjct: 1723 FDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTR 1782

Query: 659  RLLTYFTKVELHHIPRDENQMADALGTISSM 689
            R+LT+F KV L+H+PRDENQMADAL T+SSM
Sbjct: 1783 RILTFFKKVRLYHVPRDENQMADALATLSSM 1813


>UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0433F09 [Oryza sativa]
          Length = 2876

 Score =  906 bits (2341), Expect = 0.0
 Identities = 483/1158 (41%), Positives = 693/1158 (59%), Gaps = 43/1158 (3%)

Query: 2    FEFPVYEVEDEEGDDIPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAALEE 61
            FE     VE+E       ++   L+Q     +P  +E+  +NLGTE++ R I V   L E
Sbjct: 1747 FEVAAVGVEEE------LDVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTE 1800

Query: 62   GVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKI 121
              +      L E+ D FAW+Y++MPGLD ++  H++   P++ PV+Q  RR  P+   ++
Sbjct: 1801 EEREDYRSFLMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQV 1860

Query: 122  KSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDV 181
             +EV + I+ GF+  ++YP W+ANIVPV KK+G+VR+CVDFRDL +A PKD+FPLP  ++
Sbjct: 1861 IAEVDRLINVGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEM 1920

Query: 182  LVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*R 241
            +VD+T            SGYNQIKM   D   T+F TP G F Y VMPFGL NAGATY R
Sbjct: 1921 VVDSTTG------YGALSGYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQR 1974

Query: 242  GMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRS 301
             M  +  D+IH  VE YVDDM+VK+KD E H E L  +FERLR+++L++NP KC F V+S
Sbjct: 1975 AMQFVLDDLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQS 2034

Query: 302  GKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIF 361
            G  LGF++  +GIE++P K++AI  MP PQ  K +R   G+L YI RFIS+++    P  
Sbjct: 2035 GVFLGFVIRHRGIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFS 2094

Query: 362  KLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQD 421
            KL++K  P VW++ECQ  FDSIK YLL PP+L  PV+GRPLI+Y++    S+G +L Q +
Sbjct: 2095 KLMKKGTPFVWDEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHN 2154

Query: 422  ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKY 481
            + G KE A YYLS+     E  Y+ +EK C AL++A K+LRHY++ H   LI+R D I+Y
Sbjct: 2155 DEG-KEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRY 2213

Query: 482  IFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDI 541
            +  +P +T ++ +W +L+ EYDI F  QKAIKG  LA+ LA  P+ D  P+  + PDE+I
Sbjct: 2214 VLSQPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEI 2273

Query: 542  MYLKSKDCEEPLIGEGPDPDSKWGLVFDG----DVNAYG-----KGIGAVIVSPQGHHIP 592
               + ++              +W L FDG    D+N  G      G G V  +PQG  I 
Sbjct: 2274 FTAELQE--------------QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIY 2319

Query: 593  FTARIL-FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLI 651
             +  +L  EC+NN AEYEA IFG+  A+ M ++ L  +GDS L+I QI   +E    +L+
Sbjct: 2320 HSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELV 2379

Query: 652  PYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSH 711
            PY   ARRL+  F  +E+ H+PR +N  ADAL  +++       N   I+  +R   P+ 
Sbjct: 2380 PYYTVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAV 2439

Query: 712  VFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDIL 771
            +  I + +N    N  ++  W      +      P      +++ L+R    ++    +L
Sbjct: 2440 LELIPEEVNIIITNSAEEEDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVL 2497

Query: 772  YKRNYDM-VLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 830
            YKR+Y   VLLRCVD  EA +++ +VH G  G H +G  M   +   GYYW  +  DC +
Sbjct: 2498 YKRSYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLK 2557

Query: 831  HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYY 890
             A+ CH CQI+ +  H PP  L+     WPF  WGID+IG I P +S GHRFIL A DY+
Sbjct: 2558 TAKTCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYF 2617

Query: 891  TKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 950
            +KW EA     V    V  F+  +II R+GVP +I +DN     +  +    E++KI+ +
Sbjct: 2618 SKWAEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWN 2677

Query: 951  ISSPYRPQMNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFS 1009
             S+ Y PQ NG  EA NK + KI++K V  + +DWH+ L  AL  YR TVR+ T ATP+S
Sbjct: 2678 YSTGYYPQANGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYS 2737

Query: 1010 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARM 1069
            LVYG EAVLPLE+++PSLRV +  +L++ E  + R+ +L+ VEE+R+ A+   + Y+  M
Sbjct: 2738 LVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNM 2797

Query: 1070 KTAFDKKVRPREFKGGE--LVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHM 1127
              A+DK V+ R F+ GE  LVL+R I      +GK+ P +EGPYV+++A+ GGA  L   
Sbjct: 2798 VRAYDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDH 2857

Query: 1128 DGVELPNPVNADIVKKYF 1145
             G +   P+N   +KKYF
Sbjct: 2858 QGSQPMPPINGRFLKKYF 2875


>UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  744 bits (1922), Expect = 0.0
 Identities = 428/1118 (38%), Positives = 635/1118 (56%), Gaps = 51/1118 (4%)

Query: 40   ELINLGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPT 99
            E++N+   +  R + VGA +   ++ ++  LL+     FAWS EDM G+DP I  H +  
Sbjct: 759  EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818

Query: 100  KPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 159
             P + PV+QK R+  P+ A  +  EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 819  DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878

Query: 160  VDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 219
            VD+ DL KA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M  +D+EKTSF+T 
Sbjct: 879  VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938

Query: 220  *GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKM 279
             GT+CYKVM FGL NAGATY R +  +  D I + VEVY+DDM+VKS   E HVE+L+K 
Sbjct: 939  RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998

Query: 280  FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 339
            F+ L  Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+  ++V+  
Sbjct: 999  FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058

Query: 340  LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEG 399
             GR+  ++RFIS  T  C P + LL++     W+ + + AF+ +K+YL  PPILV P  G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118

Query: 400  RPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAK 459
              L +Y++V D +V  VL ++D    ++  I+Y SK   + ETRY ++EK   A+V +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176

Query: 460  RLRHYLVNHTTWLISRMDQ-IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILA 518
            +LR Y  +HT  +++  DQ ++     P+ + ++ +W + LSEYDI F+ + A+K  +LA
Sbjct: 1177 KLRPYFQSHTIAVLT--DQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLA 1234

Query: 519  DHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKG 578
            D L   PL                    +  E  + G   +   +W L  DG  +A G G
Sbjct: 1235 DFLIELPL--------------------QSAERAVSG---NRGEEWSLYVDGSSSARGSG 1271

Query: 579  IGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQ 638
            IG  +VSP    +  + R+ F  TNN+AEYE  I G+  A  M+I  ++ + DS L+  Q
Sbjct: 1272 IGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQ 1331

Query: 639  IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDV 698
            + GE+E  + K+  Y    + +   F   +L  IPR +N  ADAL  ++    +   +D+
Sbjct: 1332 LSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDL 1387

Query: 699  -PIIKVQRLERPS----HVFTIEDMINRADG-NVVDDRPWYYDTKQFLLSREYPPGASNK 752
              II V+ +++PS        I + I  ++  +  D   W  + + +L     P      
Sbjct: 1388 RRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----S 1442

Query: 753  DKKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHT 809
            DK T RRL   A ++ L  + L K +    +L C+   E  ++M + H+G  G H+ G  
Sbjct: 1443 DKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRA 1502

Query: 810  MSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMI 869
            ++ KL + G+YW TM  DC     KC +CQ +A  IH P   L    +P+PF  W +D++
Sbjct: 1503 LALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIV 1562

Query: 870  GRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDN 929
            G +   AS   RFILV  DY+TKWVEA SYA +    V  F+   IICR+G+P +IITDN
Sbjct: 1563 GPM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDN 1620

Query: 930  GTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTYKD-WHEML 988
            G+   +   +  C  +KI  + S+P  PQ NG  EA NK I   ++K +   K  W + L
Sbjct: 1621 GSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADEL 1680

Query: 989  PYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQL 1048
               L  YRTT RS+T  TPF+  YGMEA+ P EV   SLR  M  K  E    +   D+L
Sbjct: 1681 DGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRL 1739

Query: 1049 NLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPD-PRGKWTPNY 1107
            + +EE R  A+ R Q+YQ      +++KV  R F  G+LVL++      +   GK   N+
Sbjct: 1740 DDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANW 1799

Query: 1108 EGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
            EG Y V K    G   L  M G  +P   N+  +K+Y+
Sbjct: 1800 EGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837


>UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1580

 Score =  744 bits (1921), Expect = 0.0
 Identities = 418/1109 (37%), Positives = 628/1109 (55%), Gaps = 66/1109 (5%)

Query: 44   LGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEY 103
            L + ++  EI +  A+ +G +  + +LL+E+ D F W Y +MPG    IVEHR+P KP  
Sbjct: 524  LMSADDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGV 582

Query: 104  PPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFR 163
             P +Q  RR   DM   +K+E+++  DAGF+    Y EWV++IVPV KK+GKVR+C+DFR
Sbjct: 583  RPHQQLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFR 642

Query: 164  DLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*--G 221
             L KA+PKD +P+   D LVD  +  K+ SFMDG +GYNQI M+ ED  KT+F  P   G
Sbjct: 643  YLNKATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIG 702

Query: 222  TFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFE 281
             F + V+ F L +AGATY R M  ++HD+I   VEVY+DD++VKSK+ E H+  L K+FE
Sbjct: 703  LFEWVVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFE 762

Query: 282  RLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLG 341
            R RKY L++NP KC FGV +G+ LGF+V ++GIEV    + AI+++  P+ + +++  +G
Sbjct: 763  RTRKYGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIG 822

Query: 342  RLNYISRFISHMTATCGPIFKLLR--KNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEG 399
            ++N++ RFIS ++    P   LLR   +Q   W  E Q A D+IK YL  PP+L+PP +G
Sbjct: 823  KINFVRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKG 882

Query: 400  RPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAK 459
             P  +YLS  D+S+  VL Q+ E  +KE  ++YLS++  + ETRY+ +EK C  L ++  
Sbjct: 883  IPFRLYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCT 940

Query: 460  RLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILAD 519
            RLRHYL+++   +I + D +KY+   P +  +I +W   L+E+D+ +++ KAIKG  +A+
Sbjct: 941  RLRHYLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIAN 1000

Query: 520  HLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGI 579
             +             D+ D+ I               G      W L FDG V  +G GI
Sbjct: 1001 FIV------------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGI 1033

Query: 580  GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQI 639
            G VI+SP+G    F   I    TNN AEYEA + G++   ++    + I GDS LVI+Q+
Sbjct: 1034 GLVIISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQL 1093

Query: 640  KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVP 699
             GE+E  +  LI Y +  + L+  F  V L H+ R++N  A+ L   +S ++        
Sbjct: 1094 AGEYECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYK-------- 1145

Query: 700  IIKVQRLERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRR 759
             + ++ ++    V T +D              W Y   Q+L         S    + LR 
Sbjct: 1146 -LMIKHVQIEVAVITADD--------------WRYYVYQYLQD------PSQSASRKLRY 1184

Query: 760  LAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGY 819
             A +++L  D LY R  D VLL+C+   +A+  + +VH+G  GTH + H M   L  AGY
Sbjct: 1185 KALKYILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGY 1244

Query: 820  YWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNG 879
            +W TM  DC+++ + C  CQ +      P  A+N I  PWPF  WGIDMIG I P +S G
Sbjct: 1245 FWPTMLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKG 1304

Query: 880  HRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQ 939
            H+FILVA DY+TKWVEA     V      +F++ +II R G+P  I TD G+   ++   
Sbjct: 1305 HKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFI 1364

Query: 940  ALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTT 998
               +   I+   SSPY  Q NG  EA+NK++ K++++ ++ Y + WH  L  AL  YR  
Sbjct: 1365 QFADSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMA 1424

Query: 999  VRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDA 1058
               S    P+ LVY  +A+LP EV I S R  ++  L+  E+     D+   + + R+ A
Sbjct: 1425 CHGSIQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRA 1484

Query: 1059 MARGQSYQARMKTAFDKKVRPREFKGGELVLK--RRISQQPDPRGKWTPNYEGPYVVKKA 1116
            +A+    + R+   ++KKV P++F  GEL+ K    I  +    GKW+PN+EGP+ + K 
Sbjct: 1485 LAKVIKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKV 1544

Query: 1117 FSGGALILTHMDGVELPNPVNADIVKKYF 1145
             S GA +L  +DG      +N   +KKY+
Sbjct: 1545 VSKGAYMLQGLDGEVYDRALNGKYLKKYY 1573


>UniRef100_Q8RZN9 Putative polyprotein [Oryza sativa]
          Length = 2001

 Score =  682 bits (1759), Expect = 0.0
 Identities = 389/1097 (35%), Positives = 615/1097 (55%), Gaps = 56/1097 (5%)

Query: 53   IKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRR 112
            I +G  LE+ ++ +I ++++E   +FAWS +++ G+D  ++EH +  K  Y P +QKLRR
Sbjct: 956  ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015

Query: 113  THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKD 172
               D     K E++K + A  +  V +PEW+AN V V K +GK RMC+DF DL KA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075

Query: 173  NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGL 232
            +FPLP ID LVD TA  ++ SF+D +SGY+Q+ M  ED EKTSFITP GT+C+  MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135

Query: 233  INAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNP 292
             NAGAT+ R +  +    + + VE Y+DD++VKSK    H + L + FE LRK  ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195

Query: 293  NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 352
             KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M  P+  ++V+   GR+  +SRF+S 
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255

Query: 353  MTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDES 412
                  P FK LR      W  ECQ AFD +K YL E P L  P +G+PL+MY++    +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315

Query: 413  VGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWL 472
            V  VL Q++E   ++  +Y++S+     +TRY+ +EK   A+V A+++LRHY ++H   +
Sbjct: 1316 VSAVLVQEEE--NRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373

Query: 473  ISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPI 532
             S    I  +     V  +IA+W M L  +D+ + ++ AIK  +LAD +A     ++ P 
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPN 1427

Query: 533  KFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIP 592
            + +         + ++ ++P           W +  DG  NA G G  AV+ +P    + 
Sbjct: 1428 EVE---------QQEEVKKP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467

Query: 593  FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIP 652
            ++ +++F  TNN AEYE  +  + +A  +  + L +  DS LV       +E     +  
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527

Query: 653  YRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFR--VNHWNDVPIIKVQRLERPS 710
            Y + AR    +F  + +  I R+EN  AD L   ++  +   N + D+       + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580

Query: 711  HVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDI 770
            +       I R       +  W     ++L+S + P     ++ K ++ ++ ++ +    
Sbjct: 1581 YEKKEVACIQR-------EGDWREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQ 1631

Query: 771  LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 830
            LYK      LL+CV   E  +++ ++H+G  G H    +++ K++R G YW T+  D  +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691

Query: 831  HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYY 890
            + + C  CQ +      PP  L  I   WPF  WGID++G + P+A    RF++VAI+Y+
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750

Query: 891  TKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 950
            ++W+EA + A +T   V KF+  NIICR+G+P +I+ DNG    +   Q +C+   ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810

Query: 951  ISSPYRPQMNGAVEAANKNIQKIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 1008
             +S   PQ NG VE AN  I + ++K +  +    W E L   L   RTTV  STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870

Query: 1009 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQAR 1068
             LVYG EA+ P EV   S R+I + K  E      R   L +++E R++A+ +  SY   
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925

Query: 1069 MKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMD 1128
             K+ +++KV+ R  + G+LVLK+ +++     GK    +EGP++VKK    GA  L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983

Query: 1129 GVELPNPVNADIVKKYF 1145
            G EL +  NA  +KK++
Sbjct: 1984 GEELKHTWNAVSLKKFY 2000


>UniRef100_Q8LMM6 Putative gag-pol [Oryza sativa]
          Length = 1986

 Score =  681 bits (1757), Expect = 0.0
 Identities = 404/1110 (36%), Positives = 597/1110 (53%), Gaps = 62/1110 (5%)

Query: 50   KREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQK 109
            + EI++ A  E      +   L+   DIFAW   DMPG+  +++EH +  K +  P++Q+
Sbjct: 924  REEIRLAATTESA----LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979

Query: 110  LRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKAS 169
            LRR   D    IK E+ K + AGF+  V +P+W+AN V V KK G+ RMCVD+ DL K+ 
Sbjct: 980  LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039

Query: 170  PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMP 229
            PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++   D  KTSFITP G +CY  MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099

Query: 230  FGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLR 289
            FGL NAGATY R +   F   I + VE YVDD++VK+K ++  +  L + F  +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159

Query: 290  LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 349
            LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M  P T+K V+   G +  +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219

Query: 350  ISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVF 409
            +S +     P FKLL+K     W  E Q AF+  K  L +PP+L  P    PL++Y+S  
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279

Query: 410  DESVGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
             + V  VL  +++E G   K +  IY++S+   D + RY  ++K    ++   ++L HY 
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYF 1339

Query: 466  VNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQP 525
              H+  +++       +  + A   +IA+W + L   DI FK + +IK   LAD +A   
Sbjct: 1340 QGHSVTVVTSFPLGDVLHNREA-NGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395

Query: 526  LDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVS 585
              ++   + D P E I +                    W + FDG     G G G V++S
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433

Query: 586  PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWET 645
            P G  + +   I F  ++N+AEYEA + G+  AI + IK L + GDS LV+NQ+  EW  
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493

Query: 646  HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQR 705
                ++ YR   R+L   F  +EL H+ R  N+ AD L    S  R    +DV    V+ 
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-RETAPSDV---FVEH 1549

Query: 706  LERPS--HVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGR 763
            L  P+  H  T +D   R    V  D  W     +FL S+E P     +DK    R++ R
Sbjct: 1550 LYTPTVPHKDTTQDADTRNIAMVEAD--WREPFIRFLTSQELP-----QDKDEAERISRR 1602

Query: 764  ---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 820
               ++L    LYK++   +L RCV   E  QL+ D+H G  G HA   T+  K  R G++
Sbjct: 1603 SKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1662

Query: 821  WMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGH 880
            W T   D  +  R C  CQ +A +IH+P   L  I   WPF++WG+DM+G  + KA  G+
Sbjct: 1663 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1721

Query: 881  RFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQA 940
              + VAID ++KW+EA     +T      F   NI+ R+GVP++IITDNGT     V + 
Sbjct: 1722 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKD 1780

Query: 941  LCEEFKIEHHISSPYRPQMNGAVEAANKNI-----QKIVQKMVTTYKDWHEMLPYALHGY 995
             CE+F I+   +S   P  NG VE AN  I      ++  ++      W + LP  L   
Sbjct: 1781 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSL 1840

Query: 996  RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKR 1055
            RTT   +TG +PF LVYG EA+LP EVE  SLR        E  + + R D L+ +EE R
Sbjct: 1841 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVR 1897

Query: 1056 MDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKK 1115
              A+ +   Y   ++   ++ VR R F  G+LVL++   Q    R K +P +EGP+++ +
Sbjct: 1898 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISE 1955

Query: 1116 AFSGGALILTHMDGVELPNPVNADIVKKYF 1145
                G+  L   DG  + N  N + +++++
Sbjct: 1956 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985


>UniRef100_Q7X6L5 OSJNBb0093G06.3 protein [Oryza sativa]
          Length = 1986

 Score =  680 bits (1754), Expect = 0.0
 Identities = 404/1112 (36%), Positives = 601/1112 (53%), Gaps = 66/1112 (5%)

Query: 50   KREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQK 109
            + EI++ A  E      +   L+   DIFAW   DMPG+  +++EH +  K +  P++Q+
Sbjct: 924  REEIRLAATTESA----LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979

Query: 110  LRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKAS 169
            LRR   D    IK E+ K + AGF+  V +P+W+AN V V KK G+ RMCVD+ DL K+ 
Sbjct: 980  LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039

Query: 170  PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMP 229
            PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++   D  KTSFITP G +CY  MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099

Query: 230  FGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLR 289
            FGL NAGATY R +   F   I + VE YVDD++VK+K ++  +  L + F  +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159

Query: 290  LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 349
            LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M  P T+K V+   G +  +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219

Query: 350  ISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVF 409
            +S +     P FKLL+K     W  E Q AF+  K  L +PP+L  P    PL++Y+S  
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279

Query: 410  DESVGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
             + V  VL  +++E G   K +  IY++S+   D +TRY  ++K    ++   ++L HY 
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1339

Query: 466  VNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQP 525
              H+  +++       +  + A   +IA+W + L   DI FK + +IK   LAD +A   
Sbjct: 1340 QGHSVTVVTSFPLGDVLHNREA-NGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395

Query: 526  LDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVS 585
              ++   + D P E I +                    W + FDG     G G G V++S
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433

Query: 586  PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWET 645
            P G  + +   I F  ++N+AEYEA + G+  AI + IK L + GDS LV+NQ+  EW  
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493

Query: 646  HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQR 705
                ++ YR   R+L   F  +EL H+ R  N+ AD L    S  R    +DV    V+ 
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDV---FVEH 1549

Query: 706  LERPS--HVFTIEDMINRADGN--VVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLA 761
            L  P+  H  T +D    AD +  V+ +  W     +FL S+E P     +DK    R++
Sbjct: 1550 LYTPTVPHKDTTQD----ADTHDVVMVEADWREPFIRFLSSQELP-----QDKDEAERIS 1600

Query: 762  GR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 818
             R   +++    LYK++   +L RCV   E  QL+ D+H G  G HA   T+  K  R G
Sbjct: 1601 RRSKLYVMHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQG 1660

Query: 819  YYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASN 878
            ++W T   D  +  R C  CQ +A +IH+P   L  I   WPF++WG+DM+G  + KA  
Sbjct: 1661 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVG 1719

Query: 879  GHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVV 938
            G+  + VAID ++KW+EA     +T      F   NI+ R+GVP++IITDNGT     V 
Sbjct: 1720 GYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVF 1778

Query: 939  QALCEEFKIEHHISSPYRPQMNGAVEAANKNI-----QKIVQKMVTTYKDWHEMLPYALH 993
            +  CE+F I+   +S   P  NG VE AN  I      ++  ++      W + LP  L 
Sbjct: 1779 KDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLW 1838

Query: 994  GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEE 1053
              RTT   +TG +PF LVYG EA+LP EVE  SLR        E  + + R D L+ +EE
Sbjct: 1839 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1895

Query: 1054 KRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVV 1113
             R  A+ +   Y   ++   ++ VR R F  G+LVL++   Q    R K +P +EGP+++
Sbjct: 1896 AREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1953

Query: 1114 KKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
             +    G+  L   DG  + N  N + +++++
Sbjct: 1954 SEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985


>UniRef100_Q7XXB9 OSJNBa0027O01.4 protein [Oryza sativa]
          Length = 2013

 Score =  678 bits (1749), Expect = 0.0
 Identities = 396/1082 (36%), Positives = 585/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 973  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1032

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1033 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1092

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1093 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1152

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1153 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1212

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1213 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1272

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1273 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1332

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++    +  I     V  +
Sbjct: 1333 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGR 1391

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1392 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1438

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1439 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1486

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1487 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSH 1546

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S  R    +DV    V+ L  P+        +       + +  
Sbjct: 1547 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVAGTHDAAMVEVD 1602

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   ++L    LYK++   +L RCV   E
Sbjct: 1603 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1657

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1658 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1717

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1718 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1776

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1777 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1835

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1836 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1895

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ VR R F 
Sbjct: 1896 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFL 1952

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1953 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2010

Query: 1144 YF 1145
            ++
Sbjct: 2011 FY 2012


>UniRef100_Q7X8E7 OSJNBa0042F21.5 protein [Oryza sativa]
          Length = 1950

 Score =  677 bits (1746), Expect = 0.0
 Identities = 397/1084 (36%), Positives = 585/1084 (53%), Gaps = 58/1084 (5%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 910  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 970  EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPPIL  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++    +  I        +
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPS--HVFTIEDMINRADGNVVDD 729
            + R  N+ AD L    S   +   +    + V+ L  P+  H  T +D        V  D
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSD----VFVEHLYTPTVPHKDTTQDADTHDVALVEAD 1539

Query: 730  RPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 786
              W     +FL S+E P     +DK    R++ R   + +    LYK++   +L RCV  
Sbjct: 1540 --WREPFIRFLTSQELP-----QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSL 1592

Query: 787  HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIH 846
             E  QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH
Sbjct: 1593 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1652

Query: 847  VPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQV 906
            +P   L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T   
Sbjct: 1653 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1711

Query: 907  VAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAA 966
               F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE A
Sbjct: 1712 ARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1770

Query: 967  NKNI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 1021
            N  I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP E
Sbjct: 1771 NGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1830

Query: 1022 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPRE 1081
            VE  SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ VR R 
Sbjct: 1831 VEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRA 1887

Query: 1082 FKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 1141
            F  G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +
Sbjct: 1888 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHL 1945

Query: 1142 KKYF 1145
            ++++
Sbjct: 1946 RRFY 1949


>UniRef100_Q7XPQ7 OSJNBa0053K19.16 protein [Oryza sativa]
          Length = 2010

 Score =  676 bits (1745), Expect = 0.0
 Identities = 391/1082 (36%), Positives = 583/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 970  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1029

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1030 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFL 1089

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1090 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1149

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKL+GF+VS +GI+
Sbjct: 1150 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQ 1209

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1210 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1269

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1270 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1329

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++    +  I        +
Sbjct: 1330 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1388

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1389 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1435

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1436 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1483

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1484 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1543

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S   V   +    + V+ L  P+        +       + +  
Sbjct: 1544 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVETD 1599

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1600 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1654

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1655 GRQLLQDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1714

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1715 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1773

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1774 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1832

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1833 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1892

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ VR R F 
Sbjct: 1893 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFL 1949

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1950 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2007

Query: 1144 YF 1145
            ++
Sbjct: 2008 FY 2009


>UniRef100_Q8GSW6 Putative gag-pol polyprotein [Oryza sativa]
          Length = 2012

 Score =  675 bits (1742), Expect = 0.0
 Identities = 395/1082 (36%), Positives = 584/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 972  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+  MCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M +P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++    +  I        +
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ +        
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S  R    +DV    V+ L  P+           A    + +  
Sbjct: 1546 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQAAGAHDVAMVEAD 1601

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   ++L    LYK++   +L RCV   E
Sbjct: 1602 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1656

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1657 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1716

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1717 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1775

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1776 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1834

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1835 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVE 1894

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ VR R F 
Sbjct: 1895 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1951

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1952 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2009

Query: 1144 YF 1145
            ++
Sbjct: 2010 FY 2011


>UniRef100_Q75KG5 Putative polyprotein [Oryza sativa]
          Length = 1991

 Score =  675 bits (1741), Expect = 0.0
 Identities = 397/1105 (35%), Positives = 593/1105 (52%), Gaps = 52/1105 (4%)

Query: 50   KREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQK 109
            + EI++ A  E      +   L+   DIFAW   DMPG+  +++EH +  K +  P++Q+
Sbjct: 929  REEIRLAATTESA----LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 984

Query: 110  LRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKAS 169
            LRR   D    IK E+ K + AGF+  V +P+W+AN V V KK G+ RMCVD+ DL K+ 
Sbjct: 985  LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1044

Query: 170  PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMP 229
            PKD F LP ID +VD+TA  ++ SF+D +SGY+QI++   D  KTSFITP G +CY  MP
Sbjct: 1045 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1104

Query: 230  FGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLR 289
            FGL NAGATY R +   F   I + VE YVDD++VK+K ++  +  L + F  +R ++++
Sbjct: 1105 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMK 1164

Query: 290  LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 349
            LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI  M  P T+K V+   G +  +SRF
Sbjct: 1165 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1224

Query: 350  ISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVF 409
            +S +     P FKLL+K     W  E Q AF+  K  L +PP+L  P    PL++Y+S  
Sbjct: 1225 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1284

Query: 410  DESVGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
             + V  VL  +++E G   K +  IY++S+   D +TRY  ++K    ++   ++L HY 
Sbjct: 1285 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1344

Query: 466  VNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQP 525
              H+  +++       +  + A   +IA+W + L   DI FK + +IK   LAD +A   
Sbjct: 1345 QGHSVTVVTSFPLGDVLHNREA-NGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1400

Query: 526  LDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVS 585
              ++   + D P E I +                    W + FDG     G G G V++S
Sbjct: 1401 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1438

Query: 586  PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWET 645
            P G  + +   I F  ++N+AEYEA + G+  AI + IK L + GDS LV+NQ+  EW  
Sbjct: 1439 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1498

Query: 646  HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQR 705
                ++ YR   R+L   F  +EL H+ R  N+ AD L    S  R    +DV    V+ 
Sbjct: 1499 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDV---FVEH 1554

Query: 706  LERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFL 765
            L  P+        +       + +  W     +FL S+E P      ++  + R +  ++
Sbjct: 1555 LYSPTVPHKDATQVADTHDIAMVEADWREPLIRFLTSQELPQYKDEAER--ISRRSKLYV 1612

Query: 766  LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTME 825
            +    LYK++   +L RCV   E  QL+ D+H G  G HA   T+  K  R G++W T  
Sbjct: 1613 MHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAV 1672

Query: 826  HDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILV 885
             D  +  R C  CQ +A +IH+P   L  I   WPF++WG+DM+G  + KA  G+  + +
Sbjct: 1673 SDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFM 1731

Query: 886  AIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEF 945
            AID ++KW+EA     +T      F   NI+ R+GVP++IITDNGT     V +  CE+F
Sbjct: 1732 AIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDF 1790

Query: 946  KIEHHISSPYRPQMNGAVEAANKNI-QKIVQKMVTTYK----DWHEMLPYALHGYRTTVR 1000
             I+   +S   P  NG VE AN  I Q+I  ++    K     W   LP  L   RTT  
Sbjct: 1791 GIKICYASVAHPMSNGQVERANGMILQRIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPS 1850

Query: 1001 SSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMA 1060
             +TG +PF LVYG EA+LP EVE  SLR        E  + + R D L+ +EE R  A+ 
Sbjct: 1851 RATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALI 1907

Query: 1061 RGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGG 1120
            +   Y   ++   ++ VR R F  G+LVL++   Q    R K +P +EGP+++ +    G
Sbjct: 1908 QSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPG 1965

Query: 1121 ALILTHMDGVELPNPVNADIVKKYF 1145
            +  L   DG  + N  N + +++++
Sbjct: 1966 SYRLKREDGTLVDNSWNIEHIRRFY 1990


>UniRef100_Q8W3B5 Putative gag-pol [Oryza sativa]
          Length = 2026

 Score =  674 bits (1739), Expect = 0.0
 Identities = 391/1082 (36%), Positives = 580/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++    +  I        +
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + +        
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S   V   +    + V+ L  P+        +       + +  
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVEAD 1606

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAP 1780

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W E LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ VR R F 
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++      G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014

Query: 1144 YF 1145
            ++
Sbjct: 2015 FY 2016


>UniRef100_Q8S7A3 Putative retroelement [Oryza sativa]
          Length = 2017

 Score =  673 bits (1737), Expect = 0.0
 Identities = 391/1082 (36%), Positives = 579/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K  PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H   +++    +  I        +
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + +        
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S   V   +    + V+ L  P+        +       + +  
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAPSD----VFVEHLYAPTVPHKDTTQVAGTHDVAMVEAD 1606

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W E LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ VR R F 
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRR 2014

Query: 1144 YF 1145
            ++
Sbjct: 2015 FY 2016


>UniRef100_Q75IS9 Putative polyprotein [Oryza sativa]
          Length = 1756

 Score =  673 bits (1736), Expect = 0.0
 Identities = 390/1082 (36%), Positives = 581/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 716  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIK 775

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K  PKD F LP ID +VD+TA  ++ SF+
Sbjct: 776  EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 835

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 836  DCYSGYHQIRLKESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 895

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD+++K+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 896  EAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 955

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 956  ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1015

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K +L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1016 AQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1075

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++    +  I        +
Sbjct: 1076 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1134

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + +        
Sbjct: 1135 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1181

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1182 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1229

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1230 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1289

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S   V   +    + V+ L  P+        I       + +  
Sbjct: 1290 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1345

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1346 WREPFIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1400

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1401 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1460

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1461 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1519

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1520 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1578

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1579 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1638

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ VR R F 
Sbjct: 1639 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1695

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1696 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 1753

Query: 1144 YF 1145
            ++
Sbjct: 1754 FY 1755


>UniRef100_Q8LMM4 Putative gag-pol [Oryza sativa]
          Length = 2017

 Score =  671 bits (1730), Expect = 0.0
 Identities = 391/1082 (36%), Positives = 581/1082 (53%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG-QQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY   H+  +++       +  + A  R 
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGR- 1395

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   D+ FK + +IK   LAD +A                      +  +C+E
Sbjct: 1396 IAKWALELMSLDLSFKPRISIKSQALADFVA----------------------EWTECQE 1433

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                +  +    W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1434 DTTVKKME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      +  YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSH 1550

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R +N+ AD L    S   V   +    + V+ L  P+                + +  
Sbjct: 1551 VLRHDNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQAAGIHDVAMVETD 1606

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ R   Y   ++   ++ VR R F 
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFL 1956

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRR 2014

Query: 1144 YF 1145
            ++
Sbjct: 2015 FY 2016


>UniRef100_Q7XWE4 OSJNBa0035O13.3 protein [Oryza sativa]
          Length = 2008

 Score =  665 bits (1717), Expect = 0.0
 Identities = 392/1091 (35%), Positives = 580/1091 (52%), Gaps = 68/1091 (6%)

Query: 67   IFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQ 126
            +   L+   DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ 
Sbjct: 973  LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032

Query: 127  KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNT 186
            K + AGF+  V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092

Query: 187  AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTL 246
            A  ++ SF+D +SGY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152

Query: 247  FHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 306
            F   I + VE YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212

Query: 307  FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 366
            F+VS +GI+ +P+KV AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272

Query: 367  NQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG-QQDETG- 424
                 W  E Q AF+  K  L EPP+L  P    PL++Y+S   + V  VL  +++E G 
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332

Query: 425  --KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYI 482
              K +  IY++S+   D +TRY  ++K               L  H+  +++    +  I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377

Query: 483  FEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIM 542
                    +IA+W + L   DI FK + +IK   LAD +A     ++   + D P E++ 
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432

Query: 543  YLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECT 602
            +                    W + FDG     G G G V++SP G  + +   I F  +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472

Query: 603  NNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLT 662
            +N+AEYEA + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L  
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532

Query: 663  YFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRA 722
             F  +EL H+ R  N+ AD L    S   V   +    + V+ L  P+        +   
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGT 1588

Query: 723  DGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMV 779
                V +  W     +FL S+E P     +DK    R++ R   +++    LYK++   +
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGI 1643

Query: 780  LLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQ 839
            L RCV   E  QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ
Sbjct: 1644 LQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQ 1703

Query: 840  IYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASY 899
             +A +IH+P   L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA   
Sbjct: 1704 FFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPV 1762

Query: 900  ANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQM 959
              +T      F   NI+ R+GVP++IITDNGT     V +  CE+F I+   +S   P  
Sbjct: 1763 VTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1821

Query: 960  NGAVEAANKNI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGM 1014
            NG VE AN  I      ++  ++      W + LP  L   RTT   +TG +PF LVYG 
Sbjct: 1822 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1881

Query: 1015 EAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFD 1074
            EA+LP EVE  SLR        E  + + R D L+ +EE R  A+ R   Y   ++   +
Sbjct: 1882 EAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1938

Query: 1075 KKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPN 1134
            + VR R F  G+LVL++   Q    R K +P +EGP+++ +    G+  L   DG  + N
Sbjct: 1939 RNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996

Query: 1135 PVNADIVKKYF 1145
              N + +++++
Sbjct: 1997 SWNIEHLRRFY 2007


>UniRef100_Q93Y89 Gag-pol [Oryza sativa]
          Length = 2017

 Score =  664 bits (1714), Expect = 0.0
 Identities = 386/1082 (35%), Positives = 579/1082 (52%), Gaps = 54/1082 (4%)

Query: 76   DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
            DIFAW   DMPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+ 
Sbjct: 977  DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036

Query: 136  TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
             V +P+W+AN V V KK G+ RMCVD+ DL  + PKD F LP ID +VD+TA  ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096

Query: 196  DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
            D + GY+QI++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + V
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156

Query: 256  EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
            E YVDD++VK+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216

Query: 316  VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
             +P+K+ AI  M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  +
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276

Query: 376  CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
             Q AF+  K  L EPP+L  P    PL++Y++   + V  VL  +++E G   K +  IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336

Query: 432  YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
            ++S+   D +TRY  ++K    ++   ++L HY  +H+  +++    +  I        +
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSF-SLGDILHNREANGR 1395

Query: 492  IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
            IA+W + L   DI FK + +IK   LAD +A     ++   + D P E + +        
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442

Query: 552  PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
                        W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA 
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490

Query: 612  IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
            + G+  AI + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550

Query: 672  IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
            + R  N+ AD L    S   V   +    + V+ L  P+        I       + +  
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1606

Query: 732  WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
            W     +FL S+E P     +DK    R++ R   +++    LYK++   +L RCV   E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661

Query: 789  AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
              QL+ D+H G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721

Query: 849  PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
               L  I   WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T     
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780

Query: 909  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
             F   NI+ R+GVP++IITDNG      V +  CE+F I+   +S   P  NG VE AN 
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839

Query: 969  NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
             I      ++  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899

Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
              SLR        E  + + R D L+ +EE R  A+ +   Y   ++   ++ VR R F 
Sbjct: 1900 FESLRF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956

Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
             G+LVL++   Q    R K +P +EGP+++      G+  L   DG  + N  N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014

Query: 1144 YF 1145
            ++
Sbjct: 2015 FY 2016


>UniRef100_Q9SSW6 GAG-POL [Oryza sativa]
          Length = 1032

 Score =  662 bits (1708), Expect = 0.0
 Identities = 388/1073 (36%), Positives = 577/1073 (53%), Gaps = 54/1073 (5%)

Query: 85   MPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 144
            MPG+  +++EH +  K +  P++Q+LRR   D    IK E+ K + AGF+  V +P+W+A
Sbjct: 1    MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLA 60

Query: 145  NIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 204
            N V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA  ++ SF+D +SGY+QI
Sbjct: 61   NPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQI 120

Query: 205  KMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIV 264
            ++   D  KTSFITP G +CY  MPFGL NAGATY R +   F   I + VE YVDD++V
Sbjct: 121  RLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVV 180

Query: 265  KSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 324
            K+K ++  +  L + F  +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI
Sbjct: 181  KTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAI 240

Query: 325  REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIK 384
              M  P T+K V+   G +  +SRF+S +     P FKLL+K     W  E Q AF+  K
Sbjct: 241  LNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFK 300

Query: 385  NYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIYYLSKKFTDC 440
              L EPP+L  P    PL++Y+S   + V  VL  +++E G   K +  IY++S+   D 
Sbjct: 301  KLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADS 360

Query: 441  ETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLS 500
            +TRY  ++K    ++   ++L HY   H+  +++    +  I        +IA+W + L 
Sbjct: 361  KTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELM 419

Query: 501  EYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDP 560
              DI FK + +IK   LAD +A     ++   + D P E + +                 
Sbjct: 420  SLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH----------------- 457

Query: 561  DSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAID 620
               W + FDG     G G G V++SP G  + +   I F  ++N+AEYEA + G+  AI 
Sbjct: 458  ---WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSTSHNVAEYEALLHGLRIAIS 514

Query: 621  MRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMA 680
            + IK L + GDS LV+NQ+  EW      ++ YR   R+L   F  +EL H+ R  N+ A
Sbjct: 515  LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 574

Query: 681  DALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFL 740
            D L    S  R    +DV    V+ L  P+        +       + +  W     +FL
Sbjct: 575  DRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVADTHDIAMVEADWREPLIRFL 630

Query: 741  LSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVH 797
             S+E P     +DK    R++ R   +++    LYK++   +L RCV   E  QL+ D+H
Sbjct: 631  TSQELP-----RDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 685

Query: 798  DGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISS 857
             G  G HA   T+  K  R G++W T   D  +  R C  CQ +A +IH+P   L  I  
Sbjct: 686  SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 745

Query: 858  PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIIC 917
             WPF++WG+DM+G  + KA  G+  + VAID ++KW+EA     +T      F   NI+ 
Sbjct: 746  SWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVH 803

Query: 918  RYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNI-----QK 972
            R+GVP++IITDNGT     V +  CE+F I+   +S   P  NG VE AN  I      +
Sbjct: 804  RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 863

Query: 973  IVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 1032
            +  ++      W + LP  L   RTT   +TG +PF LVYG EA+LP EVE  SLR    
Sbjct: 864  VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF--- 920

Query: 1033 AKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRR 1092
                E  + + R D L+ +EE R  A+ R   Y   ++   ++ VR R F  G+LVL++ 
Sbjct: 921  RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK- 979

Query: 1093 ISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
              Q    R K +P +EGP+++ +    G+  L   DG  + N  N + +++++
Sbjct: 980  -IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1031


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.322    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,022,392,190
Number of Sequences: 2790947
Number of extensions: 90540249
Number of successful extensions: 213094
Number of sequences better than 10.0: 5466
Number of HSP's better than 10.0 without gapping: 4644
Number of HSP's successfully gapped in prelim test: 823
Number of HSP's that attempted gapping in prelim test: 197063
Number of HSP's gapped (non-prelim): 8985
length of query: 1145
length of database: 848,049,833
effective HSP length: 138
effective length of query: 1007
effective length of database: 462,899,147
effective search space: 466139441029
effective search space used: 466139441029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)