BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147964.4 + phase: 0 /pseudo
(276 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q42404 U1 small nuclear ribonucleoprotein 70 kDa [Arab... 433 e-120
UniRef100_Q94LP1 Putative U1 small nuclear ribonucleoprotein [Or... 394 e-108
UniRef100_Q6E0J0 U1 snRNP [Zea mays] 392 e-108
UniRef100_Q42404-2 Splice isoform Short of Q42404 [Arabidopsis t... 279 5e-74
UniRef100_UPI00001CE8C1 UPI00001CE8C1 UniRef100 entry 251 1e-65
UniRef100_P08621-2 Splice isoform 2 of P08621 [Homo sapiens] 251 1e-65
UniRef100_P08621 U1 small nuclear ribonucleoprotein 70 kDa [Homo... 250 2e-65
UniRef100_Q66II8 Snrp70-prov protein [Xenopus tropicalis] 246 5e-64
UniRef100_Q6DRE8 U1 small ribonucleoprotein 70kd [Brachydanio re... 240 3e-62
UniRef100_Q6DEM1 Hypothetical protein [Brachydanio rerio] 239 7e-62
UniRef100_Q66J82 Hypothetical protein [Xenopus laevis] 238 1e-61
UniRef100_P09406 U1 small nuclear ribonucleoprotein 70 kDa [Xeno... 238 1e-61
UniRef100_Q7QIA8 ENSANGP00000020311 [Anopheles gambiae str. PEST] 227 3e-58
UniRef100_Q5TWF8 ENSANGP00000028567 [Anopheles gambiae str. PEST] 225 1e-57
UniRef100_Q6E0I8 U1 snRNP [Zea mays] 224 2e-57
UniRef100_P17133 U1 small nuclear ribonucleoprotein 70 kDa [Dros... 219 8e-56
UniRef100_UPI000018106E UPI000018106E UniRef100 entry 213 3e-54
UniRef100_Q62376 U1 small nuclear ribonucleoprotein 70 kDa [Mus ... 213 3e-54
UniRef100_Q09584 Rnp (Rrm rna binding domain) containing protein... 184 2e-45
UniRef100_Q7RTB4 U1 small nuclear ribonucleoprotein 70 kDa [Plas... 184 3e-45
>UniRef100_Q42404 U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis thaliana]
Length = 427
Score = 433 bits (1113), Expect = e-120
Identities = 212/275 (77%), Positives = 238/275 (86%), Gaps = 4/275 (1%)
Query: 3 DPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 62
DP LRN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 63 KCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYD 122
KCPP TGMAQFVS FAEPG+PEY+PP P VE P+++R R+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIE 182
P+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKRV LVTD +NKP+GYAFIE
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 183 YLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRH 242
Y+HTRDMKAAYKQADG+KI+GRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGG E
Sbjct: 186 YMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE---EI 242
Query: 243 SGREQQQSGPSRSEEP-RVREERHADRDREKSRER 276
G +Q Q S+SEEP R REER R++ K RER
Sbjct: 243 VGEQQPQGRTSQSEEPSRPREEREKSREKGKERER 277
>UniRef100_Q94LP1 Putative U1 small nuclear ribonucleoprotein [Oryza sativa]
Length = 491
Score = 394 bits (1011), Expect = e-108
Identities = 197/292 (67%), Positives = 230/292 (78%), Gaps = 30/292 (10%)
Query: 13 VQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQ 72
+Q+RTK Q R NV QLKL+GQ HPTGLT NLLKLFEPRPPL++KPP EKRK P TGMAQ
Sbjct: 18 MQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQ 76
Query: 73 FVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGD 132
FVS+FAEPG+PEY+PPVP ET AE++ R+ K +L++GAAK AEEL+KYDP +DPN +GD
Sbjct: 77 FVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGD 136
Query: 133 PYKTLFVARLSYETTESRIKREFESYGAIKR----------------------------V 164
PYKTLFVARL+YET+E R+KREFE+YG IKR V
Sbjct: 137 PYKTLFVARLNYETSEHRVKREFEAYGPIKRQTSLKNVGDGTTYLQAWGFYILGFIRLLV 196
Query: 165 RLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRL 224
RLVTD E+NKPRGYAFIEY+HTRDMK AYKQADGRK++ RRVLVDVERGRTVPNWRPRRL
Sbjct: 197 RLVTDKETNKPRGYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRPRRL 256
Query: 225 GGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSRER 276
GGGLG++R+GG+ Q+ S R+QQ +G RSEEPR R+ER ADRDREKSRER
Sbjct: 257 GGGLGSSRIGGENAEQKLSTRDQQHAGRPRSEEPR-RDERRADRDREKSRER 307
>UniRef100_Q6E0J0 U1 snRNP [Zea mays]
Length = 491
Score = 392 bits (1008), Expect = e-108
Identities = 191/255 (74%), Positives = 219/255 (84%), Gaps = 1/255 (0%)
Query: 22 RANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPG 81
R NV QLKL+GQ HPTGLT NLLKLFEPRPPLEYKPP EKRK P TGMAQFVS FAEP
Sbjct: 25 RPNVQQLKLMGQIHPTGLTPNLLKLFEPRPPLEYKPPLEKRKLPAYTGMAQFVSHFAEPE 84
Query: 82 EPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAR 141
+PEY+PPVP ET AE++AR+ +LE+GAAK AEEL+KYDP +DPN +GDPYKTLFVAR
Sbjct: 85 DPEYAPPVPKCETRAEKKARIRNNKLEQGAAKVAEELQKYDPQSDPNATGDPYKTLFVAR 144
Query: 142 LSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKI 201
L+YET+E RIKREFE YG IKRVRLVT+ +++KPRGYAFIEY+HTRDMK AY ADGRK+
Sbjct: 145 LNYETSEQRIKREFEGYGPIKRVRLVTEKDTSKPRGYAFIEYVHTRDMKNAYPAADGRKV 204
Query: 202 EGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVR 261
+ RRVLVDVERGRTVPNWRPRRLGGGLG+TR+GG + +++ S REQQQ G RSEEPR R
Sbjct: 205 DNRRVLVDVERGRTVPNWRPRRLGGGLGSTRMGGTDTDKKDSTREQQQGGRPRSEEPR-R 263
Query: 262 EERHADRDREKSRER 276
++R ADRDREKSRER
Sbjct: 264 DDRRADRDREKSRER 278
>UniRef100_Q42404-2 Splice isoform Short of Q42404 [Arabidopsis thaliana]
Length = 204
Score = 279 bits (714), Expect = 5e-74
Identities = 131/162 (80%), Positives = 147/162 (89%)
Query: 3 DPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 62
DP LRN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 63 KCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYD 122
KCPP TGMAQFVS FAEPG+PEY+PP P VE P+++R R+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRV 164
P+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKRV
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167
>UniRef100_UPI00001CE8C1 UPI00001CE8C1 UniRef100 entry
Length = 397
Score = 251 bits (642), Expect = 1e-65
Identities = 130/244 (53%), Positives = 162/244 (66%), Gaps = 9/244 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRS-EEPRVREERHADRDREK 272
RTV WRPRRLGGGLG TR GG +VN RHSGR+ R + R RE R R+R+K
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRDRERERRERSRERDK 241
Query: 273 SRER 276
RER
Sbjct: 242 ERER 245
>UniRef100_P08621-2 Splice isoform 2 of P08621 [Homo sapiens]
Length = 428
Score = 251 bits (642), Expect = 1e-65
Identities = 130/244 (53%), Positives = 162/244 (66%), Gaps = 9/244 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRS-EEPRVREERHADRDREK 272
RTV WRPRRLGGGLG TR GG +VN RHSGR+ R + R RE R R+R+K
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRDRERERRERSRERDK 241
Query: 273 SRER 276
RER
Sbjct: 242 ERER 245
>UniRef100_P08621 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapiens]
Length = 437
Score = 250 bits (639), Expect = 2e-65
Identities = 132/253 (52%), Positives = 166/253 (65%), Gaps = 18/253 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREE 263
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS + R RE
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 241
Query: 264 RHADRDREKSRER 276
R R+R+K RER
Sbjct: 242 RERSRERDKERER 254
>UniRef100_Q66II8 Snrp70-prov protein [Xenopus tropicalis]
Length = 471
Score = 246 bits (628), Expect = 5e-64
Identities = 128/244 (52%), Positives = 161/244 (65%), Gaps = 9/244 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRS-EEPRVREERHADRDREK 272
RTV WRPRRLGGGLG TR GG +VN RHSGR+ R + R R+ R R+R+K
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRERERDRRERSRERDK 241
Query: 273 SRER 276
RER
Sbjct: 242 ERER 245
>UniRef100_Q6DRE8 U1 small ribonucleoprotein 70kd [Brachydanio rerio]
Length = 495
Score = 240 bits (612), Expect = 3e-62
Identities = 126/247 (51%), Positives = 161/247 (65%), Gaps = 14/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKP-----PPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ + P P EK P G+A F+ F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + ++ KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGR------EQQQSGPSRSEEPRVREERHAD 267
RTV WRPRRLGGGLG TR GG +VN +HSGR + + G R + R ER +
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSDRDRDRGERRERSRE 241
Query: 268 RDREKSR 274
RDR+K R
Sbjct: 242 RDRDKER 248
>UniRef100_Q6DEM1 Hypothetical protein [Brachydanio rerio]
Length = 306
Score = 239 bits (609), Expect = 7e-62
Identities = 125/247 (50%), Positives = 161/247 (64%), Gaps = 14/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKP-----PPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ + P P EK P G+A F+ F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + ++ +PRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIYIVYNKKTGRPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGR------EQQQSGPSRSEEPRVREERHAD 267
RTV WRPRRLGGGLG TR GG +VN +HSGR + + G R + R ER +
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSDRDRDRGERRERSRE 241
Query: 268 RDREKSR 274
RDR+K R
Sbjct: 242 RDRDKER 248
>UniRef100_Q66J82 Hypothetical protein [Xenopus laevis]
Length = 267
Score = 238 bits (607), Expect = 1e-61
Identities = 130/247 (52%), Positives = 161/247 (64%), Gaps = 13/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R R+ R R+R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE-RERDRRERSRER 240
Query: 271 EKS-RER 276
EK RER
Sbjct: 241 EKEPRER 247
>UniRef100_P09406 U1 small nuclear ribonucleoprotein 70 kDa [Xenopus laevis]
Length = 471
Score = 238 bits (607), Expect = 1e-61
Identities = 130/247 (52%), Positives = 161/247 (64%), Gaps = 13/247 (5%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R R+ R R+R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE-RERDRRERSRER 240
Query: 271 EKS-RER 276
EK RER
Sbjct: 241 EKEPRER 247
>UniRef100_Q7QIA8 ENSANGP00000020311 [Anopheles gambiae str. PEST]
Length = 434
Score = 227 bits (578), Expect = 3e-58
Identities = 120/240 (50%), Positives = 159/240 (66%), Gaps = 8/240 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPPPEK----RKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L +NLL LF PR P+ Y PPP+K +K G+ F+ F +P + +PP VET
Sbjct: 5 LPSNLLALFAPRDPIPYLPPPDKLPHEKKSQGYLGVGAFLDCFEDPKD---TPPPTRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K E+ +DP+ + DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERVERRRRERAEQVAYKLEREIATWDPNQLLEATEDPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ ++ D ++ KPRGYAFIEY H RDM AAYK ADG+KI+G+RVLVDVER R
Sbjct: 122 FEIYGNIKKIIMINDKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREER-HADRDREKS 273
TV W PRRLGGGLG TR GG +VN +HSGRE + R R RE+R +RDR ++
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNERERERYRLEREREDRDRRERDRPEN 241
>UniRef100_Q5TWF8 ENSANGP00000028567 [Anopheles gambiae str. PEST]
Length = 398
Score = 225 bits (573), Expect = 1e-57
Identities = 119/235 (50%), Positives = 156/235 (65%), Gaps = 8/235 (3%)
Query: 39 LTANLLKLFEPRPPLEYKPPPEK----RKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L +NLL LF PR P+ Y PPP+K +K G+ F+ F +P + +PP VET
Sbjct: 5 LPSNLLALFAPRDPIPYLPPPDKLPHEKKSQGYLGVGAFLDCFEDPKD---TPPPTRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K E+ +DP+ + DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERVERRRRERAEQVAYKLEREIATWDPNQLLEATEDPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ ++ D ++ KPRGYAFIEY H RDM AAYK ADG+KI+G+RVLVDVER R
Sbjct: 122 FEIYGNIKKIIMINDKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREER-HADR 268
TV W PRRLGGGLG TR GG +VN +HSGRE + R R RE+R H +R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNERERERYRLEREREDRDHLNR 236
>UniRef100_Q6E0I8 U1 snRNP [Zea mays]
Length = 193
Score = 224 bits (570), Expect = 2e-57
Identities = 108/143 (75%), Positives = 121/143 (84%)
Query: 22 RANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPG 81
R NV QLKL+GQ HPTGLT NLLKLFEPRPPLEYKPP EKRK P TGMAQFVS FAEP
Sbjct: 25 RPNVQQLKLMGQIHPTGLTPNLLKLFEPRPPLEYKPPLEKRKLPAYTGMAQFVSHFAEPE 84
Query: 82 EPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAR 141
+PEY+PPVP ET AE++AR+ +LE+GAAK AEEL+KYDP +DPN +GDPYKTLFVAR
Sbjct: 85 DPEYAPPVPKCETRAEKKARIRNNKLEQGAAKVAEELQKYDPQSDPNATGDPYKTLFVAR 144
Query: 142 LSYETTESRIKREFESYGAIKRV 164
L+YET+E RIKREFE YG IKRV
Sbjct: 145 LNYETSEQRIKREFEGYGPIKRV 167
>UniRef100_P17133 U1 small nuclear ribonucleoprotein 70 kDa [Drosophila melanogaster]
Length = 448
Score = 219 bits (557), Expect = 8e-56
Identities = 120/262 (45%), Positives = 161/262 (60%), Gaps = 27/262 (10%)
Query: 39 LTANLLKLFEPRPPLEYKPP----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L NLL LF R P+ + PP P ++K G+A+F++ F +P + +P VET
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD---TPLPKTVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + + E+ A K E+ +DP N + DP++TLF+AR++Y+T+ES+++RE
Sbjct: 62 RQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ L+ D ES KP+GYAFIEY H RDM AAYK ADG+KI+ +RVLVDVER R
Sbjct: 122 FEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERH--------- 265
TV W PRRLGGGLG TR GG++VN +HSGRE + R R RE+R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSN 241
Query: 266 -----------ADRDREKSRER 276
A+R R +SRER
Sbjct: 242 GLDARPGRGFGAERRRSRSRER 263
>UniRef100_UPI000018106E UPI000018106E UniRef100 entry
Length = 381
Score = 213 bits (543), Expect = 3e-54
Identities = 106/181 (58%), Positives = 131/181 (71%), Gaps = 10/181 (5%)
Query: 106 RLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVR 165
++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++REFE YG IKR+
Sbjct: 4 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIH 63
Query: 166 LVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLG 225
+V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERGRTV WRPRRLG
Sbjct: 64 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLG 123
Query: 226 GGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREERHADRDREKSRE 275
GGLG TR GG +VN RHSGR+ ++ GPS + R RE R R+R+K RE
Sbjct: 124 GGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERE 183
Query: 276 R 276
R
Sbjct: 184 R 184
>UniRef100_Q62376 U1 small nuclear ribonucleoprotein 70 kDa [Mus musculus]
Length = 378
Score = 213 bits (543), Expect = 3e-54
Identities = 106/181 (58%), Positives = 131/181 (71%), Gaps = 10/181 (5%)
Query: 106 RLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVR 165
++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++REFE YG IKR+
Sbjct: 4 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIH 63
Query: 166 LVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLG 225
+V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERGRTV WRPRRLG
Sbjct: 64 MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLG 123
Query: 226 GGLGTTRVGGDEVNQRHSGRE-----QQQSGPS-----RSEEPRVREERHADRDREKSRE 275
GGLG TR GG +VN RHSGR+ ++ GPS + R RE R R+R+K RE
Sbjct: 124 GGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERE 183
Query: 276 R 276
R
Sbjct: 184 R 184
>UniRef100_Q09584 Rnp (Rrm rna binding domain) containing protein 7 [Caenorhabditis
elegans]
Length = 332
Score = 184 bits (468), Expect = 2e-45
Identities = 105/253 (41%), Positives = 152/253 (59%), Gaps = 22/253 (8%)
Query: 39 LTANLLKLFEPRPPLEYKPP------PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVV 92
L NLL LFE RPP++Y PP + K P+TG+AQ++ F +P + +PVV
Sbjct: 5 LPPNLLALFEARPPVQYLPPCQDLLVDKNAKRAPMTGVAQYIQLFEDPKDTPAK--IPVV 62
Query: 93 ETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIK 152
T AE + + + E A K + + ++P +P S DPY+TLFV R++YET+ES+++
Sbjct: 63 -TKAEAKEEKRRQKDELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKLR 121
Query: 153 REFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVER 212
REFE+YG IK++ +V D E+ KPRGYAFIEY +M AYK+ADG K++G+R++VD ER
Sbjct: 122 REFEAYGKIKKLTMVHD-EAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYER 180
Query: 213 GRTVPNWRPRRLGGGLGTTRVGGDE---VNQR---------HSGREQQQSGPSRSEEPRV 260
GRT W PRRLGGG G TR + + +R + R++++SG +
Sbjct: 181 GRTQKTWLPRRLGGGKGDTRKTREAKSVIEEREIASGFGGGYEDRDRERSGSRDRRQDSY 240
Query: 261 REERHADRDREKS 273
R DRDR +S
Sbjct: 241 RNGGGNDRDRRES 253
>UniRef100_Q7RTB4 U1 small nuclear ribonucleoprotein 70 kDa [Plasmodium yoelii
yoelii]
Length = 391
Score = 184 bits (466), Expect = 3e-45
Identities = 97/200 (48%), Positives = 136/200 (67%), Gaps = 6/200 (3%)
Query: 38 GLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAE 97
GL ++L LF+ RP L++ P +K+K TG+++F++ F E G+P PP +E+P E
Sbjct: 5 GLPPHILILFQSRPLLDFYKPIKKKKPKEYTGISEFLNYF-EDGKP---PPKIKLESPKE 60
Query: 98 RRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFES 157
R+ R K ++ E+ ++YDP + +IS DP KTLF+ RLSYE E ++K+EFE+
Sbjct: 61 RKERKKKEKIAYNELILKEKKKEYDPFKNNDISSDPKKTLFIGRLSYEVNEKKLKKEFET 120
Query: 158 YGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVP 217
YG IK V+++ D + KPRGYAFIE+ HT+ + AY ADG+KIE RR+LVD+ER RTV
Sbjct: 121 YGKIKYVKVIYD-QDKKPRGYAFIEFEHTKSVTDAYNLADGKKIENRRILVDMERARTVK 179
Query: 218 NWRPRRLGGGLGTTRVGGDE 237
NW PRRLGGG G +R G DE
Sbjct: 180 NWVPRRLGGGKGPSR-GSDE 198
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.313 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,753,308
Number of Sequences: 2790947
Number of extensions: 21085377
Number of successful extensions: 80735
Number of sequences better than 10.0: 3946
Number of HSP's better than 10.0 without gapping: 2587
Number of HSP's successfully gapped in prelim test: 1376
Number of HSP's that attempted gapping in prelim test: 73327
Number of HSP's gapped (non-prelim): 7415
length of query: 276
length of database: 848,049,833
effective HSP length: 125
effective length of query: 151
effective length of database: 499,181,458
effective search space: 75376400158
effective search space used: 75376400158
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC147964.4