BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147714.4 - phase: 0 /pseudo
         (1920 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]                 1070  0.0
UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]                  541  e-151
UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]                  535  e-150
UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic ...   510  e-142
UniRef100_Q93Y69 Putative gag-pol [Oryza sativa]                      446  e-123
UniRef100_Q40580 Integrase [Nicotiana tabacum]                        414  e-113
UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sa...   410  e-112
UniRef100_Q6L974 GAG-POL [Vitis vinifera]                             410  e-112
UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]                      382  e-104
UniRef100_Q65WT1 Putative polyprotein [Oryza sativa]                  381  e-103
UniRef100_Q9MFD2 Orf764 protein [Beta vulgaris subsp. vulgaris]       381  e-103
UniRef100_Q5U6F6 Orf764 protein [Beta vulgaris subsp. vulgaris]       381  e-103
UniRef100_Q65WT8 Putative polyprotein [Oryza sativa]                  380  e-103
UniRef100_Q7XL20 OSJNBa0079M09.11 protein [Oryza sativa]              380  e-103
UniRef100_Q60D74 Putative polyprotein [Oryza sativa]                  379  e-103
UniRef100_Q84T73 Putative polyprotein [Oryza sativa]                  379  e-103
UniRef100_Q6L5D6 Putative polyprotein [Oryza sativa]                  378  e-102
UniRef100_Q8S0W5 Putative polyprotein [Oryza sativa]                  377  e-102
UniRef100_Q84JT1 Putative polyprotein [Oryza sativa]                  372  e-101
UniRef100_Q5W669 Putatve polyprotein [Oryza sativa]                   372  e-101

>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
          Length = 2262

 Score = 1070 bits (2767), Expect = 0.0
 Identities = 491/718 (68%), Positives = 611/718 (84%), Gaps = 8/718 (1%)

Query: 1204 AIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVV 1263
            AIYYLSKK TDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK  +
Sbjct: 1551 AIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPAL 1610

Query: 1264 TGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKD 1323
            TG++ARWQ++L+EYDI + +QKAIKGSIL+D+ A QP++DYQP+  +FP+E+I+YLK KD
Sbjct: 1611 TGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKMKD 1670

Query: 1324 CEEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEY 1383
            C+EPL+ EGPDP+ KW L+FDGA N  G G+GAV+++P+G H+PF+A++ F+ TNN  EY
Sbjct: 1671 CKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEY 1730

Query: 1384 EACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVE 1443
            EACI GIEEAI +RIK LDI+GDSAL++NQ+ G+W T+   LIPYRDY RR+LT+F KV+
Sbjct: 1731 EACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVK 1790

Query: 1444 LHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVD 1503
            L+H+PRDENQMADALATLSSM +VN WN VP + V RLERP++VF    V+       +D
Sbjct: 1791 LYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESVV-------ID 1843

Query: 1504 NKPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLD-GDILYKRNYDMVLLRCVDEH 1562
             KPWYYDIK  L ++EYP GAS  DKKTLRRLA  F L+  D+LYKRN+DMVLLRC+D  
Sbjct: 1844 EKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRP 1903

Query: 1563 EAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHV 1622
            EA+ LM +VH+G+FGTHA GH M++KLLRAGYYW+TME DC+++ARKCHKCQIYAD++HV
Sbjct: 1904 EADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHV 1963

Query: 1623 PPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVV 1682
            PP  LNV++SPWPF+M GIDMIG+IEP ASNGHRFILVAIDYFTKWVEAASY N+TKQVV
Sbjct: 1964 PPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAASYANITKQVV 2023

Query: 1683 AKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAAN 1742
             +FIK  IICRYGVP +IITDNG+NLNN +++ LC++FKIEHHNSSPYRP++NG VEAAN
Sbjct: 2024 TRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNGAVEAAN 2083

Query: 1743 KNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 1802
            KNIK+IV+KMV TY+DWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAVLP+EVEIPSL
Sbjct: 2084 KNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSL 2143

Query: 1803 RVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGEL 1862
            RV+++ KL EAEW ++R+++L+L+EE+R+  +  GQ YQ RMK AFD+KV PR ++ G+L
Sbjct: 2144 RVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDL 2203

Query: 1863 VLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
            VLKR +    D RGKWTPNYEG YVVKK FSGGAL+LT MDG + P+PVN+D+VKKYF
Sbjct: 2204 VLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYF 2261



 Score =  544 bits (1401), Expect = e-152
 Identities = 387/1135 (34%), Positives = 569/1135 (50%), Gaps = 124/1135 (10%)

Query: 3    QLRTELATLREELAKANDVMTALLAAQEQSATAIPIATAIPVTTSMLPTASADARFAMPA 62
            Q++TELA +R  +A+   +M  +   QE+    +    A+    +               
Sbjct: 3    QVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPPPNQ-------------- 48

Query: 63   GFPYGLPPFFTPSTAAGTSGTANNVLIPATNAV-------SINATLPQTTAAVTEPLVHA 115
              P G P   TP+ A   +  A    +             + NA +    A    P+V  
Sbjct: 49   ALPEGNPVHDTPAAAIPVNNYAVGEELMGIRVDGQPIAPDAANARVIHAPARNRIPIVDR 108

Query: 116  IPQGVNINTQHGSIPVTK-TMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVDVP 174
                  + ++   IP      +  ++ LA+++R        N+  F   ++ LV  + +P
Sbjct: 109  QEDLFTMFSEDEDIPGRNDARDRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRIP 165

Query: 175  KKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKN 234
             KFK P FD+YNG +CP+ H+  Y RK+  Y D++ + ++ FQDSL   + +WY  L  +
Sbjct: 166  YKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSD 225

Query: 235  DIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDE 294
             I  + +L  AF   Y  N  + P+R  L+SL QK  ESF+EYAQRWR  AAR+ P + E
Sbjct: 226  SIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLE 285

Query: 295  EEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKR 354
             E+T  F+ TL+  +++RM      +FS++V  G R E  ++ G I     +   ++SK+
Sbjct: 286  RELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKK 341

Query: 355  YGNGHHKKKETEVGMVSAGAGQSMATVAPINATQMPPSYPYQKQQLPVQQQQQNQQARP- 413
               G  +++E E   V     Q+        A  +P   P Q+QQ  VQQ QQ QQ RP 
Sbjct: 342  PFAGAPRRREGETNAVQHRRDQNRIEYRQAAAVTIPAPQPRQQQQQRVQQPQQQQQQRPY 401

Query: 414  ---------TFPPIPMLYAELLPTLLHRGH---CTTRQGKPPPDPLPPRFRSDLKCDFHQ 461
                      F  +PM YAELLP LL  G    CT      PP  LPP + ++++CDFH 
Sbjct: 402  QPRQRMPDRRFDSLPMSYAELLPELLRLGLVELCTMA----PPTVLPPGYDANVRCDFHS 457

Query: 462  GALGHDVEGCYALKYIVKKLIDQGKLTFKNNVPHVLDNPLPNHAA--VNMIEVCEEAPRL 519
            GA GH  E C AL++ V+ LID   + F   VP+V++NP+P H    VN IE  E    +
Sbjct: 458  GAPGHHTEKCRALQHKVQDLIDANAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLV 516

Query: 520  D-VRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCYTVQDDIQSLMNDNFLTVS- 577
            D V +V T L+ +  +L    ++S     CLGC  +  GC  ++  IQ +M++  L  S 
Sbjct: 517  DNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQFSR 576

Query: 578  ------DVCVIVPVF-----HDPPVKSMPLKENAEPLVIRLPGPV--PYT---------- 614
                   V  I   F     H   V S P   N  P+ I +P  +  P T          
Sbjct: 577  AVKDRGTVSTITIYFKPSEGHGQRVVSAPAT-NGTPVTIPVPVTISAPTTIVASGRRAVE 635

Query: 615  SDRAIPYKY-----------------NATIIENGV--EVPLVSLAVVNNTAEGTSAALRS 655
            + RA+P+KY                 N T +  G+   VP      V+N   G     RS
Sbjct: 636  NSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRVPATVGPAVDNVG-GPGGFTRS 694

Query: 656  GRV-RPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEILRLIKRSDY 714
            GR+  P   +   A        K    +  PV ++A  P  S E  +++E +++IK+SDY
Sbjct: 695  GRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--PEGSFE-KDVEEFMKMIKKSDY 751

Query: 715  KIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTLDHFGSIVGNITACSNL 774
            KIVDQL QTPSKISILSLLL S AHR+ LLK+L  AYV  E++++    ++ N++    +
Sbjct: 752  KIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGV 811

Query: 775  WFSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRR 834
             F+  +LP  G++HN ALHI++ C   ++S+VLVDTGSSLNV+PK  L ++   G  L  
Sbjct: 812  GFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTP 871

Query: 835  STFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*IHDAGAVTS 894
            S  +V+AFD +++SV GE+ LP+ IGPE F I F VMDI  +Y+CLLGRP IH AGAV+S
Sbjct: 872  SDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSS 931

Query: 895  TLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTIEG---TE 947
            TLHQKLK+  +G++VT+ GEE  LVS LSSF  +E  G    T    F+ + +E     E
Sbjct: 932  TLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQVFETVALEKVAYAE 991

Query: 948  PKRDGTAMASLKDAQRAVQEGQAAG*GRLIQLRENKHKEGLGFSPTSGVSTG-----AFY 1002
             ++ G ++ S K A+  V  G+A G G+++ L   + K G+G+ P      G      F 
Sbjct: 992  QRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLQAEQNGQAGPSTFT 1051

Query: 1003 SAGFVNAITEEATGFGP-----------RPVFVIPGGIARDWDAIDIPSIMHVSE 1046
            SAG +N     ATG              RP    PGG   +W A ++  +  ++E
Sbjct: 1052 SAGLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWTAEEVVQVTLLTE 1104



 Score = 60.1 bits (144), Expect = 7e-07
 Identities = 27/51 (52%), Positives = 39/51 (75%), Gaps = 2/51 (3%)

Query: 1156 NFEFPVYEAEDEEGDD--IPYEITRLLEQEGRAIQPHQEEIEIINLGIPTA 1204
            +F+ P+Y+AE+E  +D  +P E+ RLL+QE R IQPHQEE+E++NLG   A
Sbjct: 1121 DFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDA 1171


>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
          Length = 1814

 Score =  541 bits (1393), Expect = e-151
 Identities = 357/972 (36%), Positives = 521/972 (52%), Gaps = 94/972 (9%)

Query: 156  NADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHC 215
            N+  F   ++ LV  + +P KFK P FD+YNG +CP+ H+  Y RK+  Y D++ + ++ 
Sbjct: 148  NSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYF 207

Query: 216  FQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFR 275
            FQDSL   + +WY  L ++ I  + +L  AF   Y  N  + P+R  L+SL QK  ESF+
Sbjct: 208  FQDSLSGASLDWYMELKRDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFK 267

Query: 276  EYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAV 335
            EYAQRWR  AAR+ P + E E+T  F+ TL+  +++RM      +FS++V  G R E  +
Sbjct: 268  EYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFVSFSDVVICGERTESLI 327

Query: 336  REGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINATQMPPSYPY 395
            + G I     ++  ++SK+   G  +++E E   V     Q+ +    + A  +P   P 
Sbjct: 328  KTGKI----QDAGSSSSKKPFAGAPRRREGETNAVQYRRDQNRSQRCQVAAVTIPAPQPR 383

Query: 396  QKQQLPVQQ-QQQNQQARP----------TFPPIPMLYAELLPTLLHRGHCTTRQGKPPP 444
            Q+QQ  VQQ QQQ QQ RP           F  +PM YAELLP LL  G    R    PP
Sbjct: 384  QQQQQRVQQPQQQQQQQRPYQPRQRMPDRRFDSLPMSYAELLPELLRLGMVELRT-MAPP 442

Query: 445  DPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFKNNVPHVLDNPLPNH 504
              LPP + ++++CDFH GA GH  E C AL++ V+ LID   + F   VP+V++NP+P H
Sbjct: 443  TVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQH 501

Query: 505  AA--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCYTV 561
                VN IE  E E   ++V +V T L+ +  +L    ++S     CLGC  +  GC  +
Sbjct: 502  GGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQL 561

Query: 562  QDDIQSLMNDNFL----------TVSDVCVI-------------VPVFHDPPVK-SMPLK 597
            +  IQ +M++  L          TVS + +               P  +  PV  S+P+ 
Sbjct: 562  RTGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTPVTISVPVT 621

Query: 598  ENAEPLVIRLPGPVPYTSDRAIPYKYNATIIEN-----------------GV--EVPLVS 638
             +A P  I   G     + RA+P+KY+     N                 G+   VP   
Sbjct: 622  ISA-PTTIAASGRRAVENSRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATV 680

Query: 639  LAVVNNTAEGTSAALRSGRV-RPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQPGRSI 697
               V+N   G     RSGR+  P   +   A        K    +  PV ++A  P  S 
Sbjct: 681  GPAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--PEGSF 737

Query: 698  EDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVT 757
            E  +++E +++IK+SDYKIVDQL QTPSKISILSLLL S AHR+ LLK+L  AYV  E++
Sbjct: 738  E-KDVEEFMKIIKKSDYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEIS 796

Query: 758  LDHFGSIVGNITACSNLWFSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVM 817
            ++    ++ N++    + F+  +L   G++HN ALHI++ C   ++S+VLVDTGSSLNV+
Sbjct: 797  VNQLEGVMANVSTRHGVGFTNLDLTPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVL 856

Query: 818  PKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASY 877
            PK  L ++   G  L  S  +V+AFDG+++SV GE+ LP+ IGPE F I F VMDI  +Y
Sbjct: 857  PKQILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAY 916

Query: 878  NCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT 936
            +CLLGRP IH AGAV+STLHQKLK+  +G++VT+ GEE  LVS LSSF  +E  G    T
Sbjct: 917  SCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHET 976

Query: 937  ---AFQGLTIEG---TEPKRDGTAMASLKDAQRAVQEGQAAG*GRLIQLRENKHKEGLGF 990
               AF+ + +E     E ++ G ++ S K A+  V  G+A G G+++ L   + K G+G+
Sbjct: 977  LCQAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGY 1036

Query: 991  SPTSGVSTG-----AFYSAGFVNAITEEATGFGP-----------RPVFVIPGGIARDWD 1034
             P      G      F SAG +N     ATG              RP    PGG   +W 
Sbjct: 1037 EPLQAEQNGQAGPSTFTSAGLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWT 1094

Query: 1035 AIDIPSIMHVSE 1046
            A ++  +  ++E
Sbjct: 1095 AEEVVQVTLLTE 1106



 Score =  400 bits (1029), Expect = e-109
 Identities = 180/261 (68%), Positives = 226/261 (85%)

Query: 1204 AIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVV 1263
            AIYYLSKK TDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK  +
Sbjct: 1553 AIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPAL 1612

Query: 1264 TGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKD 1323
            TG++ARWQ++L+EYDI + +QKAIKGSIL+D+ A QP++DYQP+  +FP+E+I+YLK KD
Sbjct: 1613 TGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKVKD 1672

Query: 1324 CEEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEY 1383
            CEEPL+ EGPDP+ KW L+FDGA N  G G+GAV+++P+G HIPF+A++ F+ TNN  EY
Sbjct: 1673 CEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHIPFSARLTFDVTNNEAEY 1732

Query: 1384 EACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVE 1443
            EACI GIEEAI +RIK LDIYGDSAL++NQ+ G+W T+   LIPYRDY RR+LT+F KV 
Sbjct: 1733 EACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVR 1792

Query: 1444 LHHIPRDENQMADALATLSSM 1464
            L+H+PRDENQMADALATLSSM
Sbjct: 1793 LYHVPRDENQMADALATLSSM 1813



 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 27/51 (52%), Positives = 37/51 (71%), Gaps = 2/51 (3%)

Query: 1156 NFEFPVYEAEDEEGDD--IPYEITRLLEQEGRAIQPHQEEIEIINLGIPTA 1204
            +F  P+Y+AE+E  +D  +P E+ RLL QE R IQPHQEE+E++NLG   A
Sbjct: 1123 DFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTEDA 1173


>UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]
          Length = 1105

 Score =  535 bits (1379), Expect = e-150
 Identities = 355/992 (35%), Positives = 523/992 (51%), Gaps = 102/992 (10%)

Query: 116  IPQGVNINT----QHGSIPVTKTMEEMMEELAKE----------------LRHEIKANR- 154
            +P   N  T        +P+    E+M   L+++                L  +I+A   
Sbjct: 87   VPDAANARTIRAPARNPVPIVDRQEDMFTLLSEDEDVLGRVDERDRKVDALAEKIRAMEC 146

Query: 155  GNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIH 214
             N+ SF   ++ LV  + +P KFK P FD+YN  +CP+ H+  Y RK+  Y D++ + ++
Sbjct: 147  QNSLSFDVTNMGLVEGLRIPYKFKAPSFDKYNDTSCPRTHVQAYYRKISAYTDDEKMWMY 206

Query: 215  CFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESF 274
             FQDSL   + +WY  L ++ I  + +L  AF   Y  N  + P+R  L+SL QK  ESF
Sbjct: 207  FFQDSLSGASLDWYMELKRDSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESF 266

Query: 275  REYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEA 334
            +EYAQRWR  AAR+ P + E E+T  F+ TL+  +++RM      +FS++V  G R E  
Sbjct: 267  KEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGSCPFGSFSDVVICGERTESL 326

Query: 335  VREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINATQMPPSYP 394
            ++ G I     +   ++SK+   G  +++E E  +V     Q+        A  +P   P
Sbjct: 327  IKTGKI----QDVGSSSSKKPFAGAPRRREGETNVVQHRRDQNRIEYRQAAAVTIPAPQP 382

Query: 395  YQKQQLPVQQ-QQQNQQARP----------TFPPIPMLYAELLPTLLHRGHCTTRQGKPP 443
             Q+QQ  VQQ QQQ QQ RP           F  +PM YAELLP LL  G    R    P
Sbjct: 383  RQQQQQRVQQPQQQQQQQRPYQPRQRMPDRRFDSLPMSYAELLPELLRLGMVELRT-MAP 441

Query: 444  PDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFKNNVPHVLDNPLPN 503
            P  LPP + ++++CDFH GA GH  E C AL++ V+ LID   + F   VP+V++NP+P 
Sbjct: 442  PTVLPPGYDANVRCDFHSGAPGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQ 500

Query: 504  HAA--VNMIEVCE-EAPRLDVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCYT 560
            H    VN IE  E E   ++V +V T L+ +  +L    ++S     CLGC  +  GC  
Sbjct: 501  HGGHRVNNIEGKEAEDLVVNVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQ 560

Query: 561  VQDDIQSLMNDNFL----------TVSDVCVI-------------VPVFHDPPVK-SMPL 596
            ++  IQ +M++  L          TVS + +               P  +D PV  S+P+
Sbjct: 561  LRAGIQGMMDEGCLQFSRAVKDRGTVSTITIYFKPTEGRGQRVVSAPATNDTPVTISVPV 620

Query: 597  KENAEPLVIRLPGPVPYTSDRAIPYKYNATIIEN-----------------GV--EVPLV 637
              +A P  I   G     + R +P+KY+     N                 G+   VP  
Sbjct: 621  TISA-PTTIVASGRRAVENSRVVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPAT 679

Query: 638  SLAVVNNTAEGTSAALRSGRV-RPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQPGRS 696
                V+N   G     RSGR+  P   +   A        K    +  PV ++A +    
Sbjct: 680  VGPAVDNVG-GPGGFTRSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEAPE---G 735

Query: 697  IEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEV 756
              + +++E +++IK+SDYKIVDQL QTPSKISILSLL+ S AHR+ LLK+L  AYV  E+
Sbjct: 736  TFEKDVEEFMKIIKKSDYKIVDQLNQTPSKISILSLLMCSEAHRNALLKMLNLAYVPQEI 795

Query: 757  TLDHFGSIVGNITACSNLWFSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNV 816
            +++    ++ N++    + F+  +LP  G++HN ALHI++ C   ++S+VLVDTGSSLNV
Sbjct: 796  SVNQLEGVMANVSTRHGVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNV 855

Query: 817  MPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINAS 876
            +P   L ++   G  L  S  +V+AFDG+++SV GE+ LP+ IGPE F I F VMDI  +
Sbjct: 856  LPNQILKKIDVEGFVLTPSDLIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPA 915

Query: 877  YNCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEG 935
            Y+CLLGRP IH AGAV+STLHQKLK+  +G++VT+ GEE  LVS LSSF  +E  G    
Sbjct: 916  YSCLLGRPWIHAAGAVSSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHE 975

Query: 936  T---AFQGLTIEG---TEPKRDGTAMASLKDAQRAVQEGQAAG*GRLIQLRENKHKEGLG 989
            T   AF+ + +E     E ++ G ++ S K A+  V  G+A G G+++ L   + K G+G
Sbjct: 976  TLCQAFETVALEKVAYAEQRKPGASITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVG 1035

Query: 990  FSPTSGVSTG-----AFYSAGFVNAITEEATG 1016
            + P      G      F SAG +N     ATG
Sbjct: 1036 YEPLRAEQNGQAGPSTFTSAGLMNHGDVSATG 1067


>UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0433F09 [Oryza sativa]
          Length = 2876

 Score =  510 bits (1314), Expect = e-142
 Identities = 290/751 (38%), Positives = 424/751 (55%), Gaps = 36/751 (4%)

Query: 1184 GRAIQPHQEEIEIINLGIPTAIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNH 1243
            G  +  H +E      G   A YYLS+ +   E  Y+ +EK C AL +A K+LRHY++ H
Sbjct: 2147 GALLAQHNDE------GKEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAH 2200

Query: 1244 TTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDD 1303
               LI+R DPI+Y+  + V+TG++ +W +L+ EYDI F  QKAIKG  LA+  A  P+ D
Sbjct: 2201 QIQLIARADPIRYVLSQPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPD 2260

Query: 1304 YQPIESDFPNEEIVYLKSKDCEEPLIGEGPDPNSKWGLVFDGAA----NAYGK-----GI 1354
              P+ ++ P+EEI   + ++              +W L FDGA+    N  G      G 
Sbjct: 2261 DSPLIANLPDEEIFTAELQE--------------QWELYFDGASRKDINPDGTPRRRAGA 2306

Query: 1355 GAVIVSPQGHHIPFTAQILFE-CTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQ 1413
            G V  +PQG  I  +  +L E C+NN  EYEA IFG+  A+ M ++ L  +GDS LII Q
Sbjct: 2307 GLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQ 2366

Query: 1414 IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV 1473
            I   +E    +L+PY   ARRL+  F  +E+ H+PR +N  ADALA L++       N  
Sbjct: 2367 INNIYEVRKPELVPYYTVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPA 2426

Query: 1474 PIIKVQRLERPSHVFTIGDVIDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLR 1533
             I+  +R   P+ +  I + ++    N  + + W             P      +++ L+
Sbjct: 2427 QIVVEERWLLPAVLELIPEEVNIIITNSAEEEDWRQPFLDYFKHGSLPEDPV--ERRQLQ 2484

Query: 1534 RLASRFLLDGDILYKRNYDM-VLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRA 1592
            R    ++    +LYKR+Y   VLLRCVD  EA +++ +VH G  G H +G  M   +   
Sbjct: 2485 RRLPSYIYKAGVLYKRSYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLV 2544

Query: 1593 GYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKAS 1652
            GYYW  +  DC + A+ CH CQI+ +  H PP  L+     WPF   GID+IG I P +S
Sbjct: 2545 GYYWPGIMADCLKTAKTCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSS 2604

Query: 1653 NGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNV 1712
             GHRFIL A DYF+KW EA     V    V  F++ +II R+GVP +I +DN     +  
Sbjct: 2605 RGHRFILTATDYFSKWAEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQK 2664

Query: 1713 VQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHGYR 1771
            +    E++KI+ + S+ Y PQ NG+ EA NK + +I++K V  + RDWH+ L  AL  YR
Sbjct: 2665 IYRFMEKYKIKWNYSTGYYPQANGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYR 2724

Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
             TVR+ T ATP+SLVYG EAVLPLE+++PSLRV +  +L++ E  + R+ +L+ VEE+R+
Sbjct: 2725 VTVRTPTQATPYSLVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERL 2784

Query: 1832 DAMARGQSYQARMKTAFDKKVHPREFKEGE--LVLKRRISQQPDPRGKWTPNYEGSYVVK 1889
             A+   + Y+  M  A+DK V  R F++GE  LVL+R I      +GK+ P +EG YV++
Sbjct: 2785 GALQNLELYRQNMVRAYDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIE 2844

Query: 1890 KAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
            +A+ GGA  L    G +   P+N   +KKYF
Sbjct: 2845 QAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875



 Score =  104 bits (260), Expect = 2e-20
 Identities = 79/288 (27%), Positives = 130/288 (44%), Gaps = 21/288 (7%)

Query: 647  EGTSAALRSGRVRPPLFQKKAATPTVPPIDKPTPTDVSPVNRDASQPGRSIEDSNLDEIL 706
            E  + +LR G+  P   + K     VP +DKP         + AS PG + E        
Sbjct: 1252 EEVNISLRGGKTLPDPHKSK-----VPNVDKPA--------KKASPPGEAPEAPETKTGS 1298

Query: 707  RLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTLDHFGSIVG 766
            +     DYK++  L + P+ +S+   L+     R+ L+K L+   V       H   +  
Sbjct: 1299 KEKPAVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEVYEVDMAKH--RLYD 1356

Query: 767  NITACSNLWFSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLS 826
            N    + + F++ +    G  HN  L+I  N     +  +L+D GS++N++P  +L +  
Sbjct: 1357 NPLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAG 1416

Query: 827  YRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*I 886
            +    L     ++  FD   K  LG I + I +   +F + F V++ N SY+ LLGRP I
Sbjct: 1417 FTTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWI 1476

Query: 887  HDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAE 934
            H    V STLHQ LKF         +G +  + S  S ++  E+  A+
Sbjct: 1477 HKYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYTIQESYHAD 1518


>UniRef100_Q93Y69 Putative gag-pol [Oryza sativa]
          Length = 1262

 Score =  446 bits (1147), Expect = e-123
 Identities = 248/683 (36%), Positives = 381/683 (55%), Gaps = 36/683 (5%)

Query: 1184 GRAIQPHQEEIEIINLGIPTAIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNH 1243
            G  +  H +E      G   A YYLS+ +   E  Y+ +EK C AL +A K+LRHY++ H
Sbjct: 601  GALLAQHNDE------GKEVACYYLSRTMVGAERNYSPIEKLCLALIFALKKLRHYMLTH 654

Query: 1244 TTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDD 1303
               LI+ +DPI+Y+  + ++ G++ +W +L+ E+DI +  QKA+KG  LA+  A  P+ D
Sbjct: 655  QIQLIATVDPIRYVLSQPLLAGRLGKWALLMMEFDITYVPQKAVKGQALAEFLAAHPVPD 714

Query: 1304 YQPIESDFPNEEIVYLKSKDCEEPLIGEGPDPNSKWGLVFDGAANAYGK---------GI 1354
              P+ ++ P+E++  +++    EP           W L FDGA+              G 
Sbjct: 715  DSPLITELPDEDVFTIET----EP----------SWELCFDGASRTENDRDGTPRKRAGA 760

Query: 1355 GAVIVSPQGHHIPFTAQILFE-CTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQ 1413
            G V  +PQG  I  +  +L E C+NN  EYEA IFG+  A+ M ++ + +YGDS LI+ Q
Sbjct: 761  GLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSIRVYGDSQLIVQQ 820

Query: 1414 IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV 1473
            I   +E    +L+PY   ARRL+  F  +E+ H+PR  N  ADALA L++   +      
Sbjct: 821  INDIYEVLKQELVPYYSAARRLMEMFGHIEVMHVPRSRNAPADALAKLAAALVLPQGGPT 880

Query: 1474 PIIKVQRLERPSHVFTIGDV--IDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKT 1531
             +   +R   P+ +  + +   +D           W             P   ++ +++ 
Sbjct: 881  QVNVEERWLLPAVLELLPNEYEVDTVMAAAAKEDDWRVPFLNYFRHGSLPD--NSVERRQ 938

Query: 1532 LRRLASRFLLDGDILYKRNYDM-VLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLL 1590
            L+R    ++    + Y+R+Y   VLLRCVD  EA++ + +VH G  G H +G  M   + 
Sbjct: 939  LQRRLPSYVYKSGVSYRRSYGQEVLLRCVDRLEADKALQEVHHGVCGGHQSGPKMYHSIR 998

Query: 1591 RAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPK 1650
             AGYYW  +  DC + A+ CH CQI+ D  H+PP  L+     WPF   GID+IG I+P 
Sbjct: 999  LAGYYWPEIMADCLKVAKSCHGCQIHGDFKHLPPVPLHPTVPAWPFEAWGIDVIGPIDPP 1058

Query: 1651 ASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 1710
            +S GHRFI    DYF+KW EA S   V    V  F++ +II R+GVP +I +DNG    +
Sbjct: 1059 SSRGHRFIFAITDYFSKWAEAVSLREVKTDNVISFLERHIIYRFGVPHRISSDNGKAFKS 1118

Query: 1711 NVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHG 1769
            + +Q    ++KI  + S+ Y PQ NG++EA NK + +I++K+V  + RDWH+ L  AL  
Sbjct: 1119 HKMQRFIAKYKIRWNYSTGYYPQANGMIEAFNKTLGKILKKVVNRHRRDWHDHLFEALWA 1178

Query: 1770 YRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEK 1829
            YR TVR+ T  TP+SLVYG EAVLPLEVE+PSLRV +  ++++ E  + R+ +L+ +EE 
Sbjct: 1179 YRVTVRTPTQCTPYSLVYGSEAVLPLEVEVPSLRVAIHEEITQDEQVRLRFQELDTLEEG 1238

Query: 1830 RMDAMARGQSYQARMKTAFDKKV 1852
            R+ A+   + Y+  M  A++K V
Sbjct: 1239 RLQAVQNLELYRQNMVRAYNKLV 1261


>UniRef100_Q40580 Integrase [Nicotiana tabacum]
          Length = 382

 Score =  414 bits (1065), Expect = e-113
 Identities = 192/342 (56%), Positives = 263/342 (76%), Gaps = 2/342 (0%)

Query: 1579 HATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSM 1638
            H  G  +S+K+LRAGY+W+TME DC ++ +KCH+CQIYAD + VPP+ LN  S+PWPF+ 
Sbjct: 26   HMNGFVLSKKILRAGYFWMTMETDCIRYVQKCHQCQIYADMMRVPPNKLNATSAPWPFAA 85

Query: 1639 VGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPS 1698
             G+D+IG IEP ASN H+FILVAIDYFTKWVEAASY  VTK+VV  F+++ I+CR+ VP 
Sbjct: 86   WGMDIIGPIEPTASNWHKFILVAIDYFTKWVEAASYKVVTKKVVTDFVRDCIVCRFEVPE 145

Query: 1699 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYRD 1758
             IITDN  NL++ +++A+C+ FKI+H NS+ Y PQ+NGVVEAANKNIK+I++KMV  +++
Sbjct: 146  SIITDNAANLHSALMKAMCDTFKIKHKNSTAYMPQMNGVVEAANKNIKKILRKMVDNHKE 205

Query: 1759 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 1818
            WHE LP+AL GY T V +S GATP+ LVY  EAV+ +EVEI SLR+I E  LS+AEW +S
Sbjct: 206  WHEKLPFALLGYCTIVCTSIGATPYLLVYSTEAVIHVEVEITSLRIIQEDVLSDAEWIRS 265

Query: 1819 RYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKW 1878
            RY+QL+L++ KR+  +  GQ Y  RM  AF+K+V PR+F  G+LVLKR    Q + +GK+
Sbjct: 266  RYEQLSLIDGKRV--VCHGQLYHNRMSRAFNKRVKPRQFASGQLVLKRIFPHQDEAKGKF 323

Query: 1879 TPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
            +PN++G Y+V +  +GG LIL  +DG   P P+N+D+VK+Y+
Sbjct: 324  SPNWQGPYMVHRVLTGGTLILAEIDGEVWPKPINSDVVKRYY 365


>UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1580

 Score =  410 bits (1054), Expect = e-112
 Identities = 243/719 (33%), Positives = 378/719 (51%), Gaps = 59/719 (8%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            ++YLS++L + ETRY+ +EK C  L ++  RLRHYL+++   +I + D +KY+    ++ 
Sbjct: 911  VFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRHYLLSNECTVICKADVVKYMLSAPILK 970

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G+I +W   L+E+D+ +++ KAIKG  +A+      + DY+  +    + E+V       
Sbjct: 971  GRIGKWIFSLTEFDLRYESPKAIKGQAIANF-----IVDYR--DDSIGSVEVV------- 1016

Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
                          W L FDG+   +G GIG VI+SP+G    F   I    TNN  EYE
Sbjct: 1017 -------------PWTLFFDGSVCTHGCGIGLVIISPRGACFEFAYTIKPYATNNQAEYE 1063

Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
            A + G++    +    ++I GDS L+I+Q+ GE+E  +  LI Y +  + L+  F  V L
Sbjct: 1064 AVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEYECKNDTLIVYNEKCQELMREFRLVTL 1123

Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDN 1504
             H+ R++N  A+ LA  +S ++         + ++ ++    V T  D            
Sbjct: 1124 KHVSREQNIEANDLAQGASGYK---------LMIKHVQIEVAVITADD------------ 1162

Query: 1505 KPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEA 1564
              W Y + Q      Y    S    + LR  A +++L  D LY R  D VLL+C+   +A
Sbjct: 1163 --WRYYVYQ------YLQDPSQSASRKLRYKALKYILLDDELYYRTIDGVLLKCLSTDQA 1214

Query: 1565 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPP 1624
            +  + +VH+G  GTH + H M   L  AGY+W TM  DC+++ + C  CQ +      P 
Sbjct: 1215 KVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPTMLEDCFRYYKGCQDCQKFGAIQRAPA 1274

Query: 1625 HALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 1684
             A+N I  PWPF   GIDMIG I P +S GH+FILVA DYFTKWVEA     V      +
Sbjct: 1275 SAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQ 1334

Query: 1685 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKN 1744
            F++ +II R G+P  I TD G+   ++      +   I+  NSSPY  Q NG  EA+NK+
Sbjct: 1335 FVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFADSMGIKLLNSSPYYAQANGQAEASNKS 1394

Query: 1745 IKRIVQKMVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 1803
            + +++++ ++ Y R WH  L  AL  YR     S    P+ LVY  +A+LP EV I S R
Sbjct: 1395 LIKLIKRKISDYPRQWHTRLAEALWSYRMACHGSIQVPPYKLVYRHKAILPWEVRIGSRR 1454

Query: 1804 VIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELV 1863
              ++  L+  E+     D+   + + R+ A+A+    + R+   ++KKV P++F EGEL+
Sbjct: 1455 TELQNDLTADEYSNLMADEREDLVQSRLRALAKVIKDKERVTRHYNKKVVPKDFSEGELI 1514

Query: 1864 LK--RRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
             K    I  +    GKW+PN+EG + + K  S GA +L  +DG      +N   +KKY+
Sbjct: 1515 WKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKGAYMLQGLDGEVYDRALNGKYLKKYY 1573



 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 780 ELPEAGKHHNLA-LHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 838
           E PE  ++ +L  L+I+       +S ++VD G+++N+MP +T  +L      L ++  +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410

Query: 839 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*IHDAGAVTSTLHQ 898
           +K F G     +G +++ +T+G +T   TF V+D   SY+ LLGR  IH    + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470

Query: 899 KLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGTEPKRDGTAMASL 958
            L     G  + I   ++ L  +  S+ C E        +   T++  + K+ G  + S 
Sbjct: 471 CL-IQWQGDKIEIVPADSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQ-GQGLMSA 527

Query: 959 KDAQRAVQEGQAAG*GR--LIQL 979
            D +  +    A G GR  LI+L
Sbjct: 528 DDLEE-IDISPAIGQGRHLLIEL 549


>UniRef100_Q6L974 GAG-POL [Vitis vinifera]
          Length = 1027

 Score =  410 bits (1053), Expect = e-112
 Identities = 243/718 (33%), Positives = 377/718 (51%), Gaps = 38/718 (5%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            IYY+S+ L D ETRY+ +E    AL  AA++LR Y   H   +++   P++ I  K  +T
Sbjct: 345  IYYVSRALADVETRYSKMELISLALRSAAQKLRPYFQAHPVIVLTDQ-PLRNILHKPDLT 403

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ +W + LSE+ I F+ + ++KG ++AD        +Y                    
Sbjct: 404  GRMLQWAIELSEFGIEFQPRLSMKGQVMADFVL-----EYS------------------- 439

Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
             +P   EG      W L  DGA+ + G G+G ++ SP G H+    ++ F  +NN  EYE
Sbjct: 440  RKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYE 499

Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
            A + G++ A+ + +  L I+ DS L++  ++ E+E   A++  Y    R  L  FT+  +
Sbjct: 500  AILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTI 559

Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDN 1504
              I R +N+ ADALA +++   +     +PI  VQ     S +     +         D+
Sbjct: 560  EKIKRADNRRADALAGIAASLSIKEAILLPI-HVQTNPSVSEI----SICSTTEAPQADD 614

Query: 1505 KPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEA 1564
            + W  DI + + +   P     K    +R  A+RF L G  LYKR++    LRC+   EA
Sbjct: 615  QEWMNDITEYIRTGTLP--GDPKQAHKVRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEA 672

Query: 1565 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPP 1624
            + ++ ++H+G +G H+ G +++ +    GYYW TM+ +   + ++C KCQ YA   H+P 
Sbjct: 673  QYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPS 732

Query: 1625 HALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 1684
              L  IS PWPF+  G+D++ R  P A    +F+LVA DYF+KWVEA +Y +   + V K
Sbjct: 733  TTLKSISGPWPFAQWGMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTK 791

Query: 1685 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKN 1744
            F+  NIICR+G+P  II DNG   ++   +  C E  I +  S+P  PQ NG  EA NK 
Sbjct: 792  FVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKT 851

Query: 1745 IKRIVQKMVTTYR-DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 1803
            +   ++K +   +  W E LP  L  YRTT    TG TPF+L YGM+AV+P+E+ +P++ 
Sbjct: 852  LITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIW 911

Query: 1804 VIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFKEGELV 1863
                AK S+A     R   L+  +E R  A  R   YQ R    +++KV PR  K G LV
Sbjct: 912  T-NAAKQSDANMQLGR--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLV 968

Query: 1864 LKRRISQQPD-PRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
            L++      +   GK+  N+EG Y+V KA   GA  L  +DG  L  P N   +K+Y+
Sbjct: 969  LRKFFENTTEVGAGKFQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026


>UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  382 bits (980), Expect = e-104
 Identities = 250/727 (34%), Positives = 369/727 (50%), Gaps = 47/727 (6%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            I+Y SK L + ETRY ++EK   A+  +A++LR Y  +HT  +++   P++        +
Sbjct: 1147 IFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQS 1205

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ +W V LSEYDI F+ + A+K  +LAD     PL   +   S    EE         
Sbjct: 1206 GRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE--------- 1256

Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
                          W L  DG+++A G GIG  +VSP    +  + ++ F  TNN+ EYE
Sbjct: 1257 --------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYE 1302

Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
              I G+  A GM+I  +  + DS LI  Q+ GE+E  + K+  Y    + +   F   +L
Sbjct: 1303 VLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKL 1362

Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVP-IIKVQRLERPS-----HVFTIGDVIDQAG 1498
              IPR +N  ADALA L+    +   +D+  II V+ +++PS      V  +  +     
Sbjct: 1363 SKIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNA 1418

Query: 1499 ENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRRL---ASRFLLDGDILYKRNYDMVL 1555
             +  D   W  +I+  L     P      DK T RRL   A+++ L  + L K +    +
Sbjct: 1419 PDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAM 1473

Query: 1556 LRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQI 1615
            L C+   E  ++M + H+G  G H+ G  ++ KL + G+YW TM  DC     KC +CQ 
Sbjct: 1474 LNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQR 1533

Query: 1616 YADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT 1675
            +A  IH P   L    +P+PF    +D++G +   AS   RFILV  DYFTKWVEA SY 
Sbjct: 1534 HAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTKWVEAESYA 1591

Query: 1676 NVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQIN 1735
             +    V  F+   IICR+G+P +IITDNG+   +   +  C  +KI  + S+P  PQ N
Sbjct: 1592 TIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGN 1651

Query: 1736 GVVEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 1794
            G  EA NK I   ++K +   +  W + L   L  YRTT RS+T  TPF+  YGMEA+ P
Sbjct: 1652 GQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAP 1711

Query: 1795 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHP 1854
             EV   SLR  M  K  E    +   D+L+ +EE R  A+ R Q+YQ      +++KVH 
Sbjct: 1712 AEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHN 1770

Query: 1855 REFKEGELVLKRRISQQPD-PRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNA 1913
            R F  G+LVL++      +   GK   N+EGSY V K    G   L  M G  +P   N+
Sbjct: 1771 RHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNS 1830

Query: 1914 DLVKKYF 1920
              +K+Y+
Sbjct: 1831 MHLKRYY 1837



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 47/176 (26%), Positives = 81/176 (45%), Gaps = 7/176 (3%)

Query: 776 FSENELPEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRS 835
           F++ +L      HN  L + +  +   ++ VL+DTGSS++++ K  L  ++     ++  
Sbjct: 602 FTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPV 661

Query: 836 TFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYNCLLGRP*IHDAGAVTST 895
           +  +  FDG     +G I LPI +G     + F V+   A YN +LG P IH   A+ ST
Sbjct: 662 SKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPST 721

Query: 896 LHQKLKFAKSGKLVTIHG-------EEAYLVSQLSSFSCIEAGSAEGTAFQGLTIE 944
            HQ +KF     + T+           +Y  S+L     +    ++ T   G+  E
Sbjct: 722 YHQCVKFPTHNGIFTLRAPKEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAE 777



 Score = 48.5 bits (114), Expect = 0.002
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 133 KTMEEMMEELAKELRHEIKANRGNADSFKTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQ 192
           +T+ EM  ++ +      + +R   ++ +T     ++ V +    KI   + YNG   P+
Sbjct: 173 RTISEMSSKIHRATSTAPELDRVLEETQQTPFTRRITNVSIRGAQKIK-LESYNGRNDPK 231

Query: 193 NHIIKY---VRKMGNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKS 248
             +  +   + +     DN D+     F + L   A  W++ L  N I +F +L ++F  
Sbjct: 232 EFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSIDSFHQLTSSFLK 291

Query: 249 HYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKD 308
           HY      + +   L S+SQ  +ES R +  R++     IT   +   +           
Sbjct: 292 HYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVPDEAAIVALRNAVWYDSR 351

Query: 309 YVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESS 348
           + + + + AP+   + +   +R  E   E +I+  K  S+
Sbjct: 352 FRDDITLHAPSTLEDALHRASRFIELEEEKLILARKHNST 391


>UniRef100_Q65WT1 Putative polyprotein [Oryza sativa]
          Length = 1992

 Score =  381 bits (979), Expect = e-103
 Identities = 250/784 (31%), Positives = 386/784 (48%), Gaps = 81/784 (10%)

Query: 1165 EDEEGDDIPYEITRLLEQEGRAIQPHQEEIEIINLGIPTAIYYLSKKLTDCETRYTMLEK 1224
            E+  GD  P E  R          PH++        +   +Y++S+ L D +TRY   +K
Sbjct: 1261 EERPGDTAPSEEDR----------PHRK--------VQRPVYFVSEALRDAKTRYPQAQK 1302

Query: 1225 TCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQ 1284
               A+  A+++LRHY   H   +++   P+  I      TG++ +W + LSE+D+ F+ +
Sbjct: 1303 MLYAVLMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGTGRVVKWAIELSEFDLHFEPR 1361

Query: 1285 KAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDCEEPLIGEGPDPNSKWGLVFD 1344
             AIK   LAD  A     ++ P        E+    S   + P  G        W + FD
Sbjct: 1362 HAIKSQALADFVA-----EWTPAPEPVSIPEV---NSDPSQPPHTGH-------WVMQFD 1406

Query: 1345 GAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEEAIGMRIKHLDIY 1404
            G+ +  G G G  + SP G  + +  ++ F  TNNM EYE  + G+  A G+ I+ L + 
Sbjct: 1407 GSLSLQGAGAGVTLTSPTGDVLRYLDRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVL 1466

Query: 1405 GDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM 1464
            GDS L++NQ+  E+     ++  Y    RR+  +F  +EL H+PR +N +AD L+ L+S 
Sbjct: 1467 GDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMEHHFDGIELRHVPRRDNMIADELSRLAS- 1525

Query: 1465 FRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDNKP------------------ 1506
               +     P    +RL +PS         D  GE  V ++P                  
Sbjct: 1526 ---SRAQTPPGAFEERLTQPSAR------PDPLGETGVPDRPPRPVGVQASGPEGSAPSS 1576

Query: 1507 -----WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDE 1561
                 W  +I+  L  +  P      ++  ++R++ R++L    LY+R  + +LL+C+ +
Sbjct: 1577 LRLIAWISEIQAYLTDKTLPEDREGSER--VQRISKRYVLVEGTLYRRAANGILLKCIPQ 1634

Query: 1562 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIH 1621
             +  +L+ D+H+G  G H+   T+  K  R G+YW T  +D     R+C  CQ +A +IH
Sbjct: 1635 EQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIH 1694

Query: 1622 VPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1681
             P  AL +I   WPF++ G+D++G    +A  G  ++ VAID FTKW EA     + K  
Sbjct: 1695 QPAQALQIIPLSWPFAVWGLDILGPFR-RAPGGFEYLYVAIDKFTKWPEAYPVIKIDKHS 1753

Query: 1682 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAA 1741
              KFIK  I  R+GVP++IITDNGT   + +    CE+  I+   +SP  P+ NG VE A
Sbjct: 1754 ALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERA 1812

Query: 1742 N----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 1796
            N    K +K     ++  + D W E LP  L   RTT   +TG TPF LVYG EAVLP E
Sbjct: 1813 NAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSE 1872

Query: 1797 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPRE 1856
            + + S R  M     EA+  Q R D L+ +EE+R  A  R   YQ  ++    + V  R 
Sbjct: 1873 LTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARS 1929

Query: 1857 FKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLV 1916
                +LVL+R   Q      K +P +EG Y V      G++ L   DG ELPNP N + +
Sbjct: 1930 LCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVVGVPRPGSIRLATGDGTELPNPWNIEHL 1987

Query: 1917 KKYF 1920
            ++++
Sbjct: 1988 RRFY 1991



 Score = 56.2 bits (134), Expect = 1e-05
 Identities = 38/137 (27%), Positives = 65/137 (46%), Gaps = 5/137 (3%)

Query: 782 PEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKA 841
           P   +   +A+ +S       +  VL+D G++LN++  +  D +   G  LR S  ++  
Sbjct: 568 PCVARGGQIAMVVSPTICNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVLRPSQPIIGV 627

Query: 842 FDGTRKSVLGEIDLPITIG-PETFL---ITFQVMDINASYNCLLGRP*IHDAGAVTSTLH 897
             G     LG IDLP+T G P  F    + F V D++  YN +LGRP +    A     +
Sbjct: 628 TPG-HTWPLGHIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAY 686

Query: 898 QKLKFAKSGKLVTIHGE 914
            ++K       +++HG+
Sbjct: 687 LQMKMPGPDGPISVHGD 703


>UniRef100_Q9MFD2 Orf764 protein [Beta vulgaris subsp. vulgaris]
          Length = 764

 Score =  381 bits (978), Expect = e-103
 Identities = 240/730 (32%), Positives = 387/730 (52%), Gaps = 52/730 (7%)

Query: 1194 IEIINLGIPTAIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1253
            +E I   +P  IY++S  L + E RY +LEK   A+  AA++LR Y   HT  ++S   P
Sbjct: 83   VERIKTQLP--IYFVSHVLNEAEQRYPLLEKMSLAVMIAARKLRPYFDAHTIQVLSN-HP 139

Query: 1254 IKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPN 1313
            ++   +K   +G++ RW V LSE+++ +K + AIK   LAD            +E+ +  
Sbjct: 140  LEKALQKLDTSGRLLRWAVELSEFEVEYKPRTAIKAQALADFI----------VEASYEE 189

Query: 1314 EEIVYLKSKDCEEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQIL 1373
            EE                  +P   W L  DG+A   G G G ++ SP+G+   F   I 
Sbjct: 190  EE------------------EPVGVWKLAVDGSAAQTGSGAGIIMTSPEGN--VFEYAIK 229

Query: 1374 FECTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYAR 1433
            F+ +NN  EYEA I GI+  +    K + +  DS L+ +QI+GE+E     +  Y    +
Sbjct: 230  FKASNNEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQMIK 289

Query: 1434 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDV 1493
             L      +E+  +PR +N  ADAL+ L+S   +   N   +++V           I  V
Sbjct: 290  DLAAQLISLEVVLVPRADNSQADALSKLASS-TLQDLNRTVMVEVMEQRSIDKAERINCV 348

Query: 1494 IDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDM 1553
              Q        K WY DI++  L+ + P   +    K ++R +  +++    LYKR+   
Sbjct: 349  TAQ--------KEWYDDIQEYKLTGKLPDDQTIA--KAVKRDSHWYIIYQGQLYKRSDSY 398

Query: 1554 VLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKC 1613
             LLRC  E E    M +  +G  G H  G  +S +++R G YW TM  DC ++ +KC KC
Sbjct: 399  PLLRCTSESEKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCDKC 458

Query: 1614 QIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAAS 1673
            Q +A  ++ P + L  I +P PF+  G+D++G     AS G ++++VA+DYFTKW+EA  
Sbjct: 459  QKFAPVMNQPANDLCPILNPIPFAQWGMDILGPFTT-ASGGRKYLIVAVDYFTKWIEAEP 517

Query: 1674 YTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1733
               +  + V  FI  NII R+G+P  I+ D+GT  + + ++  C EFKI+  +++   PQ
Sbjct: 518  TKFIKARQVRSFIWKNIITRFGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQ 577

Query: 1734 INGVVEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1792
             NG  EAANK I   +QK +  ++  W +++P  L   RTT + +TG +PFSL +G EAV
Sbjct: 578  SNGQAEAANKQILLALQKKLEEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAV 637

Query: 1793 LPLEVEIPSLRV-IMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKK 1851
            +P+EV +PS RV   + +++E    Q   + L+ + E R+ A  +  + + RM   ++++
Sbjct: 638  VPIEVGLPSFRVQHYDPEVNE----QLMREALDQLPEMRLQAALKLAAQKNRMSRIYNRR 693

Query: 1852 VHPREFKEGELVLKRRIS-QQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNP 1910
            V  R   EG+LVL+R  +  + +  GK+T N+EG Y + +  + G+  L  ++G  L N 
Sbjct: 694  VRHRPLTEGDLVLRRTAAVGKGNVHGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLKNS 753

Query: 1911 VNADLVKKYF 1920
             NAD++KKYF
Sbjct: 754  FNADVLKKYF 763


>UniRef100_Q5U6F6 Orf764 protein [Beta vulgaris subsp. vulgaris]
          Length = 764

 Score =  381 bits (978), Expect = e-103
 Identities = 240/730 (32%), Positives = 387/730 (52%), Gaps = 52/730 (7%)

Query: 1194 IEIINLGIPTAIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1253
            +E I   +P  IY++S  L + E RY +LEK   A+  AA++LR Y   HT  ++S   P
Sbjct: 83   VERIKTQLP--IYFVSHVLNEAEQRYPLLEKMSLAVMIAARKLRPYFDAHTIQVLSN-HP 139

Query: 1254 IKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPN 1313
            ++   +K   +G++ RW V LSE+++ +K + AIK   LAD            +E+ +  
Sbjct: 140  LEKALQKLDTSGRLLRWAVELSEFEVEYKPRTAIKAQALADFI----------VEASYEE 189

Query: 1314 EEIVYLKSKDCEEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQIL 1373
            EE                  +P   W L  DG+A   G G G ++ SP+G+   F   I 
Sbjct: 190  EE------------------EPVGVWKLAVDGSAAQTGSGAGIIMTSPEGN--VFEYAIK 229

Query: 1374 FECTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYAR 1433
            F+ +NN  EYEA I GI+  +    K + +  DS L+ +QI+GE+E     +  Y    +
Sbjct: 230  FKASNNEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQMIK 289

Query: 1434 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDV 1493
             L      +E+  +PR +N  ADAL+ L+S   +   N   +++V           I  V
Sbjct: 290  DLAAQLISLEVVLVPRADNSQADALSKLASS-TLQDLNRTVMVEVMEQRSIDKAERINCV 348

Query: 1494 IDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDM 1553
              Q        K WY DI++  L+ + P   +    K ++R +  +++    LYKR+   
Sbjct: 349  TAQ--------KEWYDDIQEYKLTGKLPDDQTIA--KAVKRDSHWYIIYQGQLYKRSDSY 398

Query: 1554 VLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKC 1613
             LLRC  E E    M +  +G  G H  G  +S +++R G YW TM  DC ++ +KC KC
Sbjct: 399  PLLRCTSESEKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCDKC 458

Query: 1614 QIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAAS 1673
            Q +A  ++ P + L  I +P PF+  G+D++G     AS G ++++VA+DYFTKW+EA  
Sbjct: 459  QKFAPVMNQPANDLCPILNPIPFAQWGMDILGPFTT-ASGGRKYLIVAVDYFTKWIEAEP 517

Query: 1674 YTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 1733
               +  + V  FI  NII R+G+P  I+ D+GT  + + ++  C EFKI+  +++   PQ
Sbjct: 518  TKFIKARQVRSFIWKNIITRFGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQ 577

Query: 1734 INGVVEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1792
             NG  EAANK I   +QK +  ++  W +++P  L   RTT + +TG +PFSL +G EAV
Sbjct: 578  SNGQAEAANKQILLALQKKLEEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAV 637

Query: 1793 LPLEVEIPSLRV-IMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKK 1851
            +P+EV +PS RV   + +++E    Q   + L+ + E R+ A  +  + + RM   ++++
Sbjct: 638  VPIEVGLPSFRVQHYDPEVNE----QLMREALDQLPEMRLQAALKLAAQKNRMSRIYNRR 693

Query: 1852 VHPREFKEGELVLKRRIS-QQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNP 1910
            V  R   EG+LVL+R  +  + +  GK+T N+EG Y + +  + G+  L  ++G  L N 
Sbjct: 694  VRHRPLTEGDLVLRRTAAVGKGNVHGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLKNS 753

Query: 1911 VNADLVKKYF 1920
             NAD++KKYF
Sbjct: 754  FNADVLKKYF 763


>UniRef100_Q65WT8 Putative polyprotein [Oryza sativa]
          Length = 2027

 Score =  380 bits (976), Expect = e-103
 Identities = 249/784 (31%), Positives = 385/784 (48%), Gaps = 81/784 (10%)

Query: 1165 EDEEGDDIPYEITRLLEQEGRAIQPHQEEIEIINLGIPTAIYYLSKKLTDCETRYTMLEK 1224
            E+  GD  P E  R          PH++        +   +Y++S+ L D +TRY   +K
Sbjct: 1296 EERPGDTAPSEEDR----------PHRK--------VQRPVYFVSEALRDAKTRYPQAQK 1337

Query: 1225 TCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQ 1284
               A+  A+++LRHY   H   +++   P+  I      TG++ +W + LSE+D+ F+ +
Sbjct: 1338 MLYAVLMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGTGRVVKWTIELSEFDLHFEPR 1396

Query: 1285 KAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDCEEPLIGEGPDPNSKWGLVFD 1344
             AIK   LAD  A     ++ P        E+    S   + P  G        W + FD
Sbjct: 1397 HAIKSQALADFVA-----EWTPAPEPVSIPEV---NSDPSQPPYTGH-------WVMQFD 1441

Query: 1345 GAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEEAIGMRIKHLDIY 1404
            G+ +  G G G  + SP G  + +  ++ F  TNNM EYE  + G+  A G+ I+ L + 
Sbjct: 1442 GSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVL 1501

Query: 1405 GDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM 1464
            GDS L++NQ+  E+     ++  Y    RR+  +F  +EL H+PR +N +AD L+ L+S 
Sbjct: 1502 GDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLAS- 1560

Query: 1465 FRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDNKP------------------ 1506
               +     P    +RL +PS         D  GE  V ++P                  
Sbjct: 1561 ---SRAQTPPGAFEERLTQPSAR------PDPLGETGVPDRPPRPVGVQASGPEGSAPSS 1611

Query: 1507 -----WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDE 1561
                 W  +I+  L  +  P      ++  ++R++ R++L    LY+R  + +LL+C+ +
Sbjct: 1612 LRLIAWISEIQAYLTDKTLPEDREGSER--VQRISKRYVLVEGTLYRRAANGILLKCIPQ 1669

Query: 1562 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIH 1621
             +  +L+ D+H+G  G H+   T+  K  R G+YW T  +D     R+C  CQ +A +IH
Sbjct: 1670 EQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIH 1729

Query: 1622 VPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1681
             P  AL +I   WPF++ G+D++G    +A  G  ++ VAID FTKW EA     + K  
Sbjct: 1730 QPAQALQIIPLSWPFAVWGLDILGPFR-RAPGGFEYLYVAIDKFTKWPEAYPVIKIDKHS 1788

Query: 1682 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAA 1741
              KFIK  I  R+GVP++IITDNGT   + +    CE+  I+   +SP  P+ NG VE A
Sbjct: 1789 ALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERA 1847

Query: 1742 N----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 1796
            N    K +K     ++  + D W E LP  L   RTT   +T  TPF LVYG EAVLP E
Sbjct: 1848 NAEILKGLKTKTFNILKKHGDSWIEELPVVLWANRTTPSRATRETPFFLVYGAEAVLPSE 1907

Query: 1797 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPRE 1856
            + + S R  M     EA+  Q R D L+ +EE+R  A  R   YQ  ++    + V  R 
Sbjct: 1908 LTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARS 1964

Query: 1857 FKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLV 1916
                +LVL+R   Q      K +P +EG Y V      G++ L   DG ELPNP N + +
Sbjct: 1965 LCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSIRLATGDGTELPNPWNIEHL 2022

Query: 1917 KKYF 1920
            ++++
Sbjct: 2023 RRFY 2026



 Score = 57.0 bits (136), Expect = 6e-06
 Identities = 39/137 (28%), Positives = 65/137 (46%), Gaps = 5/137 (3%)

Query: 782 PEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKA 841
           P   +   +A+ +S       +  VL+D G++LNV+  +  D +   G  LR S  ++  
Sbjct: 603 PCVARGGQIAMVVSPTVCNVKLGRVLIDGGAALNVLSPAAFDAIKAPGMMLRPSQPIIGV 662

Query: 842 FDGTRKSVLGEIDLPITIG-PETFL---ITFQVMDINASYNCLLGRP*IHDAGAVTSTLH 897
             G     LG IDLP+T G P  F    + F V D++  YN +LGRP +    A     +
Sbjct: 663 TPG-HTWPLGHIDLPVTFGGPANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAY 721

Query: 898 QKLKFAKSGKLVTIHGE 914
            ++K       +++HG+
Sbjct: 722 LQMKMPCPDSPISVHGD 738



 Score = 47.4 bits (111), Expect = 0.004
 Identities = 70/350 (20%), Positives = 138/350 (39%), Gaps = 24/350 (6%)

Query: 73  TPSTAAGTSGTANNVLIP--ATNAVSINATLPQTTAAVTEPLVHAIPQGVNINTQHGSIP 130
           T ++ A T+G+A++      A  AV  +A  P +T +  E L        +I  +     
Sbjct: 129 TKASGAATTGSASSRRRARRAAAAVRRSAATPSSTPSTREDLRGEQDARASIERRRNDRS 188

Query: 131 VTKTMEEMMEELAKELRHEIKANRGNADSFKTQD-------LCLVSKVDVPKKFKIPDFD 183
                E      A   R   +  RGN  S            +  +  V  P +F+    +
Sbjct: 189 AAHATEG-----ASSSRVSPRHGRGNQPSVPPVGGVGCRAFVASLRNVRWPPRFRPTIAE 243

Query: 184 RYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELA 243
           +Y+G   P   +  Y   +     +D +M + F  +L   A  W  +L    +H++++L 
Sbjct: 244 KYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMTLKGQARGWLMNLPPASVHSWEDLC 303

Query: 244 AAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFL 302
             F  ++   T  +P  E  L ++ ++ +ES R Y QR+      I P +    +   F 
Sbjct: 304 QQFTMNFQ-GTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTI-PCIPAHAVIYAFR 361

Query: 303 KTLKKD-YVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGN---- 357
             ++ +  +E++    P   +E+  +  R+  A +E    +  + S V AS   G+    
Sbjct: 362 GGVRHNRMLEKIASKEPQTTAELFQLADRV--ARKEEAWTWNPSGSGVAASAAPGSAAQA 419

Query: 358 GHHKKKETEVGMVSAGAGQSMATVAPINATQMPPSYPYQKQQLPVQQQQQ 407
           G   ++  +  + S   G  +A      AT+       +K++  V  +++
Sbjct: 420 GRRDRRRKKRSVRSDDEGHVLAVEGASRATRKGRPASDKKKEASVPSRER 469


>UniRef100_Q7XL20 OSJNBa0079M09.11 protein [Oryza sativa]
          Length = 2028

 Score =  380 bits (975), Expect = e-103
 Identities = 238/738 (32%), Positives = 375/738 (50%), Gaps = 51/738 (6%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            +Y++S+ L D +TRY   +K   A+  A+++LRHY   H   +++   P+  I      T
Sbjct: 1319 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1377

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ +W + LSE+D+ F+ + AIK   LAD  A              P  E V +     
Sbjct: 1378 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWT-----------PAPETVSIPEAST 1426

Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
            +   + +     + W + FDG+ +  G G G  ++SP G  + +  ++ F  TNNM EYE
Sbjct: 1427 DPSQLPQ----TAHWVMQFDGSLSLQGAGAGVTLISPNGDVLRYLVRLDFRATNNMAEYE 1482

Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
              + G+  A G+ I+ L + GDS L++NQ+  E+     ++  Y    RR+  +F  +EL
Sbjct: 1483 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIEL 1542

Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS--------------HVFTI 1490
             H+PR +N +AD L+ L+S    +     P    +RL +PS              H   +
Sbjct: 1543 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPSARPDPSGETDAPDRHPRPV 1598

Query: 1491 GDVIDQAGENMVDNK---PWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILY 1547
            G       E++  +     W  +I+  L  +  P      ++  ++R++ R++L    LY
Sbjct: 1599 GVQASGPEESVPSSLRLIAWISEIQTYLTDKTLPEDREGSER--VQRISKRYVLVEGTLY 1656

Query: 1548 KRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHA 1607
            +R  + +LL+C+ + +  +L+ D+H+G  G H+   T+  K  R G+YW T  +D     
Sbjct: 1657 RRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLV 1716

Query: 1608 RKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTK 1667
            R+C  CQ +A +IH P  AL +I   WPF++ G+D++G  + +A  G  ++ VAID FTK
Sbjct: 1717 RRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFK-RAPGGFEYLYVAIDKFTK 1775

Query: 1668 WVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNS 1727
            W EA     + K    KFIK  I  R+GVP++IITDNGT   + +    CE+  I+   +
Sbjct: 1776 WPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFA 1834

Query: 1728 SPYRPQINGVVEAAN----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATP 1782
            SP  P+ NG VE AN    K +K     ++  + D W E LP  L   RTT   +TG TP
Sbjct: 1835 SPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETP 1894

Query: 1783 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQA 1842
            F LVYG EAVLP E+ + S R  M     EA+  Q R D L+ +EE+R  A  R   YQ 
Sbjct: 1895 FFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQ 1951

Query: 1843 RMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHM 1902
             ++    + V  R     +LVL+R   Q      K +P +EG Y V      G++ L   
Sbjct: 1952 SLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPIWEGPYRVIGVPRPGSVRLATG 2009

Query: 1903 DGVELPNPVNADLVKKYF 1920
            DG ELPNP N + +++++
Sbjct: 2010 DGTELPNPWNIEHLRRFY 2027



 Score = 54.3 bits (129), Expect = 4e-05
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 803 ISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIG-P 861
           +  VL+D G++LN++  +  D +   G  L+ S  ++    G     LG IDLP+T G P
Sbjct: 625 LGRVLIDGGAALNILSPAAFDAIKAPGMVLQPSQPIIGVTPG-HTWPLGHIDLPVTFGGP 683

Query: 862 ETFL---ITFQVMDINASYNCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLVTIHGE 914
             F    ++F V D++  YN +LGRP +    A     + ++K    G  +++ G+
Sbjct: 684 ANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPISVRGD 739


>UniRef100_Q60D74 Putative polyprotein [Oryza sativa]
          Length = 1869

 Score =  379 bits (973), Expect = e-103
 Identities = 245/751 (32%), Positives = 373/751 (49%), Gaps = 59/751 (7%)

Query: 1178 RLLEQEGRAIQPHQEEIEIINLGIPTAIYYLSKKLTDCETRYTMLEKTCCALAWAAKRLR 1237
            RL E+  R   P +E+     +  P  +Y++S+ L D +TRY   +K   A+  A+++LR
Sbjct: 1169 RLGEERPRDAAPSEEDRPHRKVQRP--VYFVSEALRDAKTRYPQAQKMLYAILMASRKLR 1226

Query: 1238 HYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHPA 1297
            HY   H   +++   P+  I      TG++ +W + LSE+D+ F+ + AIK   LAD  A
Sbjct: 1227 HYFQAHRVTVVTSY-PLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVA 1285

Query: 1298 YQPLDDYQPIESDFPNEEIVYLKSKDCEEPLIGEGPDP---NSKWGLVFDGAANAYGKGI 1354
                          P  E+V +       P    GP      + W + FDG+ +  G G 
Sbjct: 1286 EWT-----------PAPELVSV-------PEASSGPSQLPHTAHWVMQFDGSLSLQGAGA 1327

Query: 1355 GAVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQI 1414
            G  + SP G  + +  ++ F  TNNM EYE  + G+  A G+ I+ L + GDS L++NQ+
Sbjct: 1328 GVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQV 1387

Query: 1415 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVP 1474
              E+     ++  Y    RR+  +F  +EL H+PR +N MAD L+ L+S    +     P
Sbjct: 1388 CKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMMADELSRLAS----SRAQTPP 1443

Query: 1475 IIKVQRLERPSHVFTIGDVIDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRR 1534
                +RL +PS +                   W  +I+  L  +  P      ++  + R
Sbjct: 1444 GAFEERLAQPSALIA-----------------WIAEIQAYLTDKTLPEDREGSER--VHR 1484

Query: 1535 LASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGY 1594
            ++ R++L    LY+R  + +LL+C+   +   L+ D+H+G  G H+   T+  K  R G+
Sbjct: 1485 ISKRYVLVEGTLYRRAANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGF 1544

Query: 1595 YWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNG 1654
            YW T  +D     R+C  CQ +A +IH P  AL  I   WPF++ G+ ++G    +A  G
Sbjct: 1545 YWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQTIPLSWPFAVWGLHILGPFR-RAPGG 1603

Query: 1655 HRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQ 1714
              ++ VAID FTKW EA     + K    KFIK  I  R+GVP++IITDNGT   + +  
Sbjct: 1604 FEYLYVAIDKFTKWPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFG 1662

Query: 1715 ALCEEFKIEHHNSSPYRPQINGVVEAAN----KNIKRIVQKMVTTYRD-WHEMLPYALHG 1769
              CE+  I+   +SP  P+ NG VE AN    K +K     ++  + D W E LP  L  
Sbjct: 1663 DYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWA 1722

Query: 1770 YRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEK 1829
             RTT   +TG TPF LVYG EAVLP E+ + S R  M     EA+  Q R D L+ +EE+
Sbjct: 1723 NRTTPSRATGETPFFLVYGAEAVLPSELTLKSPRATM---YCEADQDQLRRDDLDYLEER 1779

Query: 1830 RMDAMARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVK 1889
            R  A  R   YQ  ++      V  R     +LVL+R   Q      K +P +EG Y V 
Sbjct: 1780 RRRAALRAARYQQSLRRYHQCHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVV 1837

Query: 1890 KAFSGGALILTHMDGVELPNPVNADLVKKYF 1920
                 G++ L   DG ELPNP N + +++++
Sbjct: 1838 GVPRPGSIRLATGDGTELPNPWNIEHLRRFY 1868



 Score = 56.2 bits (134), Expect = 1e-05
 Identities = 38/137 (27%), Positives = 65/137 (46%), Gaps = 5/137 (3%)

Query: 782 PEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKA 841
           P   +   +A+ +S       +  VL+D G++LN++  +  D +   G  LR S  ++  
Sbjct: 476 PCVARGGQIAMVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKALGMMLRPSQPIIGV 535

Query: 842 FDGTRKSVLGEIDLPITIG-PETFL---ITFQVMDINASYNCLLGRP*IHDAGAVTSTLH 897
             G     LG IDLP+T G P  F    + F V D++  YN +LGRP +    A     +
Sbjct: 536 TPG-HTWPLGHIDLPVTFGGPANFRTERVNFDVADLSPPYNAVLGRPALVKFMAAVHYAY 594

Query: 898 QKLKFAKSGKLVTIHGE 914
            ++K       +++HG+
Sbjct: 595 LQMKMPGPDGPISVHGD 611



 Score = 47.0 bits (110), Expect = 0.006
 Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 12/240 (5%)

Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
           P +F+    ++Y+G   P   +  Y   +     +D +M + F  +L   A  W  +L  
Sbjct: 107 PPRFRPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPP 166

Query: 234 NDIHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRWRGAAARITPAL 292
             +H++++L   F  ++   T  +P  E  L ++ ++ +ES R Y QR+      I P +
Sbjct: 167 ASVHSWEDLCQQFTMNFQ-GTYPRPGEEADLHAVQRRDDESLRSYIQRFCQVRNTI-PCI 224

Query: 293 DEEEMTQTFLKTLKKD-YVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNA 351
               +   F   ++ +  +E++    P   +E+  +  R+  A +E    +  + S V A
Sbjct: 225 PAHAVIYAFRGGVRHNRMLEKIASKEPQTTAELFQLADRV--ARKEEAWTWNPSGSGVAA 282

Query: 352 SKRYGN----GHHKKKETEVGMVSAGAGQSMATVAPINATQ--MPPSYPYQKQQLPVQQQ 405
           S   G+    G   ++  +  + S   G  +A      ATQ   P S   +K   P +++
Sbjct: 283 SAAPGSTAQTGRRDRRRKKRSVHSDDEGHVLAVEGASRATQKGRPASDKKKKAGAPSRER 342


>UniRef100_Q84T73 Putative polyprotein [Oryza sativa]
          Length = 2026

 Score =  379 bits (972), Expect = e-103
 Identities = 240/744 (32%), Positives = 372/744 (49%), Gaps = 63/744 (8%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            +Y++S+ L D +TRY   +K   A+  A+++LRHY   H   +++   P+  I      T
Sbjct: 1317 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1375

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ +W + LSE+D+ F+ + AIK   LAD  A              P  E V +     
Sbjct: 1376 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWT-----------PAPETVSIPEASA 1424

Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
            +   +       + W + FDG+ +  G G G  + SP G  + +  ++ F  TNNM EYE
Sbjct: 1425 DPSQLPHA----AHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYE 1480

Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
              + G+  A G+ I+ L + GDS L++NQ+  E+     ++  Y    RR+  +F  +EL
Sbjct: 1481 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIEL 1540

Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDN 1504
             H+PR +N +AD L+ L+S    +     P    +RL +PS         D  GE    +
Sbjct: 1541 RHVPRRDNMIADELSRLAS----SRTQTPPGAFEERLTQPSAR------PDPLGETDAPD 1590

Query: 1505 KP-----------------------WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLL 1541
            +P                       W  +I+  L  +  P      ++  ++R++ R++L
Sbjct: 1591 RPPRPVGVQASGPEGSAPSSLRLIAWISEIQTYLTDKTLPEDREGSER--VQRISKRYVL 1648

Query: 1542 DGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEH 1601
                LY+R  + +LL+C+ + +  +L+ D+H+G  G H+   T+  K  R G+YW T  +
Sbjct: 1649 VEGTLYRRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALN 1708

Query: 1602 DCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVA 1661
            D     R+C  CQ +A +IH P  AL VI   WPF++ G+D++G  + +A  G  ++ VA
Sbjct: 1709 DAVDLVRRCRACQFHARQIHQPAQALQVIPLSWPFAVWGLDILGPFK-RAPGGFEYLYVA 1767

Query: 1662 IDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFK 1721
            ID FTKW EA     + K    KFIK  I  R+GVP++IITDNGT   + +    CE+  
Sbjct: 1768 IDKFTKWPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMG 1826

Query: 1722 IEHHNSSPYRPQINGVVEAAN----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRS 1776
            I+   +SP  P+ NG VE AN    K +K     ++  + D W E LP  L   RTT   
Sbjct: 1827 IKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPVVLWANRTTPSR 1886

Query: 1777 STGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMAR 1836
            +TG TPF LVYG EAVLP E+ + S R  M     EA+  Q R D L+ +EE+R  A  R
Sbjct: 1887 ATGETPFFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALR 1943

Query: 1837 GQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGA 1896
               YQ  ++    + V  R     +LVL+R   Q      K +P +EG Y V      G+
Sbjct: 1944 AARYQQSLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGS 2001

Query: 1897 LILTHMDGVELPNPVNADLVKKYF 1920
            + L   DG ELPNP N + +++++
Sbjct: 2002 VRLATGDGTELPNPWNIEHLRRFY 2025



 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 803 ISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIG-P 861
           +  VL+D G++LN++     D +   G  LR S  ++    G     LG IDLP+T G P
Sbjct: 623 LGRVLIDGGAALNILSPVAFDAIKAPGMVLRPSQPIIGVTPG-HTWPLGHIDLPVTFGGP 681

Query: 862 ETFL---ITFQVMDINASYNCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLVTIHGE 914
             F    ++F V D++  YN +LGRP +    A     + ++K    G  +++HG+
Sbjct: 682 ANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPISVHGD 737


>UniRef100_Q6L5D6 Putative polyprotein [Oryza sativa]
          Length = 1514

 Score =  378 bits (970), Expect = e-102
 Identities = 237/724 (32%), Positives = 366/724 (49%), Gaps = 62/724 (8%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            +Y++S+ L D +TRY   +K   A+  A+++LRHY   H   +++   P+  I      T
Sbjct: 844  VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 902

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ RW + LSE+D+ F+ + AIK   LAD  A     ++ P               +  
Sbjct: 903  GRVVRWAIELSEFDLRFEPRHAIKSQALADFVA-----EWTPAP-------------EPV 944

Query: 1325 EEPLIGEGPDP---NSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMV 1381
              P    GP      + W + FDG+ +  G G G  + SP G  + +  ++ F  TNNM 
Sbjct: 945  SAPEASSGPTQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMA 1004

Query: 1382 EYEACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTK 1441
            EYE  + G+  A G+ I+ L + GDS L++NQ+  E++    ++  Y    RR+  +F +
Sbjct: 1005 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDR 1064

Query: 1442 VELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENM 1501
            +EL H+PR +N +AD L+ L+S                R + P   F      ++  + +
Sbjct: 1065 IELRHVPRRDNAVADELSRLAS---------------SRAQTPPGAFE-----ERLAQPL 1104

Query: 1502 VDNKPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDE 1561
            +    W  +I+  L  +  P      ++  +RR++ R++L    LY+R  + VLL+C+  
Sbjct: 1105 I---AWITEIQAYLADKTLPEDREGSER--VRRISKRYVLVEGTLYRRAANGVLLKCIPR 1159

Query: 1562 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIH 1621
             +  +L+ DVH+G  G H+   T+  K  R G+YW T  +D     R+C  CQ +A + H
Sbjct: 1160 EQGVELLADVHEGECGAHSVSRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHARQTH 1219

Query: 1622 VPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1681
             P  AL  I   WPF++ G+D++GR    A  G  ++ VA+D FTKW EA     + K  
Sbjct: 1220 QPAQALQTIPLSWPFAVWGLDILGR----APGGFEYLYVAVDKFTKWPEAYPVIKIDKHS 1275

Query: 1682 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAA 1741
              KFI+  I  R+GVP++IITDNGT   + +    CE+  I+   +SP  P+ NG VE A
Sbjct: 1276 ALKFIR-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPTHPRSNGQVERA 1334

Query: 1742 N----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 1796
            N    K +K     ++  + D W E LP  L   RTT   +TG TPF LVYG EAVLP E
Sbjct: 1335 NAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSE 1394

Query: 1797 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPRE 1856
            + + S RV M     EA+  Q R D L+ +EE+R  A  R   YQ  ++    + V  R 
Sbjct: 1395 LTLRSPRVTM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARS 1451

Query: 1857 FKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLV 1916
                +LVL+R   Q      K +P +EG Y V      G++ L   DG ELPNP N + +
Sbjct: 1452 LCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNPWNIEHL 1509

Query: 1917 KKYF 1920
             +++
Sbjct: 1510 CRFY 1513



 Score = 60.1 bits (144), Expect = 7e-07
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 774 LWFSENELPEA-GKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPL 832
           L F + + P    +   +A+ +S       +  VL+D G++LN++  +  D +   G  L
Sbjct: 580 LTFDQTDHPSCVARGGQIAMVVSPTVCNVKLGRVLIDGGAALNILSPAAFDAIKAPGMVL 639

Query: 833 RRSTFLVKAFDGTRKSVLGEIDLPITIGPE----TFLITFQVMDINASYNCLLGRP*IHD 888
           R S  ++    G     LG IDLP+T G      T  + F V D++  YN +LGRP +  
Sbjct: 640 RPSQPIIGVTPG-HTWPLGHIDLPVTFGGSANFRTERVDFDVADLSLPYNAVLGRPALVK 698

Query: 889 AGAVTSTLHQKLKFAKSGKLVTIHGE 914
             A     + ++K    G  +T+HG+
Sbjct: 699 FMAAVHYAYLQMKMPGPGGPITVHGD 724


>UniRef100_Q8S0W5 Putative polyprotein [Oryza sativa]
          Length = 2030

 Score =  377 bits (968), Expect = e-102
 Identities = 237/738 (32%), Positives = 372/738 (50%), Gaps = 51/738 (6%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            +Y++S+ L D +TRY   +K   A+  A+++LRHY   H   +++   P+  I      T
Sbjct: 1321 VYFISETLRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1379

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ +W + LSE+D+ F+ + AIK   LAD  A              P  E V +     
Sbjct: 1380 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWT-----------PAPETVSMPEAST 1428

Query: 1325 EEPLIGEGPDPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYE 1384
                + +     + W + FDG+ +  G G G  + SP G  + +  ++ F  TNNM EYE
Sbjct: 1429 NLSQLPQ----TAHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYE 1484

Query: 1385 ACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1444
              + G+  A G+ I+ L + GDS L++NQ+  E+     ++  Y    RR+  +F  +EL
Sbjct: 1485 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMNAYVRQVRRMERHFDGIEL 1544

Query: 1445 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSH-----------------V 1487
             H+PR +N +AD L+ L+S    +     P    +RL +PS                  V
Sbjct: 1545 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPSARPNPLGETDAPDRPPRAV 1600

Query: 1488 FTIGDVIDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILY 1547
                  ++ +  N +    W  +I+  L  +  P      ++  ++R++ R++L    LY
Sbjct: 1601 GVQASGLEGSAPNSLRLIAWISEIQTYLTDKTLPEDRQGSER--VQRISKRYVLVEGTLY 1658

Query: 1548 KRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHA 1607
            +R  + +LL+C+ + +  +L+ D+H+G  G H+   T+  K  R G+YW T  +D     
Sbjct: 1659 RRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLV 1718

Query: 1608 RKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTK 1667
            R+C  CQ +A +IH P  AL +I   WPF++ G+D++G  + +A  G  ++ VAID FTK
Sbjct: 1719 RRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFK-RALGGFEYLYVAIDKFTK 1777

Query: 1668 WVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNS 1727
            W EA     + K    KFIK  I  R+GVP++IITDNGT   + +    CE+  I+   +
Sbjct: 1778 WPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFA 1836

Query: 1728 SPYRPQINGVVEAAN----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATP 1782
            SP  P+ NG VE AN    K +K     ++  + D W E LP  L   RTT   +TG TP
Sbjct: 1837 SPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETP 1896

Query: 1783 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQA 1842
            F LVYG EAVLP E+ + S R  M     EA+  Q R D L+ +EE+R  A  R   YQ 
Sbjct: 1897 FFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQ 1953

Query: 1843 RMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHM 1902
             ++    + V  R     +LVL+R   Q      K +P +EG Y V      G++ L   
Sbjct: 1954 SLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPIWEGPYRVIGVPRPGSVRLATG 2011

Query: 1903 DGVELPNPVNADLVKKYF 1920
            DG ELPNP N + +++++
Sbjct: 2012 DGTELPNPWNIEHLRRFY 2029



 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 803 ISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIG-P 861
           +  VL+D G++LN++  +  D +   G  LR S  ++    G     LG IDLP+T G P
Sbjct: 624 LGRVLIDGGAALNILSPAAFDAIKAPGMVLRPSQPIIGVTPG-HTWPLGHIDLPVTFGGP 682

Query: 862 ETFL---ITFQVMDINASYNCLLGRP*IHDAGAVTSTLHQKLKFAKSGKLVTIHGE 914
             F    ++F V D++  YN +LGRP +    A     + ++K    G  +++HG+
Sbjct: 683 ANFRTERVSFDVADLSLPYNAVLGRPALVKFMAAVHYAYLQMKMPGPGGPISVHGD 738


>UniRef100_Q84JT1 Putative polyprotein [Oryza sativa]
          Length = 1911

 Score =  372 bits (955), Expect = e-101
 Identities = 239/741 (32%), Positives = 374/741 (50%), Gaps = 57/741 (7%)

Query: 1205 IYYLSKKLTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1264
            +Y++S+ L D +TRY   +K   A+  A+++LRHY   H   +++   P+  I      T
Sbjct: 1202 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1260

Query: 1265 GKIARWQVLLSEYDIVFKTQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDC 1324
            G++ RW + LSE+D+ F+++ AIK   LAD  A     ++ P               +  
Sbjct: 1261 GRVVRWTIELSEFDLRFESRHAIKSQALADFVA-----EWTPAP-------------EPV 1302

Query: 1325 EEPLIGEGPDP---NSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMV 1381
              P    GP      + W + FDG+ +  G G G  + SP G  + +  ++ F  TNNM 
Sbjct: 1303 SAPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTMTSPSGDVLRYLVRLDFRATNNMA 1362

Query: 1382 EYEACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTK 1441
            EYE  + G+  A G+ I+ L + GDS L++NQ+  E++    ++  Y    RR+  +F  
Sbjct: 1363 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDG 1422

Query: 1442 VELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS-HVFTIGDV------- 1493
            +EL H+PR +N +AD L+ L+S    +     P +  +RL +PS     +G+        
Sbjct: 1423 IELRHVPRRDNAVADELSRLAS----SRAQTPPGVFEERLAQPSARPDPLGETDAPERPP 1478

Query: 1494 ----IDQAG-ENMVDNKP----WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGD 1544
                +  +G E    + P    W  +I+  L+ +  P      ++  +RR++ R++L   
Sbjct: 1479 RPVGVQASGPEGSAPSSPRLIAWITEIQAYLVDKTLPEDREGSER--VRRISKRYVLVEG 1536

Query: 1545 ILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCY 1604
             LY+R  + VLL+C+   +  +L+ DVH+G  G H+   T+  K  R G+YW T  +D  
Sbjct: 1537 TLYRRAANGVLLKCIPREQGVELLADVHEGECGAHSASRTLVGKAFRQGFYWPTALNDAV 1596

Query: 1605 QHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDY 1664
               R+C  CQ +A + H    AL  I   WPF++ G D++G    +A  G  ++ V +D 
Sbjct: 1597 DLVRRCKACQFHARQTHQLAQALQTIPLSWPFAVWGFDILGPFR-RAPGGFEYLYVTVDK 1655

Query: 1665 FTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 1724
            FTKW +A     + K    KFI+  I  R+GVP++IITDNGT   + +    CE+  I+ 
Sbjct: 1656 FTKWPQAYPVIKIDKHSALKFIR-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKL 1714

Query: 1725 HNSSPYRPQINGVVEAAN----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTG 1779
              +SP  P+ NG VE AN    K +K     ++  + D W E LP  L   RTT   +TG
Sbjct: 1715 CFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATG 1774

Query: 1780 ATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQS 1839
             TPF LVYG EAVLP E+ + S RV M     EA+  Q R D L+ +EE+R  A  R   
Sbjct: 1775 ETPFFLVYGAEAVLPSELTLRSPRVTM---YCEADQDQLRRDDLDYLEERRRRAALRAAR 1831

Query: 1840 YQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALIL 1899
            YQ  ++    + V  R     +LVL+R   Q      K +P +EG Y V      G++ L
Sbjct: 1832 YQQSLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSVRL 1889

Query: 1900 THMDGVELPNPVNADLVKKYF 1920
               DG ELPNP N + +++++
Sbjct: 1890 ATGDGTELPNPWNIEHLRRFY 1910



 Score = 52.8 bits (125), Expect = 1e-04
 Identities = 36/137 (26%), Positives = 62/137 (44%), Gaps = 5/137 (3%)

Query: 782 PEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKA 841
           P   +   +A+ +S       +  VL+D G++LN++  +    +   G  L  S  ++  
Sbjct: 603 PCVARGGQIAMVVSPTVCNVKLGRVLIDGGAALNILSPAAFGAIKAPGMVLWPSQPIIGV 662

Query: 842 FDGTRKSVLGEIDLPITIGPETFL----ITFQVMDINASYNCLLGRP*IHDAGAVTSTLH 897
             G     LG IDLP+T G         + F V D++  YN +LGRP +    A     +
Sbjct: 663 TPG-HTWPLGHIDLPVTFGGSANFRMERVDFDVADLSLPYNAVLGRPALVKFMAAVHYAY 721

Query: 898 QKLKFAKSGKLVTIHGE 914
            ++K    G  +T+HG+
Sbjct: 722 LQMKMPGPGGPITVHGD 738



 Score = 42.0 bits (97), Expect = 0.19
 Identities = 26/109 (23%), Positives = 53/109 (47%), Gaps = 2/109 (1%)

Query: 174 PKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 233
           P +F+    ++Y+G   P   +  Y   +     +D +M + F  +L   A  W  +L  
Sbjct: 234 PPRFRPTITEKYDGNVNPAEFLQIYTTGIEATGGDDRVMANFFPMALKGQARGWLMNLPP 293

Query: 234 NDIHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRW 281
             +H++++L   F +++   T  +P  E  L ++ ++ +ES R Y QR+
Sbjct: 294 ASVHSWEDLCQQFTTNFQ-GTYPRPGEEADLHAVQRRDDESLRSYIQRF 341


>UniRef100_Q5W669 Putatve polyprotein [Oryza sativa]
          Length = 1905

 Score =  372 bits (955), Expect = e-101
 Identities = 248/784 (31%), Positives = 380/784 (47%), Gaps = 88/784 (11%)

Query: 1165 EDEEGDDIPYEITRLLEQEGRAIQPHQEEIEIINLGIPTAIYYLSKKLTDCETRYTMLEK 1224
            E+  GD  P           R  +PH++        +   +Y++S+ L D +TRY   +K
Sbjct: 1181 EERPGDTAP----------SRGDRPHRK--------VQWPVYFVSEALRDAKTRYPQAQK 1222

Query: 1225 TCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQ 1284
               A+  A+++LRHY   H   +++   P+  I      TG++ +W + LSE+D+ F+ +
Sbjct: 1223 MLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGTGRVVKWAIELSEFDLHFEPR 1281

Query: 1285 KAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYLKSKDCEEPLIGEGPDPNSKWGLVFD 1344
             AIK   LAD  A              P  E V +         +       + W + FD
Sbjct: 1282 HAIKSQALADFVAEWT-----------PAPETVSIPEASTNPSQLPH----TTHWVMQFD 1326

Query: 1345 GAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEEAIGMRIKHLDIY 1404
            G+ +  G G G  + SP G  + +  ++ F  TNNM EYE  + G+  A G+ I+ L + 
Sbjct: 1327 GSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVL 1386

Query: 1405 GDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM 1464
            GDS L++NQ+  E+     ++  Y    RR+  +F  +EL H+PR +N +AD L+ L+S 
Sbjct: 1387 GDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLAS- 1445

Query: 1465 FRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDNKP------------------ 1506
               +     P    +RL RPS         D  GE    ++P                  
Sbjct: 1446 ---SRAQTPPGAFEERLTRPSAR------PDPLGETDAPDRPPRPVGVQASGPEGSAPSS 1496

Query: 1507 -----WYYDIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDE 1561
                 W  +I+  L  +  P      ++  ++R++ R++L    LY+R  + +LL+C+ +
Sbjct: 1497 LRLIAWISEIQTYLTDKTLPEDREGSER--VQRISKRYVLVEGTLYRRAANGILLKCIPQ 1554

Query: 1562 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIH 1621
             +  +L+ D+H+G  G H+   T   K  R G+YW T  +D     R+C  CQ +A +IH
Sbjct: 1555 EQGVELLADIHEGECGAHSASRTQVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIH 1614

Query: 1622 VPPHALNVISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 1681
             P  AL +I   WPF++ G+D++G I+ +A  G  ++ VAID FTKW EA     + K  
Sbjct: 1615 QPAQALQIIPLSWPFAVWGLDILGPIK-RAPGGFEYLYVAIDKFTKWPEAYPVVKIDKHS 1673

Query: 1682 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAA 1741
              KFIK  I  R+GVP++IITDNGT   + +    CE+  I+   +SP  P+ NG VE A
Sbjct: 1674 ALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERA 1732

Query: 1742 N----KNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 1796
            N    K +K     ++  + D W E LP  L   RTT   +TG TPF LVYG EAVLP E
Sbjct: 1733 NAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSE 1792

Query: 1797 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPRE 1856
            + + S R  M     EA+  Q R D L+ +EE+R  A  R   Y  R        V  R 
Sbjct: 1793 LTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYHQR-------HVRARS 1842

Query: 1857 FKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLV 1916
                +LVL+R   Q      K +P +EG Y V      G++ L   DG ELPNP N + +
Sbjct: 1843 LCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNPWNIEHL 1900

Query: 1917 KKYF 1920
            ++++
Sbjct: 1901 RRFY 1904



 Score = 53.5 bits (127), Expect = 6e-05
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 782 PEAGKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKA 841
           P   +   +A+ +S       +  VL+D G++LN++  +  D +   G  L+ S  ++  
Sbjct: 603 PCVARGGQIAMVVSPTICNVKLGRVLIDGGAALNIISPAAFDAIKAPGMVLQPSQPIIGV 662

Query: 842 FDGTRKSVLGEIDLPITIGPE----TFLITFQVMDINASYNCLLGRP*IHDAGAVTSTLH 897
             G     LG IDLP+T G      T  + F V D++  YN +LGRP +    A     +
Sbjct: 663 TPG-HTWPLGHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMAAVHYAY 721

Query: 898 QKLKFAKSGKLVTIHGE 914
            ++K    G  +++ G+
Sbjct: 722 LQMKMPGPGGPISVRGD 738


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,231,494,515
Number of Sequences: 2790947
Number of extensions: 142846912
Number of successful extensions: 428650
Number of sequences better than 10.0: 4561
Number of HSP's better than 10.0 without gapping: 3707
Number of HSP's successfully gapped in prelim test: 856
Number of HSP's that attempted gapping in prelim test: 413425
Number of HSP's gapped (non-prelim): 9835
length of query: 1920
length of database: 848,049,833
effective HSP length: 142
effective length of query: 1778
effective length of database: 451,735,359
effective search space: 803185468302
effective search space used: 803185468302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)