BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.6 + phase: 0
(80 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9M206 Transport protein subunit-like [Arabidopsis tha... 132 3e-30
UniRef100_Q8GY93 Putative transport protein subunit [Arabidopsis... 130 6e-30
UniRef100_P38389 Protein transport protein SEC61 beta subunit [A... 130 6e-30
UniRef100_Q9FKK1 Arabidopsis thaliana genomic DNA, chromosome 5,... 97 1e-19
UniRef100_Q6XI06 Similar to Drosophila melanogaster Sec61beta [D... 61 6e-09
UniRef100_UPI0000432899 UPI0000432899 UniRef100 entry 61 8e-09
UniRef100_UPI00002F99FD UPI00002F99FD UniRef100 entry 60 1e-08
UniRef100_UPI0000361A47 UPI0000361A47 UniRef100 entry 60 1e-08
UniRef100_Q7SGN7 Predicted protein [Neurospora crassa] 60 1e-08
UniRef100_UPI000023DC33 UPI000023DC33 UniRef100 entry 60 2e-08
UniRef100_Q8AVT7 Sec61beta-prov protein [Xenopus laevis] 60 2e-08
UniRef100_Q9HFC7 Protein transport protein SEC61 beta subunit [Y... 60 2e-08
UniRef100_UPI00003ABDD8 UPI00003ABDD8 UniRef100 entry 59 3e-08
UniRef100_Q6DGH3 Zgc:92922 [Brachydanio rerio] 59 3e-08
UniRef100_Q7PPC9 ENSANGP00000022309 [Anopheles gambiae str. PEST] 59 3e-08
UniRef100_Q7PN12 ENSANGP00000014901 [Anopheles gambiae str. PEST] 59 3e-08
UniRef100_Q95XS2 Hypothetical protein Y38F2AR.9 [Caenorhabditis ... 59 3e-08
UniRef100_UPI00001C91F7 UPI00001C91F7 UniRef100 entry 58 5e-08
UniRef100_Q9CQS8 Protein transport protein SEC61 beta subunit [M... 58 5e-08
UniRef100_P60468 Protein transport protein SEC61 beta subunit [H... 58 5e-08
>UniRef100_Q9M206 Transport protein subunit-like [Arabidopsis thaliana]
Length = 81
Score = 132 bits (331), Expect = 3e-30
Identities = 67/75 (89%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
Query: 3 LGGGAPQRGSAAATASMRRRKTAGGGAS-GGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 61
+GGGAPQRGSAAATASMRRRK AGG +S GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2 VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61
Query: 62 FIAFVAVLHVVGKLY 76
FIAFVAVLHV+GKLY
Sbjct: 62 FIAFVAVLHVMGKLY 76
>UniRef100_Q8GY93 Putative transport protein subunit [Arabidopsis thaliana]
Length = 81
Score = 130 bits (328), Expect = 6e-30
Identities = 66/75 (88%), Positives = 71/75 (94%), Gaps = 1/75 (1%)
Query: 3 LGGGAPQRGSAAATASMRRRKTAGGGAS-GGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 61
+GGGAPQRGSAAATASMR+RK AGG +S GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2 VGGGAPQRGSAAATASMRKRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61
Query: 62 FIAFVAVLHVVGKLY 76
FIAFVAVLHV+GKLY
Sbjct: 62 FIAFVAVLHVMGKLY 76
>UniRef100_P38389 Protein transport protein SEC61 beta subunit [Arabidopsis
thaliana]
Length = 82
Score = 130 bits (328), Expect = 6e-30
Identities = 67/78 (85%), Positives = 71/78 (90%), Gaps = 4/78 (5%)
Query: 3 LGGGAPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVM 58
+G GAPQRGSAAATASMRRRK GGGASGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61
Query: 59 SIGFIAFVAVLHVVGKLY 76
SIGFIAFVAVLHV+GKLY
Sbjct: 62 SIGFIAFVAVLHVMGKLY 79
>UniRef100_Q9FKK1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9
[Arabidopsis thaliana]
Length = 109
Score = 97.1 bits (240), Expect = 1e-19
Identities = 53/84 (63%), Positives = 61/84 (72%), Gaps = 8/84 (9%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGG--ASGGAAGT------MLQFYTDDAPGLKISPNVVL 56
G A RGSAAATA MRRR+ GGG +SGG +G ML+FYTDDAPGLKISP VVL
Sbjct: 22 GLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFYTDDAPGLKISPTVVL 81
Query: 57 VMSIGFIAFVAVLHVVGKLYLREA 80
+MS+ FI FV LHV GKLYL ++
Sbjct: 82 IMSLCFIGFVTALHVFGKLYLHKS 105
>UniRef100_Q6XI06 Similar to Drosophila melanogaster Sec61beta [Drosophila yakuba]
Length = 100
Score = 61.2 bits (147), Expect = 6e-09
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
GGG+ + T++ R A GGA G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 29 GGGSTLKQRKTTTSTTAARSRAPGGAGTGG---MWRFYTDDSPGIKVGPVPVLVMSLLFI 85
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 86 ASVFMLHIWGK 96
>UniRef100_UPI0000432899 UPI0000432899 UniRef100 entry
Length = 93
Score = 60.8 bits (146), Expect = 8e-09
Identities = 33/71 (46%), Positives = 42/71 (58%), Gaps = 6/71 (8%)
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
GGG ++ A T S R R T G + M FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 25 GGGTVRQRKTATTTSTRSRNTGAG------SDEMWMFYTDDSPGIKVGPVPVLVMSLLFI 78
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 79 ASVFMLHIWGK 89
>UniRef100_UPI00002F99FD UPI00002F99FD UniRef100 entry
Length = 99
Score = 60.5 bits (145), Expect = 1e-08
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Query: 5 GGAPQRGSA--AATASMRRRK-----TAGGGASGGAAGT--MLQFYTDDAPGLKISPNVV 55
G +P + A AA +++R+RK T G S G+AGT M +FYT+D+PGLK+ P V
Sbjct: 17 GRSPSKTVAPRAAGSTVRQRKATSSGTRSGSRSTGSAGTGGMWRFYTEDSPGLKVGPVPV 76
Query: 56 LVMSIGFIAFVAVLHVVGK 74
LVMS+ FIA V +LH+ GK
Sbjct: 77 LVMSLLFIASVFMLHIWGK 95
>UniRef100_UPI0000361A47 UPI0000361A47 UniRef100 entry
Length = 97
Score = 60.1 bits (144), Expect = 1e-08
Identities = 35/68 (51%), Positives = 47/68 (68%), Gaps = 7/68 (10%)
Query: 14 AATASMRRRK-----TAGGGASGGAAGT--MLQFYTDDAPGLKISPNVVLVMSIGFIAFV 66
AA +++R+RK T G S G+AGT M +FYT+D+PGLK+ P VLVMS+ FIA V
Sbjct: 26 AAGSTVRQRKATSSGTRSGSRSTGSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASV 85
Query: 67 AVLHVVGK 74
+LH+ GK
Sbjct: 86 FMLHIWGK 93
>UniRef100_Q7SGN7 Predicted protein [Neurospora crassa]
Length = 114
Score = 60.1 bits (144), Expect = 1e-08
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 17 ASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKL 75
A+ R T GA GG++ TML+ YTD++PGLK+ P VVLV+S+ FI V LH++ K+
Sbjct: 51 ANARPNSTRAAGA-GGSSSTMLRLYTDESPGLKVDPVVVLVLSLVFIFSVVALHIIAKI 108
>UniRef100_UPI000023DC33 UPI000023DC33 UniRef100 entry
Length = 113
Score = 59.7 bits (143), Expect = 2e-08
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 17 ASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKL 75
A+ R T GA GG++ TML+ YTD++PGLK+ P VVLV+S+ FI V LH++ K+
Sbjct: 50 ANARPSSTRAAGA-GGSSSTMLRLYTDESPGLKVDPVVVLVLSLVFIFSVVALHIIAKI 107
>UniRef100_Q8AVT7 Sec61beta-prov protein [Xenopus laevis]
Length = 96
Score = 59.7 bits (143), Expect = 2e-08
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 1 MALGGGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISP 52
+A G +P + A TA ++R+RK A G + G M +FYT+D+PGLK+ P
Sbjct: 11 VAASGRSPSKAVAPRTAGSTVRQRKNASSSTRSAGRTTSAGTGGMWRFYTEDSPGLKVGP 70
Query: 53 NVVLVMSIGFIAFVAVLHVVGK 74
VLVMS+ FIA V +LH+ GK
Sbjct: 71 VPVLVMSLLFIASVFMLHIWGK 92
>UniRef100_Q9HFC7 Protein transport protein SEC61 beta subunit [Yarrowia
lipolytica]
Length = 91
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 15 ATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGK 74
A AS R T GA GG++ TML+ YTD++ GLK+ P VV+V+S+GFI V LH++ K
Sbjct: 26 AKASQRPTSTRSVGA-GGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 84
Query: 75 L 75
+
Sbjct: 85 V 85
>UniRef100_UPI00003ABDD8 UPI00003ABDD8 UniRef100 entry
Length = 104
Score = 58.9 bits (141), Expect = 3e-08
Identities = 35/78 (44%), Positives = 49/78 (61%), Gaps = 8/78 (10%)
Query: 5 GGAPQRGSA--AATASMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G +P + A AA +++R+RK A G A+ G M +FYT+D+PGLK+ P VL
Sbjct: 23 GRSPSKAVAPRAAGSTVRQRKNASCGTRSAGRATSTGTGGMWRFYTEDSPGLKVGPVPVL 82
Query: 57 VMSIGFIAFVAVLHVVGK 74
VMS+ FIA V +LH+ GK
Sbjct: 83 VMSLLFIASVFMLHIWGK 100
>UniRef100_Q6DGH3 Zgc:92922 [Brachydanio rerio]
Length = 97
Score = 58.9 bits (141), Expect = 3e-08
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 14 AATASMRRRKTAGGGASGG----AAGT--MLQFYTDDAPGLKISPNVVLVMSIGFIAFVA 67
A T++ +R+ T+ SGG +AGT M +FYT+D+PGLK+ P VLVMS+ FIA V
Sbjct: 27 AGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSPGLKVGPVPVLVMSLLFIASVF 86
Query: 68 VLHVVGK 74
+LH+ GK
Sbjct: 87 MLHIWGK 93
>UniRef100_Q7PPC9 ENSANGP00000022309 [Anopheles gambiae str. PEST]
Length = 106
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/71 (43%), Positives = 47/71 (65%), Gaps = 6/71 (8%)
Query: 10 RGSAAATASMRRRKT------AGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
R +A ++++++RKT A +G +G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 32 RAAAGGSSTLKQRKTTTTATAARNRNTGTGSGGMWRFYTDDSPGIKVGPVPVLVMSLLFI 91
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 92 ASVFMLHIWGK 102
>UniRef100_Q7PN12 ENSANGP00000014901 [Anopheles gambiae str. PEST]
Length = 106
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/71 (43%), Positives = 47/71 (65%), Gaps = 6/71 (8%)
Query: 10 RGSAAATASMRRRKT------AGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFI 63
R +A ++++++RKT A +G +G M +FYTDD+PG+K+ P VLVMS+ FI
Sbjct: 32 RAAAGGSSTLKQRKTTTTATAARNRNTGTGSGGMWRFYTDDSPGIKVGPVPVLVMSLLFI 91
Query: 64 AFVAVLHVVGK 74
A V +LH+ GK
Sbjct: 92 ASVFMLHIWGK 102
>UniRef100_Q95XS2 Hypothetical protein Y38F2AR.9 [Caenorhabditis elegans]
Length = 81
Score = 58.9 bits (141), Expect = 3e-08
Identities = 35/70 (50%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIA 64
GG QR AA A R R +GG G + +FYT+D+ GLKI P VLVMS+ FIA
Sbjct: 13 GGVRQRKGGAAAAPARAR-------AGGNNGGLWRFYTEDSTGLKIGPVPVLVMSLVFIA 65
Query: 65 FVAVLHVVGK 74
V VLH+ GK
Sbjct: 66 SVFVLHIWGK 75
>UniRef100_UPI00001C91F7 UPI00001C91F7 UniRef100 entry
Length = 96
Score = 58.2 bits (139), Expect = 5e-08
Identities = 34/78 (43%), Positives = 47/78 (59%), Gaps = 8/78 (10%)
Query: 5 GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G +P + AA A ++R+RK A G + G M +FYT+D+PGLK+ P VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74
Query: 57 VMSIGFIAFVAVLHVVGK 74
VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92
>UniRef100_Q9CQS8 Protein transport protein SEC61 beta subunit [Mus musculus]
Length = 95
Score = 58.2 bits (139), Expect = 5e-08
Identities = 34/78 (43%), Positives = 47/78 (59%), Gaps = 8/78 (10%)
Query: 5 GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G +P + AA A ++R+RK A G + G M +FYT+D+PGLK+ P VL
Sbjct: 14 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 73
Query: 57 VMSIGFIAFVAVLHVVGK 74
VMS+ FIA V +LH+ GK
Sbjct: 74 VMSLLFIAAVFMLHIWGK 91
>UniRef100_P60468 Protein transport protein SEC61 beta subunit [Homo sapiens]
Length = 95
Score = 58.2 bits (139), Expect = 5e-08
Identities = 34/78 (43%), Positives = 47/78 (59%), Gaps = 8/78 (10%)
Query: 5 GGAPQRGSAAATA--SMRRRKTAG------GGASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G +P + AA A ++R+RK A G + G M +FYT+D+PGLK+ P VL
Sbjct: 14 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 73
Query: 57 VMSIGFIAFVAVLHVVGK 74
VMS+ FIA V +LH+ GK
Sbjct: 74 VMSLLFIASVFMLHIWGK 91
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.321 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,571,082
Number of Sequences: 2790947
Number of extensions: 4526099
Number of successful extensions: 36834
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 36701
Number of HSP's gapped (non-prelim): 119
length of query: 80
length of database: 848,049,833
effective HSP length: 56
effective length of query: 24
effective length of database: 691,756,801
effective search space: 16602163224
effective search space used: 16602163224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC147537.6