BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.13 + phase: 0 /pseudo
         (575 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_O23277 Hypothetical protein dl3130w [Arabidopsis thali...   169  2e-40
UniRef100_Q7XS73 OSJNBa0020I02.9 protein [Oryza sativa]               135  2e-30
UniRef100_Q46442 Virulence plasmid protein pGP6-D [Chlamydia mur...    39  0.32
UniRef100_UPI0000310A62 UPI0000310A62 UniRef100 entry                  37  1.2
UniRef100_Q9IEB6 Gp41 [Human immunodeficiency virus 1]                 37  1.6
UniRef100_UPI00002CAE5B UPI00002CAE5B UniRef100 entry                  35  6.0
UniRef100_UPI000028760B UPI000028760B UniRef100 entry                  35  6.0
UniRef100_Q6MTL4 Hypothetical transmembrane protein [Mycoplasma ...    35  6.0
UniRef100_UPI0000329C30 UPI0000329C30 UniRef100 entry                  35  7.8

>UniRef100_O23277 Hypothetical protein dl3130w [Arabidopsis thaliana]
          Length = 1268

 Score =  169 bits (429), Expect = 2e-40
 Identities = 98/197 (49%), Positives = 129/197 (64%), Gaps = 9/197 (4%)

Query: 38  RGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINSLCHQILK 97
           R L N  YQI YS EAE IIF L+N  EWDL S  IH  SLKWLFQQE+I  SL +QI K
Sbjct: 661 RSLQNERYQISYSLEAERIIFHLLNEYEWDLGSINIHLESLKWLFQQESISKSLIYQIQK 720

Query: 98  FCRNNNLEGDDM--IIGNSNQTVNVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEHDI 155
             R NNL G+++  + G+  Q       A+L+S  DNY A L + LL QLAE+E QE+D+
Sbjct: 721 ISR-NNLIGNEVHNVYGDGRQRSLTYWFAKLISEGDNYAATLLVNLLTQLAEKEEQENDV 779

Query: 156 ISVLNLMATMIHICPAASDQLSLHGIGTTIRTCC--FSTA----TFMSILVLVFNTLSSV 209
           IS+LNLM T++ I P AS+ LS++GIG+ I      FS +    +F ++L+LVFN L+SV
Sbjct: 780 ISILNLMNTIVSIFPTASNNLSMNGIGSVIHRLVSGFSNSSLGTSFRTLLLLVFNILTSV 839

Query: 210 HPKTLSTDQSWVAVTME 226
            P  L  D+SW AV+++
Sbjct: 840 QPAVLMIDESWYAVSIK 856



 Score = 37.7 bits (86), Expect = 0.92
 Identities = 23/83 (27%), Positives = 44/83 (52%), Gaps = 2/83 (2%)

Query: 484  LTS*VLSKLQL*VKCCRKQMYTNNAQDGLPSEPIKKVLATSYDLGDVCWFLIDLMSPDTL 543
            L S  ++KL    + CRKQM+ N  +D    E +++ + + +D  + C +L+ LM  ++ 
Sbjct: 1159 LNSQQVTKLDRAFQECRKQMHRNGTRDETVEEQVQRKIPSIHDHSEFCNYLVHLMVSNSF 1218

Query: 544  --DMDSWGIHMDGKRLLEEIELF 564
                +S       K++L+E+E F
Sbjct: 1219 GHPSESETYTQKKKQILDEMEQF 1241


>UniRef100_Q7XS73 OSJNBa0020I02.9 protein [Oryza sativa]
          Length = 1176

 Score =  135 bits (341), Expect = 2e-30
 Identities = 89/248 (35%), Positives = 144/248 (57%), Gaps = 12/248 (4%)

Query: 3   LASLEQYVLLNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLIN 62
           LAS+EQY+LLN +   +    SL +T LV+LY+ +RG+ +  + I +S EAE+ +F  + 
Sbjct: 557 LASVEQYILLNGAKFPHEIPGSLMLTLLVHLYAFVRGI-SFRFGIPHSPEAEKTLFHAMT 615

Query: 63  NGEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVNVQT 122
           + EWDLL  R+H ++LKWLFQ E ++  L   +L FC+    E   +++ +S Q V++Q 
Sbjct: 616 HKEWDLLLIRVHLIALKWLFQNEELMEPLSFHLLNFCK-FFCEDRTVMLSSSTQLVDIQL 674

Query: 123 LAELVSSEDNYGARLFICLLAQLAEEEGQEHDIISVLNLMATMIHICPAASDQLSLHGI- 181
           +AELV S +   + L + LL+Q+ +E   E +++SV+N++  ++   P  SDQ    GI 
Sbjct: 675 IAELVYSGETCISSLLVSLLSQMIKESA-EDEVLSVVNVITEILVSFPCTSDQFVSCGIV 733

Query: 182 ---GTTIRTCCFSTATFMSILVLVFNTLSSVHPKTLS-TDQSWVAVTMESRKSLRHWHSF 237
              G+   + C S    +  L L+FN L S    T +  D +W+A+TM   K L  ++S 
Sbjct: 734 DALGSIYLSLCSSRIKSVCSL-LIFNILHSASAMTFTCDDDAWLALTM---KLLDCFNSS 789

Query: 238 LDFTSFHQ 245
           L +TS  Q
Sbjct: 790 LAYTSSEQ 797


>UniRef100_Q46442 Virulence plasmid protein pGP6-D [Chlamydia muridarum]
          Length = 246

 Score = 39.3 bits (90), Expect = 0.32
 Identities = 28/96 (29%), Positives = 48/96 (49%), Gaps = 5/96 (5%)

Query: 119 NVQTLAELVSSEDNYGA-RLFICLLAQLAEEEGQEHDIISVLNLMATMIHICPAASDQL- 176
           +++  +  ++SE+N    RLF+     L++EE  + D++SV  L+ + I         L 
Sbjct: 29  SIEMFSTSLNSEENQSLDRLFLSETQNLSDEESYQEDVLSV-KLLTSQIKAIQKQHVLLL 87

Query: 177 --SLHGIGTTIRTCCFSTATFMSILVLVFNTLSSVH 210
              ++     +   CFS+ TF S L LVF T SS +
Sbjct: 88  GEKIYNARKILSKSCFSSTTFSSWLDLVFRTKSSAY 123


>UniRef100_UPI0000310A62 UPI0000310A62 UniRef100 entry
          Length = 265

 Score = 37.4 bits (85), Expect = 1.2
 Identities = 35/124 (28%), Positives = 56/124 (44%), Gaps = 18/124 (14%)

Query: 12  LNSSDSHNWTTDSLTVTRLVNLYSLLR--------GLGNMNYQIHYSREAEEIIFQLINN 63
           L  S   N+  D+ T+ ++V+L SL          G GN+   I   R      F LI  
Sbjct: 4   LKKSLGQNFLRDNNTLNKIVSLESLSNQNILEIGPGSGNLTNLIFKQRPKS---FYLIEK 60

Query: 64  GEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVNVQTL 123
            +      R + + LK  +++EN +N L   IL F  N+  E D ++ GN    ++ Q L
Sbjct: 61  DK------RFYEI-LKEKYKRENSLNILNKDILDFNLNDLKEKDVIVFGNLPYNISTQIL 113

Query: 124 AELV 127
           A+ +
Sbjct: 114 AKFI 117


>UniRef100_Q9IEB6 Gp41 [Human immunodeficiency virus 1]
          Length = 219

 Score = 37.0 bits (84), Expect = 1.6
 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 19/135 (14%)

Query: 31  VNLYSLLRGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINS 90
           V  ++L++G+      +  + +A++   QL+    W +   R   ++L+ L Q + ++NS
Sbjct: 4   VRTHTLIKGIVQQQDNLLRAIQAQQ---QLLRLSVWGIRQLRARLLALETLIQNQQLLNS 60

Query: 91  -------LCHQILKFCRNNNLEGDDMIIGNSNQTVNVQTLAELVSSEDNYGARLFICLLA 143
                  +C+  +K+  NN  +GD+ I GN        T  E     DN  + +F  +L 
Sbjct: 61  WGCKGRLVCYTSVKW--NNTWKGDEYIWGN-------LTWQEWDQQIDNVSSIIFDEILR 111

Query: 144 QLAEEEGQEHDIISV 158
              ++E  E  ++ +
Sbjct: 112 AQVQQEENERKLLEL 126


>UniRef100_UPI00002CAE5B UPI00002CAE5B UniRef100 entry
          Length = 265

 Score = 35.0 bits (79), Expect = 6.0
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 35/163 (21%)

Query: 3   LASLEQYVLLNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLIN 62
           +A LE  VL + S +  +  D L V R+    S L   G        + E +E+I  ++N
Sbjct: 6   IADLENRVLRHVSVA--FRDDPLRVLRVARFMSKLNSFG-----FRIADETKELISDIVN 58

Query: 63  NGEWDLL---------SARIHTVSLKWLFQ---QENIINSLCHQILKFCRNNNLEGDDMI 110
           +GE D L            +HT S    F+   + N IN +           +L G D +
Sbjct: 59  SGELDYLVPERVWLETEKALHTESFDLYFKTLCEFNAINGI---------YPDLNGIDQV 109

Query: 111 IGNSNQTVNVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEH 153
           I NS+ T       EL        A LF C +  L +E   EH
Sbjct: 110 IANSSLTAYKNVSPELKL------ASLF-CAMDTLTDENLVEH 145


>UniRef100_UPI000028760B UPI000028760B UniRef100 entry
          Length = 311

 Score = 35.0 bits (79), Expect = 6.0
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 39/165 (23%)

Query: 3   LASLEQYVLLNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLIN 62
           +A LE  VL + S +  +  D L V R+    S L   G        + E +E+I  ++N
Sbjct: 52  IADLENRVLRHVSVA--FRDDPLRVLRVARFMSKLNSFG-----FRIADETKELISDIVN 104

Query: 63  NGEWDLL---------SARIHTVSLKWLFQ---QENIINSLCHQILKFCRNNNLEGDDMI 110
           +GE D L            +HT S    F+     N IN +           +L G D I
Sbjct: 105 SGELDYLVPERVWLETEKALHTESFDLYFKTLCDFNAINDI---------YPDLNGIDQI 155

Query: 111 IGNSNQTV--NVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEH 153
           I NS+ T   NV    +L S          +C +  L +E   EH
Sbjct: 156 IANSSLTAYKNVSPELKLAS---------LLCAMDTLTDENLVEH 191


>UniRef100_Q6MTL4 Hypothetical transmembrane protein [Mycoplasma mycoides]
          Length = 275

 Score = 35.0 bits (79), Expect = 6.0
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 19  NWTTDSLTVTRLVNLYSLLRGLGNMNYQIHYSREAEEIIFQLINNGEWDLLSARIHTVSL 78
           N+ + SL +   VN Y  +  +     ++HY+ E  +++   +   E+D  +ARI+ + +
Sbjct: 191 NYLSFSLIICLFVNYYISI--IIKNKIELHYNDEVSKLVSSALEMYEYDFKAARIYALGI 248

Query: 79  KWLF 82
           KW +
Sbjct: 249 KWTY 252


>UniRef100_UPI0000329C30 UPI0000329C30 UniRef100 entry
          Length = 169

 Score = 34.7 bits (78), Expect = 7.8
 Identities = 20/81 (24%), Positives = 41/81 (49%), Gaps = 1/81 (1%)

Query: 108 DMIIGNSNQTVNV-QTLAELVSSEDNYGARLFICLLAQLAEEEGQEHDIISVLNLMATMI 166
           ++ + N ++T+ + QT+  +     N   +   C++ + +E      D +S  N+  T +
Sbjct: 83  EISVSNISKTIEIFQTIPLIKKISTNQNIKSINCVIEKASENIPHIIDKLSKSNIEITKL 142

Query: 167 HICPAASDQLSLHGIGTTIRT 187
           +I PA  D + LH  G +I+T
Sbjct: 143 NISPANLDDVFLHLTGNSIKT 163


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.349    0.152    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 827,897,991
Number of Sequences: 2790947
Number of extensions: 30092312
Number of successful extensions: 135652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 135643
Number of HSP's gapped (non-prelim): 11
length of query: 575
length of database: 848,049,833
effective HSP length: 133
effective length of query: 442
effective length of database: 476,853,882
effective search space: 210769415844
effective search space used: 210769415844
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 78 (34.7 bits)