BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.5 + phase: 0 /pseudo
(676 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9FGZ3 Similarity to unknown protein [Arabidopsis thal... 265 4e-69
UniRef100_Q9FYW6 BAC19.10 [Lycopersicon esculentum] 159 3e-37
UniRef100_Q86JI9 Similar to Mus musculus (Mouse). N/A [Dictyoste... 111 8e-23
UniRef100_UPI0000363FE4 UPI0000363FE4 UniRef100 entry 91 9e-17
UniRef100_Q9NVU0-2 Splice isoform 2 of Q9NVU0 [Homo sapiens] 89 6e-16
UniRef100_Q9NVU0-3 Splice isoform 3 of Q9NVU0 [Homo sapiens] 89 6e-16
UniRef100_Q9NVU0 DNA-directed RNA polymerases III 80 kDa polypep... 89 6e-16
UniRef100_Q9CZT4 DNA-directed RNA polymerases III 80 kDa polypep... 88 9e-16
UniRef100_Q66JI8 Polr3e-prov protein [Xenopus tropicalis] 87 1e-15
UniRef100_UPI00001CE60B UPI00001CE60B UniRef100 entry 84 1e-14
UniRef100_Q7ZUL6 RNA polymerase III 80 kDa subunit RPC5 [Brachyd... 84 1e-14
UniRef100_UPI0000498B8C UPI0000498B8C UniRef100 entry 80 2e-13
UniRef100_Q6IP64 MGC78924 protein [Xenopus laevis] 78 1e-12
UniRef100_O74883 Rpc37 protein [Schizosaccharomyces pombe] 72 7e-11
UniRef100_UPI0000293328 UPI0000293328 UniRef100 entry 67 1e-09
UniRef100_UPI00003AAE47 UPI00003AAE47 UniRef100 entry 66 3e-09
UniRef100_Q9CZT4-2 Splice isoform 2 of Q9CZT4 [Mus musculus] 64 2e-08
UniRef100_Q6C8I0 Yarrowia lipolytica chromosome D of strain CLIB... 58 1e-06
UniRef100_UPI00003AAE48 UPI00003AAE48 UniRef100 entry 56 3e-06
UniRef100_Q6CK31 Kluyveromyces lactis strain NRRL Y-1140 chromos... 52 8e-05
>UniRef100_Q9FGZ3 Similarity to unknown protein [Arabidopsis thaliana]
Length = 689
Score = 265 bits (676), Expect = 4e-69
Identities = 163/374 (43%), Positives = 224/374 (59%), Gaps = 28/374 (7%)
Query: 1 MDFDDLDAPVK-PRVSRFAP-KSSKFKPK-KEEPSLVPKSEPPPLAS----AKTEPQEID 53
MDFDD D P + + RFAP ++ K KPK K EP+ +PPP + +KTE
Sbjct: 1 MDFDDDDKPKEVTKTRRFAPGRAGKSKPKPKPEPTADKPVQPPPQSQTESVSKTEHDVDA 60
Query: 54 LTAPTPVKHEP-NASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPMDEE------- 105
T V+ E N SVK + +SK++ + ++ TE ++ +++ P+ EE
Sbjct: 61 KFVGTKVETEVCNGSVKMEIDSKVD-----KEPEIMETELMEEDQQL-PLQEEKEEEEEE 114
Query: 106 -DTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSI 164
D VVREIDV+F PSID +T+LYV+QYPLRPSWRPY++DE+CEEVR+ P TS+VE+DLS+
Sbjct: 115 DDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSM 174
Query: 165 DLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRH 224
D+ S N + L TKQTL TTWK PP AVG+L GDKLHL+P+HAV QLRPS
Sbjct: 175 DVHSKNYDSNFG--LNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPS-- 230
Query: 225 YLDSGGSEKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCKSDISS 284
+ S S+KK + + T + K S +QK + + WV L+YHG +S+ S
Sbjct: 231 -MQSLSSDKKKKQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYCS 289
Query: 285 RYFQQMVTHESSPINFEMSTYDYIATLCPGVSS-NTLAKGPSKRYLLSLPVEKRLQTLLI 343
RY M+ + +S I+F MS YI LC G SS N+ +K KR LLSLP+++R+Q LL
Sbjct: 290 RYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLLC 349
Query: 344 ESNNRTLYDRALHF 357
E + Y H+
Sbjct: 350 EGSPLIRYSVLKHY 363
Score = 96.7 bits (239), Expect = 2e-18
Identities = 53/114 (46%), Positives = 73/114 (63%), Gaps = 4/114 (3%)
Query: 563 VCSFQLICQELRGLALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVL 622
VC ++ ICQ LR LA++ + PK S M+V+ A ++D Q EL+ ++ VA +IHG YV
Sbjct: 558 VCRYETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVS 617
Query: 623 KSAQNDP----FRDVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKV 672
S+ + P R+VVI +L GS P KL KAE+ A R KL R++ NNEYIKV
Sbjct: 618 ISSPDHPEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKV 671
>UniRef100_Q9FYW6 BAC19.10 [Lycopersicon esculentum]
Length = 683
Score = 159 bits (402), Expect = 3e-37
Identities = 97/257 (37%), Positives = 144/257 (55%), Gaps = 29/257 (11%)
Query: 5 DLDAPVK--PRVSRFAPKSSKFKPKKEEPSLVPKSEPPPL---ASAKTEPQEIDLTAPTP 59
D D P K R +RFAPK+SK KP+ PKSE PL + T+ +E P
Sbjct: 4 DFDGPSKVPSRQARFAPKNSKLKPQ-------PKSETLPLKVDSEIPTKKEEFVSQPPLR 56
Query: 60 VKHEPNASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPMDEEDTVVREIDVYFSPS 119
N K + + + G+ ++ E S ++D VVRE+DV+ +PS
Sbjct: 57 DHIVKNGEAKVEDDVLLNGETTGNDLAEEQVGMETDS-------DQDEVVREVDVWLTPS 109
Query: 120 IDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLESYNVEKATADKL 179
+ + YV+QYPLR WRPY LDE+C++VRL+P ++E+EVDL+ID +S N ++ +
Sbjct: 110 AN---EFYVLQYPLRSEWRPYGLDERCQDVRLRPSSAEMEVDLAIDFDSKNFDRDSVHAA 166
Query: 180 KYTKQTLSTTWKPPPANGC---AVGLLMGDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNV 236
KQ +ST W P++ C AVG+ +GDK HL+P+HA+VQLRPS + SE KN+
Sbjct: 167 TIKKQIVSTKW--VPSSTCADFAVGIFIGDKFHLNPVHAIVQLRPSLQHRKE--SELKNL 222
Query: 237 ATSNNQNKQTTPSMEQK 253
TSN++ +++K
Sbjct: 223 TTSNDEKSCENEDVKEK 239
Score = 73.6 bits (179), Expect = 2e-11
Identities = 40/101 (39%), Positives = 61/101 (59%), Gaps = 4/101 (3%)
Query: 576 LALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDP----FR 631
L + + M + K + A D + E++A++ ++A +IHG YVLKS+ ++P R
Sbjct: 527 LQICELMEKEDPMKAIISPAGISDALRKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALR 586
Query: 632 DVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKV 672
VVID+ G N KLKKA I+EAA+ +LGRDV E+ K+
Sbjct: 587 KVVIDLFMAEGSNAKLKKASIVEAAKLQLGRDVTTVEFQKL 627
>UniRef100_Q86JI9 Similar to Mus musculus (Mouse). N/A [Dictyostelium discoideum]
Length = 657
Score = 111 bits (277), Expect = 8e-23
Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 67/348 (19%)
Query: 48 EPQEIDLTAPTPVKHEPNASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPM----- 102
EP++ID+T T P + T + ++ +E+ E + E P
Sbjct: 10 EPKDIDMTETTK---SPQKTTTTTTTTTTTTNTNTDKATIELDELDEYEEEKIPPPPKTK 66
Query: 103 ----------DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLK 152
+EED V+ EI VY S S+ + LY+ QYPLR WRPYD+ + EE+R+K
Sbjct: 67 VIINGVEEEEEEEDYVIHEIPVYLSQSLSD--YLYLFQYPLRQPWRPYDMSK-LEELRIK 123
Query: 153 PGTSEVEVDLSIDLES--YNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHL 210
P +VE+DLSID +S YN + T K TK TLS+T N A+GL+ ++LHL
Sbjct: 124 PKQQKVEMDLSIDPDSDNYNPDAQT----KTTKYTLSSTTVSHRTN-YAIGLMKSNELHL 178
Query: 211 HPIHAVVQLRPSRHYLDSGGSE-----KKNVATSNNQNKQT------------------T 247
P+ +++QLRP +Y D E K++ + Q++++
Sbjct: 179 TPLQSIIQLRPQFNYFDDKWQEEKLRKKQDTKDDDEQDEESGNGGGGGGNGQSIDPLNKI 238
Query: 248 PSMEQKSDGA--------PSIEQKSDSNQCWVPL-----EYHGCKSDISSRYFQQMVTHE 294
SM+ K GA P+I ++ ++ + W+ + E+ G ++ ++ +
Sbjct: 239 ASMQFKKAGAKVSAANQQPNIIKQIENEEQWIKVNLVDDEFDG---ELIKQFEKLQCEDI 295
Query: 295 SSPINFEMSTYDYIATLCPGVSSNTLAKGPSKRYLLSLPVEKRLQTLL 342
+ I ++++ Y LCP V ++K +SL ++ L
Sbjct: 296 YTDIKYDLNESQYFDMLCPRVPDEWVSKAAYIHETVSLETVHKMSLAL 343
>UniRef100_UPI0000363FE4 UPI0000363FE4 UniRef100 entry
Length = 688
Score = 91.3 bits (225), Expect = 9e-17
Identities = 75/286 (26%), Positives = 126/286 (43%), Gaps = 49/286 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
DE+D ++ EIDVY + S+ + KLY+ QYP+RPS YD D ++KP VE+++
Sbjct: 5 DEDDPIIEEIDVYLAKSLAD--KLYLFQYPVRPSSMTYD-DVNHLSAKIKPKQQRVELEM 61
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID S NV+ A D+ KQT S+ + A +
Sbjct: 62 AIDATSPNYCRSKGEQIALNVDGAAYDETNSYSTKMMDKQTFSSIQATTNTSRYAAAVFH 121
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSNNQNKQTTPSMEQKSD------GAP 258
+LH+ P+ ++Q+RPS YLD S+ + +N + E+++ P
Sbjct: 122 KGELHITPLTGILQMRPSFSYLDKADSKTREREAANEGGDSSQDEAEEEAKAITVRFSRP 181
Query: 259 SIE-------------QKSDSNQCWVPLEYHGCK---SDISSRYFQQMVTHESSPINFEM 302
E QK + + W+ L+YHG K S+ +Y S
Sbjct: 182 ESEQARQRRIQSYEFLQKKQAEEPWIHLQYHGVKDGRSEHERQYLFCQSADASENSELVK 241
Query: 303 STYDYIATLCPGVSSNTLAK--GPSK----RYLLSLPVEKRLQTLL 342
+ +Y++ L P ++ + K GPS L +LP+ +++TL+
Sbjct: 242 TPKEYLSMLMPPLAEEKVVKPVGPSNVLSMAQLRTLPLVDQVKTLM 287
>UniRef100_Q9NVU0-2 Splice isoform 2 of Q9NVU0 [Homo sapiens]
Length = 666
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>UniRef100_Q9NVU0-3 Splice isoform 3 of Q9NVU0 [Homo sapiens]
Length = 654
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>UniRef100_Q9NVU0 DNA-directed RNA polymerases III 80 kDa polypeptide [Homo sapiens]
Length = 708
Score = 88.6 bits (218), Expect = 6e-16
Identities = 80/268 (29%), Positives = 121/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D VV+EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVVQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ + A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>UniRef100_Q9CZT4 DNA-directed RNA polymerases III 80 kDa polypeptide [Mus musculus]
Length = 710
Score = 87.8 bits (216), Expect = 9e-16
Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 57/268 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D V++EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPVIQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A AD+ KQT ++ A L
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G + S Q ++ SS
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSS--------- 231
Query: 306 DYIATLCPGVSSNTLAKGPSKRYLLSLP 333
GV + L K PS+ ++ +P
Sbjct: 232 --------GVENTELVKSPSEYLMMLMP 251
>UniRef100_Q66JI8 Polr3e-prov protein [Xenopus tropicalis]
Length = 547
Score = 87.4 bits (215), Expect = 1e-15
Identities = 73/273 (26%), Positives = 118/273 (42%), Gaps = 49/273 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+++D VV+EIDV+ + S+ KLY++QYP+RP+ YD D R+KP ++E+++
Sbjct: 4 EDDDPVVQEIDVFLAKSLSE--KLYLLQYPIRPASMTYD-DVTHVSTRIKPKEQKMEMEI 60
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+++ ES NV+ A+ D KQT S+ A L
Sbjct: 61 AMNTESPNYCCSKGEQIALNVDGASNDDTSTYSTKLMDKQTFSSIQAESNTTRYAAALYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSNNQNKQTTPSMEQKSDGAPSIE--- 261
++HL P+H ++Q+RPS YLD ++ K +N PS ++ D +
Sbjct: 121 KGEIHLTPLHGILQMRPSFTYLDKADTKFKEREAANEGG---DPSQDEAEDDVKQVNVRF 177
Query: 262 -------------------QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI-NFE 301
QK + + WV L Y G K S Q ++ +S N E
Sbjct: 178 SRPESEKAKQRRVQSYEFLQKKQAEENWVHLHYSGVKDSRSEHERQYLLCQNTSVADNME 237
Query: 302 M--STYDYIATLCPGVSSNTLAKGPSKRYLLSL 332
+ S DY++ L P K + +LSL
Sbjct: 238 LTKSPRDYLSMLMPSNVEEEKKKPVAPSNVLSL 270
>UniRef100_UPI00001CE60B UPI00001CE60B UniRef100 entry
Length = 899
Score = 84.3 bits (207), Expect = 1e-14
Identities = 78/270 (28%), Positives = 120/270 (43%), Gaps = 42/270 (15%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D V++EIDVY + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 176 EEDDPVIQEIDVYLAKSLAE--KLYLFQYPVRPASMTYD-DIPHLSAKIKPKQQKVELEM 232
Query: 163 SIDLES------------YNVEKATADKLK------YTKQTLSTTWKPPPANGCAVGLLM 204
+ID + NV+ A D+ KQT ++ A L
Sbjct: 233 AIDTLNPNYCRSKGEQIALNVDGACTDETSTYSSKLMDKQTFCSSQTTSNTARYAAALYR 292
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+H ++QLRPS YLD + E N A ++Q+ KQ T P
Sbjct: 293 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRP 352
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCK--SDISSRYFQQMVTHESSPINFEMS 303
EQ + S E QK + + WV L Y+G + S I + + S E
Sbjct: 353 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRPWSRIVAEWEVTCPAFSSQDSRSEHE 412
Query: 304 TYDYIATLCPGVSSNTLAKGPSKRYLLSLP 333
+ GV + L K PS+ ++ +P
Sbjct: 413 RQYLLCQGSSGVENTELVKSPSEYLMMLMP 442
>UniRef100_Q7ZUL6 RNA polymerase III 80 kDa subunit RPC5 [Brachydanio rerio]
Length = 696
Score = 84.0 bits (206), Expect = 1e-14
Identities = 80/288 (27%), Positives = 134/288 (45%), Gaps = 53/288 (18%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
D++D +++EIDVY + S+ KLY+ QYP+RP Y+ ++KP +VE+++
Sbjct: 5 DDDDPIIQEIDVYLARSLVE--KLYLFQYPVRPGSMSYNNVTHLG-AKIKPKQQKVELEV 61
Query: 163 SIDLESYNVEKATADKLK-------------YT-----KQTLSTTWKPPPANGCAVGLLM 204
++D S N ++ +++ YT KQT S+ + A +
Sbjct: 62 AMDTMSPNYSRSKGEQIALNVDGMSSEDSNVYTTKMMDKQTFSSIQATTNTSRYAAAVFH 121
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----P 248
+LHL P+ ++Q+RPS YLD + E N A ++Q+ KQ T P
Sbjct: 122 KGELHLTPLQGILQMRPSFTYLDKADTKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 181
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSR-----YFQQMVTHESSPINF 300
EQ + S E QK + + WV L YH K S Y Q M T E++ +
Sbjct: 182 ESEQARQRRIQSYEFLQKKQAEEPWVHLHYHAIKDSRSEHERQYLYCQAMDTTENTEL-- 239
Query: 301 EMSTYDYIATLCPGVSSNTLAK--GPSK----RYLLSLPVEKRLQTLL 342
+ +Y++ L P ++ + K GPS L +LP+ +++TL+
Sbjct: 240 VKTPREYLSMLMPPLAEEKVVKPVGPSNVLSMAQLRTLPLGDQVKTLM 287
>UniRef100_UPI0000498B8C UPI0000498B8C UniRef100 entry
Length = 549
Score = 80.5 bits (197), Expect = 2e-13
Identities = 63/219 (28%), Positives = 100/219 (44%), Gaps = 16/219 (7%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
DE D V E+ VY S N+ +L++MQYP R +WRP+DL Q +EVR KP +E+D+
Sbjct: 6 DENDPVELEMPVYLCDS--NEQELFLMQYPTRLAWRPFDL-SQVKEVRYKPLQKGIEMDV 62
Query: 163 SIDLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDK----LHLHPIHAVVQ 218
++ + + E K T QT T AN AVG + K L L P+ + Q
Sbjct: 63 KLEQDFIDEESI----YKITSQTYKGTVTENKAN-YAVGFVKEVKNQPTLVLFPVSTIAQ 117
Query: 219 LRPSRHYLDSG----GSEKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLE 274
+RP Y+D EK T++ + K+ S + K D + + ++
Sbjct: 118 MRPQLQYIDEDIIDEKPEKAEGMTADGKKKKIAVSAAPTKKQKDLEQLKKDEAEEAIKMK 177
Query: 275 YHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCP 313
+ S+ + ++M+ I +E +YI L P
Sbjct: 178 LNDTTSNETIEVVERMIKSSKGKIEWENDVKEYINKLAP 216
>UniRef100_Q6IP64 MGC78924 protein [Xenopus laevis]
Length = 701
Score = 77.8 bits (190), Expect = 1e-12
Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 43/251 (17%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+++D +++EIDV+ + S+ KLY+ QYP+RP+ YD R+KP +VE+++
Sbjct: 4 EDDDPIIQEIDVFLAKSLSE--KLYLFQYPIRPASMTYDGVTHLS-ARIKPKQQKVEMEM 60
Query: 163 SIDLESYNVEKATADKLKYT------------------KQTLSTTWKPPPANGCAVGLLM 204
+I+ S N ++ +++ KQT ++ + AV
Sbjct: 61 AINTASPNYCRSKGEQIALNVDGTSNDETSTYSTKLMDKQTFTSIQAASNTSRYAVAFYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSNNQN-----------KQTT-----P 248
++H+ P++ ++Q+RPS YLD ++ K +N KQ T P
Sbjct: 121 KGEVHVTPLNGILQMRPSFTYLDKADTKFKEREAANEGGDSSQDEVEEDVKQVTVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPI-NFEM-- 302
EQ K A S E QK + + WV L Y K S Q ++ +S N E+
Sbjct: 181 ESEQAKQRRAQSYEFLQKKQAEETWVHLHYSSVKDSRSEHERQYLLCQNTSVADNMELVK 240
Query: 303 STYDYIATLCP 313
S+ +Y++ L P
Sbjct: 241 SSREYLSMLMP 251
>UniRef100_O74883 Rpc37 protein [Schizosaccharomyces pombe]
Length = 242
Score = 71.6 bits (174), Expect = 7e-11
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 11/152 (7%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCE---EVRLKPGTSEVE 159
+E+D VVR V+FSP + N+ L + Q+PLRP R Y D E +VR+KP T +E
Sbjct: 20 EEQDPVVRTYPVFFSPGLRNN--LLLNQFPLRPKNRTYS-DANGEAPIDVRVKPKTGWME 76
Query: 160 VDLSIDLESY-NVEKATA---DKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHA 215
VD+ I Y N +KA K QTLS + P N VGL+ + H+ P+
Sbjct: 77 VDVPIPTTKYYNEDKAMKYGNGKKPIQTQTLSGRLQKPRTN-LMVGLIRDGQFHIVPLRG 135
Query: 216 VVQLRPSRHYLDSGGSEKKNVATSNNQNKQTT 247
+ QLRPS +++ + K A +N + T+
Sbjct: 136 LTQLRPSMKHVNEYTQKLKAAAGPSNSSSGTS 167
>UniRef100_UPI0000293328 UPI0000293328 UniRef100 entry
Length = 750
Score = 67.4 bits (163), Expect = 1e-09
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 40/205 (19%)
Query: 112 IDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLESYNV 171
IDVY + S+ + KLY+ QYP+RPS YD D R+KP VE++++I+ S N
Sbjct: 1 IDVYLAKSLAD--KLYLFQYPVRPSSMTYD-DVSHLSARIKPKQQRVELEMAINAMSPNY 57
Query: 172 EKATADKLKYT------------------KQTLSTTWKPPPANGCAVGLLMGDKLHLHPI 213
++ +++ KQT S+ + A + +LH+ P+
Sbjct: 58 CRSKGEQIALNVDGTAYDETNTYSTKMMDKQTFSSIQATTNTSRYAAAVFHKGELHITPL 117
Query: 214 HAVVQLRPSRHYLDSGGSEKKNVATSNNQNKQTTPSMEQKSD------GAPSIE------ 261
++Q+RPS YLD + + +N + E+++ P E
Sbjct: 118 TGILQMRPSFSYLDKADNTTREREAANEGGDSSQDEAEEEAKAITVRFSRPESEQARQRR 177
Query: 262 -------QKSDSNQCWVPLEYHGCK 279
QK + + WV L+YH K
Sbjct: 178 IQSYEFLQKKQAEEPWVHLQYHSAK 202
>UniRef100_UPI00003AAE47 UPI00003AAE47 UniRef100 entry
Length = 693
Score = 66.2 bits (160), Expect = 3e-09
Identities = 70/269 (26%), Positives = 113/269 (41%), Gaps = 59/269 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDL 162
+E+D +++EIDV+ + S+ KLY+ QYP+RP+ YD D ++KP +VE+++
Sbjct: 4 EEDDPIIQEIDVFLARSLLE--KLYLFQYPIRPASMTYD-DVTHLSAKIKPKQQKVELEM 60
Query: 163 SIDLESYNV------------------EKATADKLKYTKQTLSTTWKPPPANGCAVGLLM 204
+ID + N E +T KQT ++ + A +
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGTCTDETSTYSSKLMDKQTFCSSQAASNVSRYAAAVYR 120
Query: 205 GDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATSN-----------NQNKQTT-----P 248
L P+ +V LRPS YLD ++ + +N + KQ T P
Sbjct: 121 KGDFVLLPLTSVKHLRPSFTYLDKADAKHREREAANEGGDSSQDEAEDDVKQITVRFSRP 180
Query: 249 SMEQ-KSDGAPSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTY 305
EQ + S E QK + + WV L Y+G K S HE
Sbjct: 181 ETEQARQRRVQSYEFLQKRQAEEHWVHLHYYGLKDSRSE--------HER---------- 222
Query: 306 DYIATLCPGVSSNT-LAKGPSKRYLLSLP 333
Y+ + G++ NT L K PS+ ++ +P
Sbjct: 223 QYLFSQGHGLAENTELIKSPSEYLMMLMP 251
>UniRef100_Q9CZT4-2 Splice isoform 2 of Q9CZT4 [Mus musculus]
Length = 684
Score = 63.5 bits (153), Expect = 2e-08
Identities = 71/254 (27%), Positives = 107/254 (41%), Gaps = 55/254 (21%)
Query: 103 DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLR---PSWRPYDLDEQCEEVRLKPGTSEVE 159
+E+D V++EIDVY + S+ KLY+ Q L + P + E++ L
Sbjct: 4 EEDDPVIQEIDVYLAKSLAE--KLYLFQVELEMAIDTLNPNYCRSKGEQIALN------- 54
Query: 160 VDLSIDLESYNVEKATADKLKY-TKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQ 218
VD + E+ DK + + QT S T + A L +LHL P+H ++Q
Sbjct: 55 VDGACADETSTYSSKLMDKQTFCSSQTTSNTAR------YAAALYRQGELHLTPLHGILQ 108
Query: 219 LRPSRHYLDSGGS-----EKKNVATSNNQN------KQTT-----PSMEQ-KSDGAPSIE 261
LRPS YLD + E N A ++Q+ KQ T P EQ + S E
Sbjct: 109 LRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRPESEQARQRRVQSYE 168
Query: 262 --QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCPGVSSNT 319
QK + + WV L Y+G + S Q ++ SS GV +
Sbjct: 169 FLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSS-----------------GVENTE 211
Query: 320 LAKGPSKRYLLSLP 333
L K PS+ ++ +P
Sbjct: 212 LVKSPSEYLMMLMP 225
>UniRef100_Q6C8I0 Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia
lipolytica [Yarrowia lipolytica]
Length = 266
Score = 57.8 bits (138), Expect = 1e-06
Identities = 53/193 (27%), Positives = 89/193 (45%), Gaps = 19/193 (9%)
Query: 80 VDSRNVDVEMTEAVDGSREVNPM----DEEDTVVREIDVYFSPSIDNDTKLYVMQYPLRP 135
V +V+V+ +A+D +V P+ D++D +V+E V+FS + + LY QYP R
Sbjct: 6 VPDEDVEVKTEDAMDV--DVAPVTEHDDQDDPIVKEFPVFFSTRLAGNIHLY--QYPARS 61
Query: 136 SWRPYDLDEQC--EEVRLKPGTSEVEVDLSIDLES-YNVEKATADKLKYTKQTLSTTWKP 192
PY E R+K + VEVD+ + + Y+ K T K QTL
Sbjct: 62 VDSPYTSSHATGITESRIKKESGVVEVDVPVPTDRCYDQAKGTQWK-NIDNQTLKGHLVE 120
Query: 193 PPANGCAVGLLMGDKLHLHPIHAVVQLRPSRHYLD-------SGGSEKKNVATSNNQNKQ 245
VG+ ++LHL+PI + LRPS +++ + + K A + N+ K
Sbjct: 121 SNPQENMVGVFKNNELHLNPIVSTALLRPSFDHVNQENIKDPAAAAAAKRTAQNANEPKA 180
Query: 246 TTPSMEQKSDGAP 258
+++ S+ P
Sbjct: 181 IQMTVKSSSEQTP 193
>UniRef100_UPI00003AAE48 UPI00003AAE48 UniRef100 entry
Length = 633
Score = 56.2 bits (134), Expect = 3e-06
Identities = 67/260 (25%), Positives = 105/260 (39%), Gaps = 59/260 (22%)
Query: 112 IDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLESYNV 171
IDV+ + S+ KLY+ QYP+RP+ YD D ++KP +VE++++ID + N
Sbjct: 1 IDVFLARSLLE--KLYLFQYPIRPASMTYD-DVTHLSAKIKPKQQKVELEMAIDTLNPNY 57
Query: 172 ------------------EKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPI 213
E +T KQT ++ + A + L P+
Sbjct: 58 CRSKGEQIALNVDGTCTDETSTYSSKLMDKQTFCSSQAASNVSRYAAAVYRKGDFVLLPL 117
Query: 214 HAVVQLRPSRHYLDSGGSEKKNVATSN-----------NQNKQTT-----PSMEQ-KSDG 256
+V LRPS YLD ++ + +N + KQ T P EQ +
Sbjct: 118 TSVKHLRPSFTYLDKADAKHREREAANEGGDSSQDEAEDDVKQITVRFSRPETEQARQRR 177
Query: 257 APSIE--QKSDSNQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCPG 314
S E QK + + WV L Y+G K S HE Y+ + G
Sbjct: 178 VQSYEFLQKRQAEEHWVHLHYYGLKDSRSE--------HER----------QYLFSQGHG 219
Query: 315 VSSNT-LAKGPSKRYLLSLP 333
++ NT L K PS+ ++ +P
Sbjct: 220 LAENTELIKSPSEYLMMLMP 239
>UniRef100_Q6CK31 Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
Y- 1140 of Kluyveromyces lactis [Kluyveromyces lactis]
Length = 252
Score = 51.6 bits (122), Expect = 8e-05
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 38/209 (18%)
Query: 71 DAESKIEGKVDSRNVDVEMTEAVDGSREVNPMDEEDTVVREIDVYFSPSIDNDTKLYVMQ 130
D E GK+D + E+ + E+D VV EI + + L+V+Q
Sbjct: 13 DTEMNGNGKLDKKLQSSEI------------LKEDDPVVNEIPINLTVG---PCPLHVLQ 57
Query: 131 YPLRPSWRPYDLDEQ--CEEVRLKPGTSEVEVDLSIDLESY-NVEKATADKLKYTKQTLS 187
+P +P ++DE VR K +S E+D+ ++ + + + EKA QTL
Sbjct: 58 FPNKPKRLAKNMDEHPPIAGVRYKDESSVWEIDIPLNTQVFFDKEKAAESWNNVDVQTLK 117
Query: 188 TTWKPPPANGCAV--------GLLMGDKLHLHPIHAVVQLRPSRHYLDSGGSEKKNVATS 239
G AV G++ +L+L P+ V Q+RP Y+DS KK+
Sbjct: 118 ---------GVAVSNDMLQYAGVMKQGQLYLIPVEKVAQMRPYFRYIDSHQQVKKD---E 165
Query: 240 NNQNKQTTPSMEQKSDGAPSIEQKSDSNQ 268
+ + K P+ ++ S++ S++NQ
Sbjct: 166 DAKAKPANPTAKKNQVITMSVKSSSEANQ 194
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.327 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,078,774,526
Number of Sequences: 2790947
Number of extensions: 44317937
Number of successful extensions: 197754
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 196234
Number of HSP's gapped (non-prelim): 985
length of query: 676
length of database: 848,049,833
effective HSP length: 134
effective length of query: 542
effective length of database: 474,062,935
effective search space: 256942110770
effective search space used: 256942110770
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 78 (34.7 bits)
Medicago: description of AC147178.5