BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147010.11 - phase: 0 /pseudo
(2172 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum] 173 6e-41
UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum] 168 2e-39
UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum] 167 3e-39
UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solan... 99 1e-18
UniRef100_Q6L420 Putative polyprotein [Solanum demissum] 91 3e-16
UniRef100_Q7XU13 OSJNBa0091D06.8 protein [Oryza sativa] 66 1e-08
UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic ... 64 7e-08
UniRef100_Q6ASW9 Reverse transcriptase (RNA-dependent DNA polyme... 57 5e-06
UniRef100_Q6L975 GAG-POL [Vitis vinifera] 57 6e-06
UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sa... 56 1e-05
UniRef100_O82612 T5H22.5 protein [Arabidopsis thaliana] 55 2e-05
UniRef100_Q94I69 Putative retroelement [Oryza sativa] 54 4e-05
UniRef100_Q94H67 Putative gag-pol protein [Oryza sativa] 54 4e-05
UniRef100_Q8LM25 Putative retroelement [Oryza sativa] 54 7e-05
UniRef100_Q5W683 Hypothetical protein OSJNBa0076A09.14 [Oryza sa... 54 7e-05
UniRef100_Q7X6I4 OSJNBa0039G19.2 protein [Oryza sativa] 54 7e-05
UniRef100_Q6UUS9 Putative gag-pol [Oryza sativa] 53 9e-05
UniRef100_Q6AVG0 Putative retrotransposon gag protein [Oryza sat... 53 1e-04
UniRef100_Q7XSP1 OSJNBa0070M12.15 protein [Oryza sativa] 52 2e-04
UniRef100_Q8LNE4 Putative retroelement [Oryza sativa] 52 2e-04
>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 173 bits (438), Expect = 6e-41
Identities = 101/231 (43%), Positives = 139/231 (59%), Gaps = 25/231 (10%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
V+AFDGS+++V GE+ LP+ IGPE F + F VMDI +YSCLLGRPWIH AGAV+STLHQ
Sbjct: 878 VRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQ 937
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTIEG---AEPKKA 822
KLK++ NG++VTV GEE LVS LSSF +E G T AF+ + +E AE +K
Sbjct: 938 KLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQRKP 997
Query: 823 GAAMASLKDAQKVIQDGQTAGWGKVIQLCENKRKEGLGFSPSSKVSSG-----VFHSAGF 877
GA++ S K A++V+ G+ GWGK++ L + K G+G+ P +G F SAG
Sbjct: 998 GASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSAGL 1057
Query: 878 VNAISEEANGS-----------GLRPAFVTPGGIARDWDAIDIPSIMHVSE 917
+N A GS +RP PGG +W A ++ + ++E
Sbjct: 1058 MNHGDVSATGSEDCDSDCDLDNWVRPC--APGGSINNWTAEEVVQVTLLTE 1106
>UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 168 bits (425), Expect = 2e-39
Identities = 92/191 (48%), Positives = 124/191 (64%), Gaps = 12/191 (6%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
V+AFDGS+++V GE+ LP+ IGPE F + F VMDI +YSCLLGRPWIH AGAV+STLHQ
Sbjct: 878 VRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQ 937
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTIEG---AEPKKA 822
KLK++ NG++VTV GEE LVS LSSF +E G T AF+ + +E AE +K
Sbjct: 938 KLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQRKP 997
Query: 823 GAAMASLKDAQKVIQDGQTAGWGKVIQLCENKRKEGLGFSP-----SSKVSSGVFHSAGF 877
GA++ S K A++V+ G+ GWGK++ L + K G+G+ P + + F SAG
Sbjct: 998 GASITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLRAEQNGQAGPSTFTSAGL 1057
Query: 878 VNAISEEANGS 888
+N A GS
Sbjct: 1058 MNHGDVSATGS 1068
>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 167 bits (423), Expect = 3e-39
Identities = 98/231 (42%), Positives = 136/231 (58%), Gaps = 25/231 (10%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
V+AFD S+++V GE+ LP+ IGPE F + F VMDI +YSCLLGRPWIH AGAV+STLHQ
Sbjct: 876 VRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTLHQ 935
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTIEG---AEPKKA 822
KLK++ NG++VTV GEE LVS LSSF +E G T F+ + +E AE +K
Sbjct: 936 KLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQVFETVALEKVAYAEQRKP 995
Query: 823 GAAMASLKDAQKVIQDGQTAGWGKVIQLCENKRKEGLGFSPSSKVSSG-----VFHSAGF 877
G ++ S K A++V+ G+ GWGK++ L + K G+G+ P +G F SAG
Sbjct: 996 GVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSAGL 1055
Query: 878 VNAISEEANGS-----------GLRPAFVTPGGIARDWDAIDIPSIMHVSE 917
+N A GS +RP PGG +W A ++ + ++E
Sbjct: 1056 MNHGDVSATGSEDCDSDCDLDNWVRPC--APGGSINNWTAEEVVQVTLLTE 1104
>UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 99.4 bits (246), Expect = 1e-18
Identities = 66/171 (38%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
V+AFDG++ + +GEI+L + IG +F V FQV++INASY+ LLGRPW+H AGAV STLHQ
Sbjct: 1265 VRAFDGTKTDAIGEIELILKIGHVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQ 1324
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSA-EGTAFQGLTI-------EGAEPKK 821
+KF + + V VH E V + SS I+A + E +Q + EG K
Sbjct: 1325 MVKFEYDRQEVIVHSEGDLSVYKDSSLPFIKANNENEALVYQAFEVVVVEHILEGNLISK 1384
Query: 822 AGAAMASLKDAQKVIQDGQTAGWGKVIQLCENKRKEGLGFSPSSKVSSGVF 872
MAS+ ++++ G G G I L +G + S + S G F
Sbjct: 1385 PQLPMASVMMVNEMLKHGFEPGKGLGIFL------QGRAYPVSPRKSLGTF 1429
>UniRef100_Q6L420 Putative polyprotein [Solanum demissum]
Length = 1483
Score = 91.3 bits (225), Expect = 3e-16
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 14/163 (8%)
Query: 718 KNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFIRNG 777
++ +GEI+L + IGP +F V FQV++INASY+ LLGRPW+H AGAV STLHQ +KF +
Sbjct: 213 EDAIGEIELILKIGPVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDR 272
Query: 778 KLVTVHGEEAYLVSQLSSFSCIEAGSA-EGTAFQGL-------TIEGAEPKKAGAAMASL 829
+ V VH E V + SS I+A + E +Q +EG K MAS+
Sbjct: 273 QEVIVHCERDLSVYKDSSLPFIKANNENEALVYQAFEVVVVEHNLEGNLISKPQLPMASV 332
Query: 830 KDAQKVIQDGQTAGWGKVIQLCENKRKEGLGFSPSSKVSSGVF 872
++++ G G G I L +G + S + S G F
Sbjct: 333 MMVNEMLKHGFKLGKGLGIFL------QGRAYPVSPRKSLGTF 369
>UniRef100_Q7XU13 OSJNBa0091D06.8 protein [Oryza sativa]
Length = 2657
Score = 66.2 bits (160), Expect = 1e-08
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 713 FDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 772
FD K+ LG I + I + +F V F V++ N SYS LLGRPWIH V STLHQ LK
Sbjct: 1514 FDNQGKSTLGAITVKIQMSTFSFKVHFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLK 1573
Query: 773 FIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAE 805
F+ +GK G + +V SS++ E+ A+
Sbjct: 1574 FL-DGK-----GAQQRIVGNSSSYTIQESYHAD 1600
>UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0433F09 [Oryza sativa]
Length = 2876
Score = 63.5 bits (153), Expect = 7e-08
Identities = 37/93 (39%), Positives = 50/93 (52%), Gaps = 6/93 (6%)
Query: 713 FDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 772
FD K LG I + I + +F V F V++ N SYS LLGRPWIH V STLHQ LK
Sbjct: 1432 FDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLK 1491
Query: 773 FIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAE 805
F+ +G + + S S ++ E+ A+
Sbjct: 1492 FLDG------NGVQQRITSNFSPYTIQESYHAD 1518
>UniRef100_Q6ASW9 Reverse transcriptase (RNA-dependent DNA polymerase) domain
containing protein [Oryza sativa]
Length = 1372
Score = 57.4 bits (137), Expect = 5e-06
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 484 LKDFGGNPSETKGVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 543
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSF 796
L + K+ V + A L+ L F
Sbjct: 544 CLIQWQGDKIQIVPADRAKLIELLKEF 570
>UniRef100_Q6L975 GAG-POL [Vitis vinifera]
Length = 549
Score = 57.0 bits (136), Expect = 6e-06
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 704 GEVLSWVKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAV 763
G +LS F+GS LG+I LP+ GP V F V+ + ++ +LGR W+H A+
Sbjct: 439 GRILS---GFNGSSTTSLGDIILPVQAGPVTLNVQFSVVQELSPFNIILGRTWLHYMKAI 495
Query: 764 TSTLHQKLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEG 806
ST HQ + F+ + + ++G SQL++ C + G
Sbjct: 496 PSTYHQMVIFLTHDGQIDLYG------SQLAARQCYQIAREAG 532
>UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 55.8 bits (133), Expect = 1e-05
Identities = 35/126 (27%), Positives = 60/126 (46%), Gaps = 3/126 (2%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ +G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASL 829
L + K+ V + + S C E + T++ + K+ G + S
Sbjct: 471 CLIQWQGDKIEIVPADSQLKMENPS--YCFEGVMEGSNVYTKDTVDDLDDKQ-GQGLMSA 527
Query: 830 KDAQKV 835
D +++
Sbjct: 528 DDLEEI 533
>UniRef100_O82612 T5H22.5 protein [Arabidopsis thaliana]
Length = 637
Score = 55.1 bits (131), Expect = 2e-05
Identities = 30/74 (40%), Positives = 40/74 (53%)
Query: 712 AFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKL 771
AF LG I LP+ G + +V F V D A+Y+ +LG PWI AV ST HQ L
Sbjct: 238 AFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMKAVPSTYHQWL 297
Query: 772 KFIRNGKLVTVHGE 785
KF + + T+ G+
Sbjct: 298 KFPTSNGVETIWGD 311
>UniRef100_Q94I69 Putative retroelement [Oryza sativa]
Length = 2014
Score = 54.3 bits (129), Expect = 4e-05
Identities = 37/124 (29%), Positives = 62/124 (49%), Gaps = 5/124 (4%)
Query: 713 FDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 772
F G+ G ++ +T+G + TF V+D N SYS LLGR WIH + ST+HQ L
Sbjct: 967 FGGNLSETKGVSNVELTVGNKTIPTTFFVIDGNGSYSLLLGRDWIHANCCIPSTMHQCLI 1026
Query: 773 FIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGT-AFQGLTIEGAEPKKAGAAMASLKD 831
++ K+ V + ++ + SC G EG+ + T++ + K+ G S D
Sbjct: 1027 QWQDDKIEIVPADSQL---KMENPSCYFEGVVEGSNVYIKDTVDDLDDKQ-GQGFISADD 1082
Query: 832 AQKV 835
+++
Sbjct: 1083 LEEI 1086
>UniRef100_Q94H67 Putative gag-pol protein [Oryza sativa]
Length = 2273
Score = 54.3 bits (129), Expect = 4e-05
Identities = 37/124 (29%), Positives = 62/124 (49%), Gaps = 5/124 (4%)
Query: 713 FDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLK 772
F G+ G ++ +T+G + TF V+D N SYS LLGR WIH + ST+HQ L
Sbjct: 1220 FGGNLSETKGVSNVELTVGNKTIPTTFFVIDGNGSYSLLLGRDWIHANCCIPSTMHQCLI 1279
Query: 773 FIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGT-AFQGLTIEGAEPKKAGAAMASLKD 831
++ K+ V + ++ + SC G EG+ + T++ + K+ G S D
Sbjct: 1280 QWQDDKIEIVPADSQL---KMENPSCYFEGVVEGSNVYIKDTVDDLDDKQ-GQGFISADD 1335
Query: 832 AQKV 835
+++
Sbjct: 1336 LEEI 1339
>UniRef100_Q8LM25 Putative retroelement [Oryza sativa]
Length = 858
Score = 53.5 bits (127), Expect = 7e-05
Identities = 37/134 (27%), Positives = 63/134 (46%), Gaps = 11/134 (8%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 413 LKDFGGNPSETKGVLNVELTVGSKTVPTTFFVIDRKGSYSLLLGRDWIHANCCIPSTMHQ 472
Query: 770 --------KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGAEPKK 821
K+K + + V V + L ++ C+ +G F T++ + K+
Sbjct: 473 CLIQWQGDKIKIVPADRSVNVASADLAL-WEMDGIDCLSGKVWDGD-FLKDTVDDLDDKQ 530
Query: 822 AGAAMASLKDAQKV 835
G S D +++
Sbjct: 531 -GQGFMSANDLEEI 543
>UniRef100_Q5W683 Hypothetical protein OSJNBa0076A09.14 [Oryza sativa]
Length = 1681
Score = 53.5 bits (127), Expect = 7e-05
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 803 LKHFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKRSYSLLLGRDWIHTNCCIPSTMHQ 862
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGT-AFQGLTIEGAEPKKAGAAMAS 828
L + K+ V + S++ + S G EG+ + T++ + K+ G S
Sbjct: 863 CLIQWQGHKIEVVPADSQ---SKMENPSYYFEGVVEGSDVYAKDTVDDLDDKQ-GQGFMS 918
Query: 829 LKDAQKV 835
D +++
Sbjct: 919 ADDLEEI 925
>UniRef100_Q7X6I4 OSJNBa0039G19.2 protein [Oryza sativa]
Length = 1136
Score = 53.5 bits (127), Expect = 7e-05
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G ++L +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 424 LKDFGGNPSETKGVLNLELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 483
Query: 770 KLKFIRNGKLVTVHGEEAYLVS 791
L + K+ V +++ V+
Sbjct: 484 CLIQWQGNKIEIVLADKSVNVA 505
>UniRef100_Q6UUS9 Putative gag-pol [Oryza sativa]
Length = 1672
Score = 53.1 bits (126), Expect = 9e-05
Identities = 31/97 (31%), Positives = 49/97 (49%), Gaps = 7/97 (7%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 703 LKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 762
Query: 770 KLKFIRNGKLVTVHGEEAYLVS-------QLSSFSCI 799
L + KL V + + V+ ++ S C+
Sbjct: 763 CLIQWQGDKLEIVPADRSVNVASANLALWEMDSIDCL 799
>UniRef100_Q6AVG0 Putative retrotransposon gag protein [Oryza sativa]
Length = 1251
Score = 52.8 bits (125), Expect = 1e-04
Identities = 35/120 (29%), Positives = 60/120 (49%), Gaps = 4/120 (3%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 748 LKDFGGNPSETRGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 807
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGT-AFQGLTIEGAEPKKAGAAMAS 828
L + K+ V + S++ + S G EG+ + T++ + K+ M++
Sbjct: 808 CLIQWQGDKIEIVPADSQ---SKMENPSYYFEGVVEGSNVYAKDTVDDLDDKQGQGFMSA 864
>UniRef100_Q7XSP1 OSJNBa0070M12.15 protein [Oryza sativa]
Length = 1685
Score = 52.4 bits (124), Expect = 2e-04
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V+D SYS LLGR WIH + ST+HQ
Sbjct: 787 LKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 846
Query: 770 KLKFIRNGKLVTVHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTIEGAEPKKAGAAMASL 829
L + K+ V + + S + G EG++ K G S
Sbjct: 847 CLIQWQGDKVEIVPADSRLKMKNPSYYF---EGVVEGSSIYAKDTVDDLDDKQGQGFMSA 903
Query: 830 KDAQKV 835
D +V
Sbjct: 904 DDLDEV 909
>UniRef100_Q8LNE4 Putative retroelement [Oryza sativa]
Length = 1170
Score = 52.0 bits (123), Expect = 2e-04
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 710 VKAFDGSRKNVLGEIDLPITIGPENFLVTFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 769
+K F G+ G +++ +T+G + TF V++ N SYS LLGR WIH + ST+HQ
Sbjct: 497 LKDFGGNPSETRGVLNVELTVGSKTIPTTFFVINGNGSYSLLLGRDWIHANCCIPSTMHQ 556
Query: 770 KL 771
L
Sbjct: 557 CL 558
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.354 0.154 0.541
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,866,305,031
Number of Sequences: 2790947
Number of extensions: 100051796
Number of successful extensions: 461283
Number of sequences better than 10.0: 256
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 460959
Number of HSP's gapped (non-prelim): 364
length of query: 2172
length of database: 848,049,833
effective HSP length: 143
effective length of query: 2029
effective length of database: 448,944,412
effective search space: 910908211948
effective search space used: 910908211948
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 83 (36.6 bits)
Medicago: description of AC147010.11