BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147007.6 - phase: 0 /pseudo
(1105 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6L3H0 Putative receptor kinase [Solanum demissum] 499 e-139
UniRef100_Q6L3Q0 Putative polyprotein [Solanum demissum] 396 e-108
UniRef100_Q8W153 Polyprotein [Oryza sativa] 328 6e-88
UniRef100_Q04358 Potato DNA for copia-like transposable element ... 307 1e-81
UniRef100_Q7XE85 Putative pol polyprotein [Oryza sativa] 300 1e-79
UniRef100_Q5XWK9 Gag-pol polyprotein-like [Solanum tuberosum] 295 7e-78
UniRef100_Q9FWZ5 Putative retroelement polyprotein [Arabidopsis ... 290 2e-76
UniRef100_Q9ZPU4 Putative retroelement pol polyprotein [Arabidop... 284 9e-75
UniRef100_Q7XPF2 OSJNBa0060N03.9 protein [Oryza sativa] 280 1e-73
UniRef100_Q9ZVW0 Putative retroelement pol polyprotein [Arabidop... 276 3e-72
UniRef100_Q9LVQ2 Retroelement pol polyprotein-like [Arabidopsis ... 276 3e-72
UniRef100_Q9ZQK0 Putative retroelement pol polyprotein [Arabidop... 270 2e-70
UniRef100_Q710T7 Gag-pol polyprotein [Populus deltoides] 266 2e-69
UniRef100_O04543 F20P5.25 protein [Arabidopsis thaliana] 263 3e-68
UniRef100_Q9C8F4 Ty1/copia-element polyprotein [Arabidopsis thal... 259 3e-67
UniRef100_O22175 Putative retroelement pol polyprotein [Arabidop... 258 7e-67
UniRef100_Q9FJV3 Retroelement pol polyprotein-like [Arabidopsis ... 257 2e-66
UniRef100_O23741 SLG-Sc and SLA-Sc genes and Melmoth retrotransp... 252 5e-65
UniRef100_Q5XWR5 Putative retroelement pol polyprotein-like [Sol... 251 7e-65
UniRef100_Q9SIM3 Putative retroelement pol polyprotein [Arabidop... 251 7e-65
>UniRef100_Q6L3H0 Putative receptor kinase [Solanum demissum]
Length = 1358
Score = 499 bits (1284), Expect = e-139
Identities = 251/478 (52%), Positives = 331/478 (68%), Gaps = 20/478 (4%)
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
IT ANG + + G+G+A PL S++L+ VL++ GSPFNL S+S+LT++L+CSITF D FL
Sbjct: 389 ITLANGIQTKPKGVGKAKPLSSVTLDSVLYVPGSPFNLASVSRLTKALHCSITFFDDFFL 448
Query: 128 IQDRSTGKTIGT*FES*GLYYLHSHPS-TICGVSASPDIIHCRLGHPSLDKLKVLVPHLS 186
+QDRSTG+ IGT ES GLYYL S S C ++ SPD+IH RLGH SL KL+ +VP LS
Sbjct: 449 MQDRSTGQMIGTGHESQGLYYLTSSNSLAACSITDSPDLIHKRLGHSSLSKLQKMVPSLS 508
Query: 187 HLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDD 246
L +LDCESCQLGKH R +F RS S F+++HSD+WGPSRVSSTLG++Y+V+FIDD
Sbjct: 509 SLSTLDCESCQLGKHTRATFSRSTEGRSESIFSLVHSDIWGPSRVSSTLGFRYFVSFIDD 568
Query: 247 FSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGI 306
+S+CTW+ L+KDRS LF F++F + I+ QFG +IR RSDNA Y S+ F FM GI
Sbjct: 569 YSKCTWVFLMKDRSELFSIFKSFFAEIQNQFGVSIRTFRSDNALEYLSSQFREFMTHQGI 628
Query: 307 IHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVL 366
IHQ++CP+TPQQNGVAERK+RHL++T RTLL+ ++ P RFWGDA+L +CYLI RMPSS +
Sbjct: 629 IHQTTCPYTPQQNGVAERKNRHLIETARTLLLESNVPLRFWGDAVLTSCYLINRMPSSSI 688
Query: 367 GNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRC 426
N++P+S+LFP+ LY +P RVFGSTCF H+L+P +DKL+ RA+KCVFLGYS+ QKGYRC
Sbjct: 689 QNQVPHSILFPQSHLYPIPPRVFGSTCFVHNLAPGKDKLAPRALKCVFLGYSRVQKGYRC 748
Query: 427 YSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVSTQN 486
YS HR+ +S DVTFFE +P++ TS+ S V+PIP P +
Sbjct: 749 YSHDLHRYLMSADVTFFESQPYY------------TSSNHPDVSMVLPIPQVLPVPTFVE 796
Query: 487 PPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTPKTPATNSSDSGIVPVSSPAAV 544
+ +P +TY R P P DS + P + + P S P A+
Sbjct: 797 STVTSTSPVVVPPLLTYHRR--PRPTLVPDDSCHAPDPAPTAD-----LPPPSQPLAL 847
>UniRef100_Q6L3Q0 Putative polyprotein [Solanum demissum]
Length = 1336
Score = 396 bits (1017), Expect = e-108
Identities = 221/505 (43%), Positives = 293/505 (57%), Gaps = 31/505 (6%)
Query: 67 NITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSF 126
++T +G + G G + S++L+ VL + FNLIS+SKLT+ L C ++ D
Sbjct: 393 SVTIVDGSSYTIEGSGTVNHTSSITLSSVLGLPSHAFNLISVSKLTKELKCFVSLYPDHC 452
Query: 127 LIQDRSTGKTIGT*FES*GLYYLH--SHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPH 184
L QD T + IG S GLY L + PS C SP HCRLGHPSL LK L P
Sbjct: 453 LFQDLMTKQIIGKRHVSDGLYILDEWTPPSVACSSIVSPFEAHCRLGHPSLPVLKKLCPQ 512
Query: 185 LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFI 244
++ S+DCESC KH R+S R NKR+ F ++HSDVWGP V S +G++Y+VTF+
Sbjct: 513 FHNVPSIDCESCHFAKHHRISLSPRNNKRANFAFELVHSDVWGPCPVVSKVGFRYFVTFM 572
Query: 245 DDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
DDFSR TWI +K+RS +F F FC+ IKTQF ++ ILRSDNA+ + S SF ++M +
Sbjct: 573 DDFSRMTWIYFMKNRSEVFSHFSNFCAEIKTQFNASVHILRSDNAREFMSASFQNYMNQY 632
Query: 305 GIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSS 364
GI+HQSSC TP QNGVAERK+RHL++T R LL P +FW D + A +LI RMPS+
Sbjct: 633 GILHQSSCVDTPSQNGVAERKNRHLLETARVLLFQMKVPKQFWADTVSTASFLINRMPST 692
Query: 365 VLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGY 424
VL +IPY +LFP PL+ + +VFGSTC+ D+ P KL +A+KCVFLGYS+ QKGY
Sbjct: 693 VLNGDIPYGVLFPNKPLFPLEPKVFGSTCYVRDVRPHITKLDPKALKCVFLGYSRLQKGY 752
Query: 425 RCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTS-------TTDVTTSHVMPIP- 476
RCYSP+ +R+ VS DV F E FF+SP T + TT + +P
Sbjct: 753 RCYSPTLNRYMVSIDVVFSESISFFSSPDTFPTQGQQEDEEWLIYRTTPSRSEQHKEVPG 812
Query: 477 LFEPFVS--TQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTPKTPATNSSDSG 534
E + + + P +Q P Q Y R V +ND+ P P +SSD
Sbjct: 813 SVEQSMENVSSDAPLAQTKPPIVQ---VYSRRQV---------TNDTCP-APTLSSSD-- 857
Query: 535 IVPVSSPAAVPPERPIDLPIAFRKD 559
P P +D+PIA RKD
Sbjct: 858 ----PLPVNPSPTENLDIPIALRKD 878
Score = 55.1 bits (131), Expect = 1e-05
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 956 IGQEMQVIDGLLLVIAFLWAEI*FHGRAKSRLLSPDRVQKPSIELWLILHVSLCG---*N 1012
IG + ++I+GLLL LW EI +HG ++++L D VQ PS ELW V LCG
Sbjct: 1197 IGLDPRLIEGLLLATVSLWVEIWYHGEVRNKMLYLDLVQNPSTELWHNPQVRLCGYFNPK 1256
Query: 1013 IYCKNYIFVRLVKWNLY 1029
++C N + + +Y
Sbjct: 1257 LWCDNQAALHIASNPVY 1273
>UniRef100_Q8W153 Polyprotein [Oryza sativa]
Length = 1472
Score = 328 bits (841), Expect = 6e-88
Identities = 174/402 (43%), Positives = 245/402 (60%), Gaps = 15/402 (3%)
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
I A+G QV G G PS++L+ VL++ P NLISIS L +++C ++ ++ L
Sbjct: 397 IQTADGTSCQVKGEGIVQCTPSITLSSVLYVHSFPVNLISISSLVDNMDCRVSLDRENCL 456
Query: 128 IQDRSTGKTIGT*FES*GLYYLHSHPST--ICGVSASPD-------IIHCRLGHPSLDKL 178
IQ+R TGK +G GL+YL + +C + AS ++HCRLGH S + +
Sbjct: 457 IQERRTGKKLGIGIRRDGLWYLDRRGTNEDVCALMASTSKEVTEVLLLHCRLGHISFEIM 516
Query: 179 KVLVP-HLSHLKS--LDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTL 235
+ P S + L C++C+ GKH R S+ SR RS+ PF +IHSDVW S V S
Sbjct: 517 SKMFPVEFSKVDKHMLICDACEYGKHTRTSYVSRG-LRSILPFMLIHSDVW-TSPVVSMS 574
Query: 236 GYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFST 295
G KY+VTFID +SR TW+ L++ + + FQ F + IK F ++ +R+DN Y ++
Sbjct: 575 GMKYFVTFIDCYSRMTWLYLMRHKDEVLKCFQNFYAYIKNHFNARVQFIRTDNGGEYMNS 634
Query: 296 SFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIAC 355
F F++ GI+HQ+SCP TP QNGVAERK+RHL++ R+L+ + P W +A++ A
Sbjct: 635 EFGHFLSLEGILHQTSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAA 694
Query: 356 YLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFL 415
YLI R PS +LG + PY ++F K+ +VVP RVFG TCF D P KL RAVKC+F+
Sbjct: 695 YLINRTPSRILGMKTPYEMIFGKNE-FVVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFI 753
Query: 416 GYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGS 457
GYS +QKGY+C+SPS R +VS DVTF E PF+ T S
Sbjct: 754 GYSSSQKGYKCWSPSERRTFVSMDVTFRESVPFYGEKTDISS 795
>UniRef100_Q04358 Potato DNA for copia-like transposable element [Solanum tuberosum]
Length = 675
Score = 307 bits (786), Expect = 1e-81
Identities = 168/381 (44%), Positives = 235/381 (61%), Gaps = 20/381 (5%)
Query: 88 PSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLY 147
PSL L+ L + NL+S KLT+SLNC + F SD Q++ +GK IG+ ES GLY
Sbjct: 17 PSLVLHDTLHVPKLSCNLVSFRKLTRSLNCRVIFYSDLCEFQEKVSGKMIGSARESGGLY 76
Query: 148 YLHSHPSTI---------CGVSASPDIIHCRLGHPSLDKLKVLVPHLSHLKS---LDCES 195
+L + +++ V + H LGHPS L+ L+P L K+ CE
Sbjct: 77 FLDNGNNSLQLNPIFLNSTFVLNKVMLWHYGLGHPSFYYLRHLLPQLFRNKNPSLFQCEF 136
Query: 196 CQLGKH-VRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWIT 254
C++ KH V SFPS+ + S PF +IHSDVWGPSR+S+ G +++VTFIDD +R +W+
Sbjct: 137 CEMAKHHVDTSFPSQRYQAS-KPFTMIHSDVWGPSRISTMFGKRWFVTFIDDHTRLSWVF 195
Query: 255 LLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPH 314
LLK +S + F+TF ++TQF + I+I RSDN + +F+ SF G++HQSSCP
Sbjct: 196 LLKGKSEVKNVFETFHVMVETQFNEKIKIFRSDNGREFFNEQLGSFFRKTGVVHQSSCPD 255
Query: 315 TPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSL 374
TPQQNG+AERK+RHL++ TR L+ + P WG+A+L A YLI RMPS L + P+ +
Sbjct: 256 TPQQNGIAERKNRHLLEATRALMFTSKVPQHLWGEALLTATYLINRMPSRPLEFKTPFKV 315
Query: 375 L---FPKDPLYV-VPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPS 430
FP L +PLRVFG T F H +R KL RA KC+F+GY+ +QKGY+CY P
Sbjct: 316 FRESFPSSRLTTDLPLRVFGCTTFVH--VHNRSKLEPRAKKCIFVGYAPSQKGYKCYDPH 373
Query: 431 AHRFYVSKDVTFFEDRPFFAS 451
A + V+ D+TFFE + +F +
Sbjct: 374 ARKIIVTMDLTFFESQLYFTT 394
>UniRef100_Q7XE85 Putative pol polyprotein [Oryza sativa]
Length = 1688
Score = 300 bits (769), Expect = 1e-79
Identities = 200/517 (38%), Positives = 271/517 (51%), Gaps = 38/517 (7%)
Query: 60 CHLLRY-LNITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCS 118
C L++ + ANG +VT G S P ++ V + NLIS+ +LT + NC
Sbjct: 204 CRLVKNGATVHTANGTLCKVTHQGSISS-PQFTVPNVSLVPKLSMNLISVGQLTDT-NCF 261
Query: 119 ITFSSDSFLIQDRSTGKTIGT*FE---S*GLYYLHSHP------------STICGVSA-S 162
+ F S +QDR TG IGT S GLY L S S +C + S
Sbjct: 262 VGFDDTSCFVQDRHTGAVIGTGHRQKRSCGLYILDSLSLPSSSTNTPSVYSPMCSTACKS 321
Query: 163 PDIIHCRLGHPSLDKLKVLVPHLSHLKSLD------CESCQLGKHVRVSFPSRANKRSMS 216
H RLGH +L L+ + L S+ C+ C+LGK V++ +PS + RS
Sbjct: 322 FPQWHHRLGHLCGSRLATLI-NQGVLGSVPVDTTFVCKGCKLGKQVQLPYPS-STSRSSR 379
Query: 217 PFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQ 276
PF+++HSDVWG S S G+ YYV F+DD+SR TWI +K RS L +Q+F I TQ
Sbjct: 380 PFDLVHSDVWGKSPFPSKGGHNYYVIFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQ 439
Query: 277 FGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTL 336
F IRI RSD+ Y S +F F+ S G + Q SCP QNGVAERKHRH+++T RTL
Sbjct: 440 FSSAIRIFRSDSGGEYMSNAFREFLVSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTL 499
Query: 337 LINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAH 396
LI + P FW +AI A YLI PSS L P +LF P Y LRVFG TC+
Sbjct: 500 LIASFVPAHFWAEAISTAVYLINMQPSSSLQGRSPGEVLFGSPPRY-DHLRVFGCTCYVL 558
Query: 397 DLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSG 456
+R KL+A++V+CVFLGYS KGYRCY PSA R +S+DVTF E++PFF S T
Sbjct: 559 LAPRERTKLTAQSVECVFLGYSLEHKGYRCYDPSARRIRISRDVTFDENKPFFYSSTNQP 618
Query: 457 STTSTTSTTDVTTSHVMPIPLFE-----PFVSTQNP-PQSQGNPEFRQYGITYELRHVEA 510
S+ + ++ ++ PIP E P + +P P S +P + +
Sbjct: 619 SSPENS----ISFLYLPPIPSPESLPSSPITPSPSPIPPSVPSPTYVPPPPPSPSPSPVS 674
Query: 511 PETAPIDSNDSTPKTPATNSSDSGIVPVSSPAAVPPE 547
P + I ++ S P P+T + D+ S +P E
Sbjct: 675 PPPSHIPASSSPPHVPSTITLDTFPFHYSRRPKIPNE 711
>UniRef100_Q5XWK9 Gag-pol polyprotein-like [Solanum tuberosum]
Length = 1212
Score = 295 bits (754), Expect = 7e-78
Identities = 181/483 (37%), Positives = 267/483 (54%), Gaps = 55/483 (11%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
ANG +T +G +P + V +LIS+ +L + NC + FS + L+QD
Sbjct: 352 ANGSNLPITKVGDITP----TFKNVFVSPKLSTSLISVGQLVDN-NCDVNFSRNGCLVQD 406
Query: 131 RSTGKTIGT*FES*GLYYLH-SHPSTI---CGVSASP-DIIHCRLGHPSLDKLKVLVPHL 185
+ +G I + L+ +H S P + C +AS ++ H RLGHP+ V++ H+
Sbjct: 407 QVSGTIIAKGPKVGRLFPIHFSIPPVLSFACTSTASKTEVWHKRLGHPN----SVVLSHI 462
Query: 186 SH-----------LKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSST 234
S+ + S+DC +C+LGK + FP+ + R+ F++IHSDVWG S + S
Sbjct: 463 SNSGLLGNKNKFSVASIDCSTCKLGKSKTLPFPNFGS-RATKCFDVIHSDVWGISPIISH 521
Query: 235 LGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFS 294
+KY++TFIDD+SR TW+ L+ +S +F F+TF + I+TQF I++LRSD+ Y S
Sbjct: 522 AHFKYFMTFIDDYSRFTWVYFLRSKSEVFSMFKTFLAYIETQFSTCIKLLRSDSGGEYMS 581
Query: 295 TSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIA 354
F F+ GI+ Q SCP+TPQQNGVAERK+RHL+D TRTLLI + P ++W +A+ A
Sbjct: 582 YEFKKFLLDKGIVSQHSCPYTPQQNGVAERKNRHLLDVTRTLLIESSVPSKYWVEALSTA 641
Query: 355 CYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVF 414
YLI R+PS VL E PY L+ ++P Y FG CF H +KLS ++ KC F
Sbjct: 642 VYLINRLPSKVLNLESPYFRLYHQNPNY-SDFHTFGCVCFVHLPPSQCNKLSVQSTKCAF 700
Query: 415 LGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMP 474
+GYS +QKG+ CY P +H+F +S++V FFE++ FF T V S V P
Sbjct: 701 MGYSTSQKGFICYDPCSHKFRISRNVVFFENQYFF--------------PTIVDLSSVSP 746
Query: 475 -IPLFEPFVSTQNPPQSQGNPEFRQY--GITYELRHVEAPETAPIDSNDSTPKTPATNSS 531
+P FE S+ F+++ G YE R P ++ P+ + NSS
Sbjct: 747 LLPTFEDLSSS-----------FKRFKPGFVYERRRPTLPYPNTDPPPETAPQLESENSS 795
Query: 532 DSG 534
SG
Sbjct: 796 RSG 798
>UniRef100_Q9FWZ5 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1404
Score = 290 bits (741), Expect = 2e-76
Identities = 185/508 (36%), Positives = 257/508 (50%), Gaps = 24/508 (4%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
ANG K + GIG S + F+ NL+S+ + T+ LNC F + QD
Sbjct: 359 ANGDKVPIEGIGNLKLFNKDSKAF--FMPKFTSNLLSVKRTTRDLNCYAIFGPNDVYFQD 416
Query: 131 RSTGKTIGT*FES*GLYYLH--SHPSTICGVSASP------DIIHCRLGHPSLDKLKVLV 182
TGK IG LY L S S+ C S S + H RLGHP LK+++
Sbjct: 417 IETGKVIGEGGSKGELYVLEDLSPNSSSCFSSKSHLGISFNTLWHARLGHPHTRALKLML 476
Query: 183 PHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVT 242
P++S CE+C LGKH + FP F+++HSDVW VS KY+VT
Sbjct: 477 PNIS-FDHTSCEACILGKHCKSVFPKSLTIYEKC-FDLVHSDVWTSPCVSRD-NNKYFVT 533
Query: 243 FIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMA 302
FI++ S+ TWITLL + +F AF F + + QF I++ R+DN Y S F +A
Sbjct: 534 FINEKSKYTWITLLPSKDRVFEAFTNFETYVTNQFNAKIKVFRTDNGGEYTSQKFRDHLA 593
Query: 303 SHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMP 362
GIIHQ+SCP+TPQQNGVAERK+RHL++ R+++ + P RFWGDA+L ACYLI R P
Sbjct: 594 KRGIIHQTSCPYTPQQNGVAERKNRHLMEVARSMMFHTSVPKRFWGDAVLTACYLINRTP 653
Query: 363 SSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQK 422
+ VL + P+ +L P ++ LRVFG CF R KL A++ KC+FLGYS TQK
Sbjct: 654 TKVLSDLSPFEVLNNTKP-FIDHLRVFGCVCFVLIPGEQRSKLDAKSTKCMFLGYSTTQK 712
Query: 423 GYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTD-VTTSHVMPIPLFEPF 481
GY+C+ P+ +R ++S+DV F E++ + T ST+D V T + L
Sbjct: 713 GYKCFDPTKNRTFISRDVKFLENQDYNNKKDWENLKDLTHSTSDRVETLKFLLDHLGNDS 772
Query: 482 VST--QNPPQSQGNPEFRQYGITYELRHVE----APETAPIDSNDSTPKTPATNSSDSGI 535
ST P +Q + Q L+H E E P S + S
Sbjct: 773 TSTTQHQPEMTQDQEDLNQENEEVSLQHQENLTHVQEDPPNTQEHSEHVQEIQDDSSEDE 832
Query: 536 VPVSSPAAVPPERPIDLPIAFRKDKKVY 563
P +PP P+ R+ K+ +
Sbjct: 833 EPTQ---VLPPPPPLRRSTRIRRKKEFF 857
>UniRef100_Q9ZPU4 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 284 bits (727), Expect = 9e-75
Identities = 179/491 (36%), Positives = 258/491 (52%), Gaps = 19/491 (3%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
A+G KA +G + ++SL VLF+ LIS+SKL + C TF+ +QD
Sbjct: 432 ADGSKAFALSVGVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQD 491
Query: 131 RSTGKTIGT*FES*GLYYLHS-HPSTI--CGVSASPDIIHCRLGHPS---LDKLKVLVPH 184
RS+ IG+ E G+YYL P+ I V + + H RLGHPS L L +
Sbjct: 492 RSSKTLIGSGEERGGVYYLTDVTPAKIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSKT 551
Query: 185 LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFI 244
S + S C+ C K R FP NK F++IH DVWGP RV ++ G Y++T +
Sbjct: 552 SSTVTSHSCDVCFRAKQTREVFPESINKTEEC-FSLIHCDVWGPYRVPASCGAVYFLTIV 610
Query: 245 DDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
DD+SR W LL ++S + F + QFGKT++++RSDN + S S+ +
Sbjct: 611 DDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMCLS--SYFREN 668
Query: 305 GIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSS 364
GIIHQ+SC TPQQNG ERKHRH+++ R LL A P +FWG++IL A YLI R PSS
Sbjct: 669 GIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSS 728
Query: 365 VLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGY 424
+L PY +L P+Y LRVFGS C+ H ++ D+DK R+ C+F+GY +KG+
Sbjct: 729 ILSGRTPYEVLHGSKPVY-SQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGW 787
Query: 425 RCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVST 484
+ Y + F VS+DV F E+ F + ST ++TS V+ IP E S
Sbjct: 788 KVYDIERNEFLVSRDVIFREE--VFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSI 845
Query: 485 QNPPQSQGNPEFRQYGITYELRHVEAP--ETAPIDSNDSTPKTPATNSSDSG-----IVP 537
+ + + + + E P E P D+ S+P + + + S + +VP
Sbjct: 846 DSVETERVVCTTDEVVLDTSVSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVP 905
Query: 538 VSSPAAVPPER 548
V+SP V P +
Sbjct: 906 VASPIPVSPPK 916
>UniRef100_Q7XPF2 OSJNBa0060N03.9 protein [Oryza sativa]
Length = 1045
Score = 280 bits (717), Expect = 1e-73
Identities = 148/358 (41%), Positives = 214/358 (59%), Gaps = 11/358 (3%)
Query: 103 FNLISISKLTQSL--NCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYLHSH----PSTI 156
F ++ S+L + L + ++ + S + R T + IGT GL+Y++ P+ +
Sbjct: 343 FVRLTFSQLARLLINSSALLYLMRSLVCSRRRTRRRIGTGVRRDGLWYINHEELGLPALV 402
Query: 157 CGVSASPDIIHCRLGHPSLDKLKVLVPHLSHLKS---LDCESCQLGKHVRVSFPSRANKR 213
V ++HC+LGHPS + L L P L L C++C+LGKH R ++ R
Sbjct: 403 GDVEKEISLLHCQLGHPSFEILSKLYPDLFSRVDKHRLVCDACELGKHTRSTYVG-IGLR 461
Query: 214 SMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*I 273
+ PF +IHSDVWGP V+S G+K++VTFID +R TWI +LK +S + FQ F +
Sbjct: 462 NCEPFILIHSDVWGPCPVTSVSGFKWFVTFIDCHTRMTWIYMLKHKSEVLRCFQDFHKLV 521
Query: 274 KTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTT 333
TQF ++I+R+DN Y + F S+++ GIIHQ++CP TP QNGVAERK+RHL++
Sbjct: 522 TTQFDAKVKIIRTDNGTEYINNEFVSYVSDEGIIHQTTCPGTPPQNGVAERKNRHLLEVA 581
Query: 334 RTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTC 393
R+L+ + P W +A++ A YLI RMPS +LG + P LL K + VP +VFG C
Sbjct: 582 RSLMFQMNVPKYLWSEAVMTAAYLINRMPSRILGMKSPAELLLGKRE-FKVPPKVFGCVC 640
Query: 394 FAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFAS 451
F D P KL AVKCVF+GY+ +QKGY+C+ P R +VS DVTF E P++ S
Sbjct: 641 FVRDHRPSVGKLDPHAVKCVFVGYASSQKGYKCWDPIERRLFVSMDVTFREFEPYYKS 698
>UniRef100_Q9ZVW0 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 276 bits (706), Expect = 3e-72
Identities = 177/490 (36%), Positives = 254/490 (51%), Gaps = 21/490 (4%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
A+G K +G ++SL+ VL++ +LIS+SKL + + C F+ ++QD
Sbjct: 415 ADGRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQD 474
Query: 131 RSTGKTIGT*FES*GLYYL-HSHPSTICGVSASPD--IIHCRLGHPS---LDKLKVLVPH 184
R + IGT E G+YYL + +T+ V + D + H RLGHPS L L +
Sbjct: 475 RFSRTLIGTGEERDGVYYLTDAATTTVHKVDITTDHALWHQRLGHPSFSVLSSLPLFSGS 534
Query: 185 LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFI 244
+ S C+ C K R FP +NK S F++IH DVWGP RV S+ G Y++T +
Sbjct: 535 SCSVSSRSCDVCFRAKQTREVFPDSSNK-STDCFSLIHCDVWGPYRVPSSCGAVYFLTIV 593
Query: 245 DDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
DDFSR W LL +S + F + + QFGK+++I+RSDN + S S+
Sbjct: 594 DDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLS--SYFKEQ 651
Query: 305 GIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSS 364
GI+HQ+SC TPQQNG ERKHRH+++ +R LL A P +FWG+A++ A YLI R PSS
Sbjct: 652 GIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSS 711
Query: 365 VLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGY 424
+ PY LL P Y LRVFGS C+AH ++ D+DK R+ C+F+GY QKG+
Sbjct: 712 IHNGLSPYELLHGCKPDY-DQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGW 770
Query: 425 RCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTT--SHVMPIPLFEPFV 482
+ Y S + F VS+DV F E+ F T G T T T T +P E
Sbjct: 771 KVYDLSTNEFIVSRDVVFREN--VFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRG 828
Query: 483 STQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSND----STPKTPATNSSDSGIVPV 538
S +N +P ++ + P++ P +D ST TP ++S
Sbjct: 829 SDEN---YLSDPPVCVTNVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTS 885
Query: 539 SSPAAVPPER 548
S PP++
Sbjct: 886 PSTNVSPPQQ 895
>UniRef100_Q9LVQ2 Retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 276 bits (705), Expect = 3e-72
Identities = 177/490 (36%), Positives = 254/490 (51%), Gaps = 21/490 (4%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
A+ K +G ++SL+ VL++ +LIS+SKL + + C F+ ++QD
Sbjct: 415 ADDRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQD 474
Query: 131 RSTGKTIGT*FES*GLYYL-HSHPSTICGVSASPD--IIHCRLGHPS---LDKLKVLVPH 184
R + IGT E G+YYL + +T+ V + D + H RLGHPS L L +
Sbjct: 475 RFSRTLIGTGEERDGVYYLTDAATTTVHKVDVTTDHALWHQRLGHPSFSVLSSLPLFSGS 534
Query: 185 LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFI 244
+ S C+ C K R FP +NK S F++IH DVWGP RV S+ G Y++T +
Sbjct: 535 SCSVSSRSCDVCFRAKQTREVFPDSSNK-STDCFSLIHCDVWGPYRVPSSCGAVYFLTIV 593
Query: 245 DDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
DDFSR W LL +S + F + + QFGK+++I+RSDN + S S+
Sbjct: 594 DDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLS--SYFKEQ 651
Query: 305 GIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSS 364
GI+HQ+SC TPQQNG ERKHRH+++ +R LL A P +FWG+A++ A YLI R PSS
Sbjct: 652 GIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSS 711
Query: 365 VLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGY 424
+ PY LL P Y LRVFGS C+AH ++ D+DK R+ C+F+GY QKG+
Sbjct: 712 IHNGLSPYELLHGCKPDY-DQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGW 770
Query: 425 RCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTT--SHVMPIPLFEPFV 482
+ Y S + F VS+DV F E+ F T G T T T T +P E
Sbjct: 771 KVYDLSTNEFIVSRDVVFREN--VFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRG 828
Query: 483 STQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSND----STPKTPATNSSDSGIVPV 538
S +N S +P ++ + P++ P +D ST TP ++S
Sbjct: 829 SDEN---SLSDPPVCVTDVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTS 885
Query: 539 SSPAAVPPER 548
S PP++
Sbjct: 886 PSTNVSPPQQ 895
>UniRef100_Q9ZQK0 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1664
Score = 270 bits (689), Expect = 2e-70
Identities = 163/439 (37%), Positives = 235/439 (53%), Gaps = 18/439 (4%)
Query: 67 NITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSF 126
N+ ANG + V G+G S + + S NL+S+ K T LNC F +
Sbjct: 339 NVVIANGDRIPVKGVGDLDLFDKSSKAFYMPTFTS--NLLSVKKATTDLNCYAIFGPNEV 396
Query: 127 LIQDRSTGKTIGT*FES*GLYYLH---------SHPSTICGVSASPDIIHCRLGHPSLDK 177
QD T + +G GLY L SH S+I G +A+ + H RLGHP
Sbjct: 397 HFQDIETSRVLGQGVTKDGLYVLEDTKPSVPLSSHFSSILG-NANSESWHARLGHPHSRA 455
Query: 178 LKVLVPHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGY 237
LK+L+P S K+ +CE+C LGKH + FP + F++IHSDVW S S +
Sbjct: 456 LKLLLPSTS-FKNDECEACILGKHCKSVFPKSSTIYEKC-FDLIHSDVW-TSPCLSRENH 512
Query: 238 KYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSF 297
KY+VTFID+ S+ TW TLL + + AF F + + + I+ILRSDN Y S +F
Sbjct: 513 KYFVTFIDEKSKFTWFTLLPSKDRVLEAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAF 572
Query: 298 NSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYL 357
+ HGIIHQ+SCP+TPQQNGVAERK+RHL++ R ++ + + P FW D ++ ACYL
Sbjct: 573 KQHLNKHGIIHQTSCPYTPQQNGVAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYL 632
Query: 358 ITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGY 417
I + P+ +L + P+ +L P ++ LRVFG CF R+KL ++ K +F+GY
Sbjct: 633 INQTPTKILLDSSPFEVLNKVKP-FINHLRVFGCVCFVLISGEQRNKLQPKSTKGMFIGY 691
Query: 418 SKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTD-VTTSHVMPIP 476
S QKGY+CY + +S+DV F E + ++ T S +D T ++
Sbjct: 692 SINQKGYKCYVLETRKVLISRDVKFLESKSYYDKKNWEDIQDLTDSPSDRATNLRIILER 751
Query: 477 LFEPFVSTQNPPQSQGNPE 495
L + TQ P++ NPE
Sbjct: 752 LGVSNIQTQTTPRT-SNPE 769
>UniRef100_Q710T7 Gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 266 bits (681), Expect = 2e-69
Identities = 165/418 (39%), Positives = 224/418 (53%), Gaps = 22/418 (5%)
Query: 63 LRYLNITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFS 122
L + + A+G + G+G L LSL V I NL SI ++ S + + FS
Sbjct: 365 LSSIPVMTADGTPMPLAGVGSVVTL-HLSLPNVYLIPKLKLNLASIGQICDSGDYLVMFS 423
Query: 123 SDSFLIQDRSTGKTIGT*FES*GLYYLHSHPSTICGVSASPDII--------------HC 168
+QD + K IGT GLY L + + + D+ H
Sbjct: 424 GSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVVVAATTVDLSFFRLSLSSSSFYLWHS 483
Query: 169 RLGHPSLDKLKVLVPH--LSHLKSLD---CESCQLGKHVRVSFPSRANKRSMSPFNIIHS 223
RLGH S +L+ L L +LK+ D C C+L K + F +R+ S SPF++IHS
Sbjct: 484 RLGHVSSSRLRFLASTGALGNLKTCDISDCSGCKLAKFSALPF-NRSTSVSSSPFDLIHS 542
Query: 224 DVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRI 283
DVWGPS VS+ G +YYV+FIDD +R W+ L+K RS F + F + IKTQ I+
Sbjct: 543 DVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFRALIKTQHSAVIKC 602
Query: 284 LRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAP 343
R D Y S F +A G IHQ+SC TP+QNGVAERKHRH+V+T R+LL++A
Sbjct: 603 FRCDLGGEYTSNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHRHIVETARSLLLSAFVL 662
Query: 344 FRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRD 403
FWG+A+L A LI +PSS P+ L+ P Y RVFG T F +R+
Sbjct: 663 SEFWGEAVLTAVSLINTIPSSHSSGLSPFEKLYGHVPDY-SSFRVFGCTYFVLHPHVERN 721
Query: 404 KLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTST 461
KLS+R+ CVFLGY + +KGYRC+ P + YVS V F E PFF+ P+T+ S T +
Sbjct: 722 KLSSRSAICVFLGYGEGKKGYRCFDPITQKLYVSHHVVFLEHIPFFSIPSTTHSLTKS 779
>UniRef100_O04543 F20P5.25 protein [Arabidopsis thaliana]
Length = 1315
Score = 263 bits (671), Expect = 3e-68
Identities = 149/376 (39%), Positives = 209/376 (54%), Gaps = 19/376 (5%)
Query: 90 LSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYL 149
L LN VLFI FNL+S+S LT+S+ C I F S ++QD + +G + LY +
Sbjct: 323 LILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIV 382
Query: 150 H----SHPSTICGVSA----SPDIIHCRLGHPSLDKLKVLVPHLSHLKSLD-----CESC 196
SHP T ++ S D+ H RLGHPS+ KL+ + LS K + C C
Sbjct: 383 DLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVC 442
Query: 197 QLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLL 256
+ K + F S NK S PF++IH D WGP V + GY+Y++T +DD+SR TW+ LL
Sbjct: 443 HISKQKHLPFVSHNNKSSR-PFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLL 501
Query: 257 KDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTP 316
+++S + TF + ++ QF TI+ +RSDNA +F F S GI+ SCP TP
Sbjct: 502 RNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAP---ELNFTQFYHSKGIVPYHSCPETP 558
Query: 317 QQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLF 376
QQN V ERKH+H+++ R+L +H P +WGD IL A YLI R+P+ +L ++ P+ +L
Sbjct: 559 QQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLT 618
Query: 377 PKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYV 436
P Y ++VFG C+A DR K S RA C F+GY KGY+ H V
Sbjct: 619 KTVPTY-DHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIV 677
Query: 437 SKDVTFFEDR-PFFAS 451
S+ V F E+ PF S
Sbjct: 678 SRHVVFHEELFPFLGS 693
>UniRef100_Q9C8F4 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 259 bits (662), Expect = 3e-67
Identities = 165/472 (34%), Positives = 241/472 (50%), Gaps = 50/472 (10%)
Query: 89 SLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYY 148
++ L +VLF+ LIS+++L + L+C F+ +IQDR++ IG ES G+Y+
Sbjct: 432 NMKLTHVLFVPDLSCTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVYH 491
Query: 149 LH-----SHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHL-------SHLKSLDCESC 196
L + + + + + H RLGHPS L ++P L S LK++ C+ C
Sbjct: 492 LQRAEVVATSANVVKWKTNKALWHMRLGHPSSKVLSSVLPSLEDFDSCSSDLKTI-CDVC 550
Query: 197 QLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLL 256
K R SF NK F+ IH DVWGP + +S+ G Y++T +DD SR WI L+
Sbjct: 551 VRAKQTRASFSESFNKAEEC-FSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLM 609
Query: 257 KDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTP 316
+S + Q F + QF K ++ +RS+N + S S+ A GI+HQ SC +T
Sbjct: 610 LAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMS--LKSYFAERGIVHQISCVYTH 667
Query: 317 QQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLF 376
QQNG ERKHRH+++ R+LL A P FW +++L A YLI R P+ +L + PY +L+
Sbjct: 668 QQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINRTPTPILDGKTPYKILY 727
Query: 377 PKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYV 436
+ P Y LRVFGS CFA + DK R KC+F+GY QKG+R Y + F+V
Sbjct: 728 SQPPSY-ASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFV 786
Query: 437 SKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVSTQNPPQSQGNPEF 496
S+DV F ED FA + +S + V+P P+ P
Sbjct: 787 SRDVVFQEDIFPFADKKNKDTFSSPAA--------VIPSPIL---------------PYD 823
Query: 497 RQYGITYELRHVEA--PETAPIDSNDSTPKTPATNSSDSGIVPVSSPAAVPP 546
++ Y++ V A P A ID NDS P +P I+ + AA PP
Sbjct: 824 DEFLDIYQIGDVPATNPLPAIIDVNDSPPSSP--------IITATPAAASPP 867
>UniRef100_O22175 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 258 bits (659), Expect = 7e-67
Identities = 167/487 (34%), Positives = 242/487 (49%), Gaps = 31/487 (6%)
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
+T +G +Q T G S L+ VLF+ LIS+SKL + + F+
Sbjct: 399 VTKPDGKASQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCF 458
Query: 128 IQDRSTGKTIGT*FES*GLYY--------LHSHPSTICGVSASPDIIHCRLGHPSLDKLK 179
+QDR IG E G+YY +H S + S D+ H RLGHPS L
Sbjct: 459 LQDRFLRTLIGAGEEREGVYYFTGVLAPRVHKASSDF---AISGDLWHRRLGHPSTSVLL 515
Query: 180 VLVPHLSHLKSLD----CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTL 235
L + D C++C K R FP +N ++M F++IH DVWGP R ST
Sbjct: 516 SLPECNRSSQGFDKIDSCDTCFRSKQTREVFPI-SNNKTMECFSLIHGDVWGPYRTPSTT 574
Query: 236 GYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFST 295
G Y++T +DD+SR W L+ ++ + + FC+ + QFGK ++ R+DN +
Sbjct: 575 GAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTEFMCL 634
Query: 296 SFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIAC 355
+ + +HGI+HQ+SC TPQQNG ERKHRH+++ R L + P +FWG++IL A
Sbjct: 635 T--PYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTAT 692
Query: 356 YLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFL 415
+LI R PS+VL + PY LLF + P Y + LR FG C+AH ++DK ++R+ KCVF+
Sbjct: 693 HLINRTPSAVLKGKTPYELLFGERPSYDM-LRSFGCLCYAHIRPRNKDKFTSRSRKCVFI 751
Query: 416 GYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPI 475
GY +K +R Y + + S+DV F ED +A+ T S + V +PI
Sbjct: 752 GYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDDWFLPI 811
Query: 476 PLFEPFVSTQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTPKTPATNSSDSGI 535
V + N S + + I R ID + ST P S I
Sbjct: 812 ---STQVDSTNVDSSSSSSPAQSGSIDQPPR--------SIDQSPSTSTNPVPEEIGS-I 859
Query: 536 VPVSSPA 542
VP SSP+
Sbjct: 860 VPSSSPS 866
>UniRef100_Q9FJV3 Retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1475
Score = 257 bits (656), Expect = 2e-66
Identities = 144/396 (36%), Positives = 208/396 (52%), Gaps = 24/396 (6%)
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
+T G ++ GIG +L+L VL+I NL+S+S+ T+ + C I F D +
Sbjct: 474 VTLPTGSNVKIAGIGVIKLNSNLTLKNVLYIPEFRLNLLSVSQQTKDMKCKIYFDEDCCV 533
Query: 128 IQDRSTGKTIGT*FES*GLYYLHSHP--------------STICGVSASPDIIHCRLGHP 173
IQD + IG + GLY L + C + H RLGHP
Sbjct: 534 IQDPIKEQKIGRGNQIGGLYVLDTSSVECTSVDINSSVTEKQYCNAVVDSALWHSRLGHP 593
Query: 174 SLDKLKVL-----VPHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGP 228
S +K VL +P + + C CQ K +SFPS+ N S + F++IH D WGP
Sbjct: 594 SYEKNDVLHDVLGLPKRNKEDLVHCSICQKAKQKHLSFPSK-NNMSENKFDLIHIDTWGP 652
Query: 229 SRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDN 288
+T GYKY++T +DD+SR TW+ L+K ++ + F F ++TQ+G ++ +RSDN
Sbjct: 653 FATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSDN 712
Query: 289 AK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWG 348
A F + + GII SCP TPQQN V ERKH+H+++ R L+ A+ P FWG
Sbjct: 713 AP---ELRFEALYQAKGIISYHSCPETPQQNSVVERKHQHILNVARALMFEANMPLEFWG 769
Query: 349 DAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSAR 408
D IL A +LI R+P+ +L N+ P+ LL K P Y L+VFG C+ R K + R
Sbjct: 770 DCILSAVFLINRLPTPLLSNKSPFELLHLKVPDY-TSLKVFGCLCYESTSPQQRHKFAPR 828
Query: 409 AVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFE 444
A CVFLGY KGY+ + ++S+ V F+E
Sbjct: 829 ARACVFLGYPSGYKGYKLLDLETNTIHISRHVVFYE 864
>UniRef100_O23741 SLG-Sc and SLA-Sc genes and Melmoth retrotransposon sequence
[Brassica oleracea]
Length = 1131
Score = 252 bits (643), Expect = 5e-65
Identities = 147/386 (38%), Positives = 207/386 (53%), Gaps = 13/386 (3%)
Query: 67 NITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSF 126
N+ NG +++G+G ++L+ VL+I NL+SIS LT + + F S
Sbjct: 418 NVNLPNGMIVKISGVGIVQLNEHITLHNVLYIPEFRLNLLSISSLTSDIGSQVIFDVSSC 477
Query: 127 LIQDRSTGKTIGT*FES*GLYYLHSHPSTICGVSASPDII--HCRLGHPS---LDKLKVL 181
IQD + G TIG LY L S + ++A DI H RLGHPS LDK+
Sbjct: 478 AIQDPTKGWTIGQGRRVANLYVLDVKSSPM-KINAVVDISLWHKRLGHPSYTRLDKISEA 536
Query: 182 VPHLSHLKSLD--CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKY 239
+ H D C C L K ++S+ S+ N + F ++H DVWGP V + GYKY
Sbjct: 537 LGTTKHKNKGDAHCHVCHLAKQKKLSYSSQ-NHICTASFQLLHVDVWGPFSVETLEGYKY 595
Query: 240 YVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNS 299
++T +DD SR TWI LL+ +S + F TF + I+TQ+ I+ +R DNA SF
Sbjct: 596 FLTIVDDHSRATWIYLLQSKSDVLHIFPTFVNQIETQYNTKIKSVRRDNAP---ELSFTE 652
Query: 300 FMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLIT 359
GI+ SCP T +QN V ERKH+HL++ R L+ + P ++WGD +L A +LI
Sbjct: 653 LFKEKGIVSYHSCPETLEQNSVLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLIN 712
Query: 360 RMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSK 419
R PS +L N+ PY +L K P Y LR FG C+ R K R+ CVFLGY
Sbjct: 713 RTPSPLLANKSPYEVLMGKAPQY-DQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLGYPS 771
Query: 420 TQKGYRCYSPSAHRFYVSKDVTFFED 445
KGY+ +++ Y+S++VTF ED
Sbjct: 772 GYKGYKLLDLESNKIYISRNVTFHED 797
>UniRef100_Q5XWR5 Putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 251 bits (642), Expect = 7e-65
Identities = 155/430 (36%), Positives = 223/430 (51%), Gaps = 46/430 (10%)
Query: 73 GYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRS 132
G A VT G + + VL + FNL+S+SKLT+ LNC + F D F+IQD
Sbjct: 452 GDSAVVTHSGSSQLTGGDVVKNVLCVPTFQFNLLSVSKLTKELNCCVIFFPDFFIIQDLF 511
Query: 133 TGKTIGT*FES*GLYYLHSHP------STICGVSA--SPDIIHCRLGHPSLDKLKVLVPH 184
TGK E GLY H T+ + ++ H RLGH + L+ +
Sbjct: 512 TGKVKEIGEEINGLYITRPHQHHDTSKKTLAAIKGCEEAEMWHKRLGHIPMSVLRKIKMF 571
Query: 185 LSHLKSL--DCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVT 242
S K + C+ C L + VR+ FP + RS + F++IH DVWGP + ++ +Y++T
Sbjct: 572 DSPQKLVLPSCDVCPLARQVRLPFPI-SQSRSENCFDLIHLDVWGPYKAATHNKMRYFLT 630
Query: 243 FIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMA 302
+DD SR TWI L+ +S + Q F I TQFG+ I+I RSDN +F+ +
Sbjct: 631 VVDDHSRWTWIFLMHLKSDVSTVLQNFILMIDTQFGQKIKIFRSDNGTEFFNAQCDGLFK 690
Query: 303 SHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMP 362
SHGI+HQSSCPHTPQQNGV ER+H+H+++T R L H P RFWG+ +L A ++I R+P
Sbjct: 691 SHGIVHQSSCPHTPQQNGVVERRHKHILETARALRFQGHLPIRFWGECVLSAVHIINRIP 750
Query: 363 SSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQK 422
SSVL N+ P+ L++ + P + +RV G C A +L + TQK
Sbjct: 751 SSVLHNKSPFELMYKRSP-DLSYMRVIGCLCHATNLV-----------------NTSTQK 792
Query: 423 GYRCYSPSAHRFYVSKDVTFFE--------------DRP-FFASPTTSGSTTSTTSTTD- 466
GY+ Y F+VS+D+ F E D P F ASP S T +
Sbjct: 793 GYKLYDLEHQHFFVSRDMVFNEAVFPFQSPALADPHDTPVFLASPPCSSHTEDADAVQPA 852
Query: 467 -VTTSHVMPI 475
+T+ ++P+
Sbjct: 853 IITSEEIIPV 862
>UniRef100_Q9SIM3 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 251 bits (642), Expect = 7e-65
Identities = 162/458 (35%), Positives = 234/458 (50%), Gaps = 19/458 (4%)
Query: 73 GYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRS 132
G +++G+G + L VLFI NLISIS LT L + F IQD +
Sbjct: 475 GPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLT 534
Query: 133 TGKTIGT*FES*GLYYLHSHPSTICGVSASPDII--HCRLGHPSLDKLKVLVPHLS---- 186
G T+G LY L + I V+A D+ H RLGHPS +L L L
Sbjct: 535 KGLTLGEGKRIGNLYVLDTQSPAI-SVNAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRH 593
Query: 187 -HLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFID 245
+ KS C C L K ++SFPS AN S F ++H DVWGP V + GYKY++T +D
Sbjct: 594 KNKKSAYCHVCHLAKQKKLSFPS-ANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVD 652
Query: 246 DFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHG 305
D SR TWI LLK +S + F F ++ Q+ ++ +RSDNAK +F F + G
Sbjct: 653 DHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAK---ELAFTEFYKAKG 709
Query: 306 IIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSV 365
I+ SCP TP+QN V ERKH+H+++ R L+ ++ +WGD +L A +LI R PS++
Sbjct: 710 IVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSAL 769
Query: 366 LGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYR 425
L N+ P+ +L K P Y L+ FG C++ S R K R+ CVFLGY KGY+
Sbjct: 770 LSNKTPFEVLTGKLPDY-SQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYK 828
Query: 426 CYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVSTQ 485
++ ++S++V F E+ AS S S T+ +DV T + P+ S
Sbjct: 829 LLDLESNVVHISRNVEFHEELFPLAS-----SQQSATTASDVFTP-MDPLSSGNSITSHL 882
Query: 486 NPPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTP 523
PQ + + + IT H++ ++ +DS P
Sbjct: 883 PSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHP 920
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.342 0.151 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,682,580,929
Number of Sequences: 2790947
Number of extensions: 67354047
Number of successful extensions: 289978
Number of sequences better than 10.0: 1112
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 285340
Number of HSP's gapped (non-prelim): 2532
length of query: 1105
length of database: 848,049,833
effective HSP length: 138
effective length of query: 967
effective length of database: 462,899,147
effective search space: 447623475149
effective search space used: 447623475149
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 80 (35.4 bits)
Medicago: description of AC147007.6