BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147000.7 - phase: 0 
         (1185 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6L3L8 Putative polyprotein [Solanum demissum]             1343  0.0
UniRef100_Q8H7V4 Putative polyprotein from transposon TNT [Oryza...  1136  0.0
UniRef100_Q8RU93 Putative polyprotein from transposon TNT 1-94 [...  1135  0.0
UniRef100_Q7XML8 OSJNBa0040D17.9 protein [Oryza sativa]              1135  0.0
UniRef100_Q7XW90 OSJNBb0043H09.7 protein [Oryza sativa]              1134  0.0
UniRef100_Q75J10 Putative gag and pol protein [Oryza sativa]         1134  0.0
UniRef100_Q65XF0 Putative polyprotein [Oryza sativa]                 1134  0.0
UniRef100_Q8LJ12 Putative gag and pol [Oryza sativa]                 1132  0.0
UniRef100_Q6L5B9 Putative polyprotein [Oryza sativa]                 1131  0.0
UniRef100_Q9S7F1 Similar to Oryza australiensis retrotransposon ...  1130  0.0
UniRef100_Q84ME8 Putative polyprotein [Oryza sativa]                 1129  0.0
UniRef100_Q7X7X3 OSJNBb0112E13.7 protein [Oryza sativa]              1126  0.0
UniRef100_Q7XVB4 OSJNBa0072D21.4 protein [Oryza sativa]              1122  0.0
UniRef100_Q5W6C4 Putative polyprotein [Oryza sativa]                 1121  0.0
UniRef100_Q8S7H7 Putative polyprotein [Oryza sativa]                 1120  0.0
UniRef100_Q9FWU0 Putative gag-pol polyprotein [Oryza sativa]         1113  0.0
UniRef100_Q7GCB4 Polyprotein [Oryza sativa]                          1112  0.0
UniRef100_Q84RZ7 Hypothetical polyprotein [Oryza sativa]             1107  0.0
UniRef100_Q75GS3 Putative integrase [Oryza sativa]                   1107  0.0
UniRef100_Q8LSK0 Gag and Pol [Zea mays]                              1107  0.0

>UniRef100_Q6L3L8 Putative polyprotein [Solanum demissum]
          Length = 1279

 Score = 1343 bits (3476), Expect = 0.0
 Identities = 680/1198 (56%), Positives = 857/1198 (70%), Gaps = 67/1198 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M D+KSV  Q+ +   I  E+ +E + + +   +  I+DKLPP+WK+F+  +RHK KE S
Sbjct: 135  MVDNKSVVDQAQDFIMIVGELRSEEVKIGDNLIVCGIVDKLPPSWKEFQKTMRHKQKETS 194

Query: 61   LESLITRLRIEEEARKQE---QNEEV-------FVVSNNNTKKKFVGAVLKPAGKPFKNQ 110
            LE+LI ++R+EEEAR Q+   Q EE         + SNN T +      LKP  K FK  
Sbjct: 195  LETLIMKIRMEEEARGQDALLQTEENNITTKVNLITSNNATPESHKNTSLKPKKKKFKKN 254

Query: 111  N-RPMNKNSNRNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAH 169
            N RP  KN+  N    N + Q + P          C+ CG++ H+AR CR R   P    
Sbjct: 255  NGRPPKKNNGENIQAQNQQVQDKGP----------CFVCGKSGHIARFCRFRKRGPNPQA 304

Query: 170  MATDAAPDEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQK-VLLGD 228
              T+    EP+VA+IT+INM+   DGWW D+GA+RHVCYD+D FK YT  ++ K ++LGD
Sbjct: 305  NVTE----EPFVAVITDINMVENVDGWWADSGANRHVCYDKDWFKKYTHFEEPKTIMLGD 360

Query: 229  SHSTDVVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTIT 288
            SH+T V+G GD+EL FTS + L LKDVL+TP +RK L+S FLLNKAGF Q I ++ Y I 
Sbjct: 361  SHTTQVLGTGDVELCFTSGRVLTLKDVLYTPSMRKKLMSSFLLNKAGFKQIIESNQYVIV 420

Query: 289  KNGIFVGKGYATDGMFKLNIDMNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIP 348
            K GIFVGKGYA DGMFKLN++MNK S+S YML   N WH+RLCH+N R +  MS LGLIP
Sbjct: 421  KKGIFVGKGYACDGMFKLNVEMNKTSTSVYMLSSTNFWHARLCHINDRYVGIMSSLGLIP 480

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVTRITEPFELIHSDLCELDGNLTRNGKRYFITFID 408
             I  N FEKC+ CS+AKI K  H  V R T+  EL+H+D+CEL G LTR G RYFITFID
Sbjct: 481  MIKKN-FEKCEACSKAKITKRPHFQVERKTDLLELVHTDICELGGILTRGGNRYFITFID 539

Query: 409  DCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELG 468
            D S +T+VYLM+NK++A + FK Y+ E+ENQF  +IKR RSDRG EY S+ FN + + LG
Sbjct: 540  DFSKFTYVYLMKNKSDAFENFKTYLHEVENQFGRKIKRIRSDRGREYESNEFNSFVRSLG 599

Query: 469  IIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTK 528
            IIHETT PYSP  NG AERKNRT  EL  A ++ S A  ++WGE +LT CYVLNRVP  K
Sbjct: 600  IIHETTPPYSPSSNGVAERKNRTLVELTNAMLIESHAPLNFWGEAILTACYVLNRVPHKK 659

Query: 529  NKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY 588
            +K++P+E+ K  +P+L Y R WGCLA+VR  DPK  KL  +   CAF+GYA NS AYRF+
Sbjct: 660  SKLTPFELWKGYKPSLGYLRVWGCLAFVRLMDPKITKLGKKVTTCAFLGYASNSTAYRFF 719

Query: 589  DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNENIERDVIEPG 648
            +L+   +IES D  F+ENKFPF S +SGG     + ++L  PS   ++ +N E +  E  
Sbjct: 720  NLEDNIVIESGDAIFHENKFPFDSKNSGGQR--IEQNILTLPSSSTSTLKNKEVNDFELR 777

Query: 649  RGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDEMDSLMSNETWHLTD 708
            R KRAR+ K++GP++  + + +D  ++KEALSS D+  W+EA+NDEM+SL+SN+TW L D
Sbjct: 778  RSKRARVEKDFGPDFYVFNVGDDRLTLKEALSSHDSIFWKEAVNDEMESLISNKTWKLVD 837

Query: 709  LPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYSPVTRITSIRVL 768
            LPPGCKTIGCKW+L+KKLKPDGSIDKYKARLVAKGF+Q E ++FFDT+SPVTRITSIR+L
Sbjct: 838  LPPGCKTIGCKWVLRKKLKPDGSIDKYKARLVAKGFKQLEGLEFFDTFSPVTRITSIRLL 897

Query: 769  ISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKVCKLDKSLYGLKQAP 828
            I++AAI +L +HQMDVKTAFLNG+L EEIYMDQPE FV  GQE+KVCKL KSLYGLKQAP
Sbjct: 898  IAMAAIFDLQIHQMDVKTAFLNGDLNEEIYMDQPESFVEAGQESKVCKLTKSLYGLKQAP 957

Query: 829  KQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGSNLNAIKDVKSL 888
            KQWHEKFD+ MIEN FK NE DKCIY K  NN+  IICLYVDDLLIFGSN+N I + K++
Sbjct: 958  KQWHEKFDSCMIENGFKTNECDKCIYHKSWNNSHVIICLYVDDLLIFGSNINVIDETKNI 1017

Query: 889  LCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKILRKYNYFYCKPASTPCDPSVK 948
            L  +FDMKDLG+A+VILGIKITRT +GI L+QSHYVEKIL+KYN+  CK  +TP D SV 
Sbjct: 1018 LRSHFDMKDLGEANVILGIKITRTCDGIFLDQSHYVEKILKKYNFLDCKHVATPFDSSVH 1077

Query: 949  LF--KNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSRPSMEHWQAIERVM 1006
            LF  ++  D + Q EYASIIGSLRY TDCTRPDI+YAVG+L +FTS+P  EHW A+ RVM
Sbjct: 1078 LFPVESENDVINQKEYASIIGSLRYVTDCTRPDIAYAVGVLGRFTSKPGNEHWHAVTRVM 1137

Query: 1007 RYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAGGAVSWKSKKQTIL 1066
            RYL  T   G                                    GGA+ W+SKKQTI+
Sbjct: 1138 RYLIGTKNCG------------------------------------GGAICWRSKKQTII 1161

Query: 1067 AQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTAAIAKIENRYYNGK 1126
            A STME+E+IALA+ASEEA+WLR LL ++P +E+P+P +LIHC+STAAI +++NRYYNGK
Sbjct: 1162 ANSTMEAELIALASASEEANWLRDLLFQLPYFEKPIPPILIHCNSTAAIGRVQNRYYNGK 1221

Query: 1127 RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVANTSSRMGLMPIDH 1184
             R IRRKHS +R YL+NGT+ VD+V++  NLADPLTK L REKV +TS  MGL PI+H
Sbjct: 1222 SRPIRRKHSNVRSYLTNGTINVDYVKSCNNLADPLTKALTREKVWSTSRGMGLKPINH 1279


>UniRef100_Q8H7V4 Putative polyprotein from transposon TNT [Oryza sativa]
          Length = 1911

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 591/1218 (48%), Positives = 790/1218 (64%), Gaps = 61/1218 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTFAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+N+  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ N   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPIDH 1184
            R  + N S  MGL PI +
Sbjct: 1287 RNVIDNASKEMGLRPISN 1304


>UniRef100_Q8RU93 Putative polyprotein from transposon TNT 1-94 [Oryza sativa]
          Length = 1302

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 590/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+N+  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ N   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>UniRef100_Q7XML8 OSJNBa0040D17.9 protein [Oryza sativa]
          Length = 1319

 Score = 1135 bits (2936), Expect = 0.0
 Identities = 591/1216 (48%), Positives = 787/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + RI R RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRRINRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  YVLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNYVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+ +ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL PI
Sbjct: 1287 RNVIDNASKEMGLRPI 1302


>UniRef100_Q7XW90 OSJNBb0043H09.7 protein [Oryza sativa]
          Length = 1302

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 592/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKSSKCHSCVQSKQPRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  EIENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEIENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  SEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EAI  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAICSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +I   F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LG HY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>UniRef100_Q75J10 Putative gag and pol protein [Oryza sativa]
          Length = 1302

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 590/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVL 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>UniRef100_Q65XF0 Putative polyprotein [Oryza sativa]
          Length = 1391

 Score = 1134 bits (2932), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 789/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 203  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 262

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 263  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 316

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 317  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 366

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 367  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 426

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 427  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 486

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 487  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 545

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 546  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 605

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 606  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 665

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNR+P  
Sbjct: 666  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRIPNR 725

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 726  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 785

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 786  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 835

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 836  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 895

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 896  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 955

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 956  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 1015

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 1016 EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 1075

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 1076 YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1135

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1136 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1195

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1196 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1255

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1256 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1315

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1316 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1375

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1376 RNVIDNASKEMGLRPM 1391


>UniRef100_Q8LJ12 Putative gag and pol [Oryza sativa]
          Length = 1302

 Score = 1132 bits (2928), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 788/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP +F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPNKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEYTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E+ DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKT FLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EDEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTVFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>UniRef100_Q6L5B9 Putative polyprotein [Oryza sativa]
          Length = 1302

 Score = 1131 bits (2926), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 790/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLP +W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPSSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S ++  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKDDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCSQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+TFI
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG A+RKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAKRKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKHKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY RYPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTRYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+ +PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKLVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>UniRef100_Q9S7F1 Similar to Oryza australiensis retrotransposon RIRE1 [Oryza sativa]
          Length = 1302

 Score = 1130 bits (2922), Expect = 0.0
 Identities = 586/1206 (48%), Positives = 789/1206 (64%), Gaps = 41/1206 (3%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+TFI
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GII+E T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIYEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSG-GTDNSVLDQPSEIITSNEN 639
              +KS+       TI+ES D  F+E+ FP K   SG N       S +  P +   ++E 
Sbjct: 697  LIVKSEVPDMHVGTIMESRDAIFFESFFPMKDTHSGSNQPFEIIPSSITPPEQTEHTHEL 756

Query: 640  I-ERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDEMDS 697
            + E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W+EA+  EMDS
Sbjct: 757  VSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDS 816

Query: 698  LMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYS 757
            +++N TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFDTYS
Sbjct: 817  IIANGTWEVIERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYS 876

Query: 758  PVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKVCKL 817
            PV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+ GQE KVCKL
Sbjct: 877  PVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQERKVCKL 936

Query: 818  DKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGS 877
             KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CLYVDD+LIFG+
Sbjct: 937  LKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGT 996

Query: 878  NLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKILRKYNYFYCK 937
            NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKIL ++ Y   K
Sbjct: 997  NLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSK 1056

Query: 938  PASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSRPSME 997
            P+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L +FTS P  +
Sbjct: 1057 PSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDD 1116

Query: 998  HWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAGGAVS 1057
            HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY+F++ GGAVS
Sbjct: 1117 HWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVS 1176

Query: 1058 WKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTAAIAK 1117
            W+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+   I K
Sbjct: 1177 WRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVK 1236

Query: 1118 IENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVANTSSR 1176
            + +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+R  + N S  
Sbjct: 1237 VNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKE 1296

Query: 1177 MGLMPI 1182
            MGL PI
Sbjct: 1297 MGLRPI 1302


>UniRef100_Q84ME8 Putative polyprotein [Oryza sativa]
          Length = 1302

 Score = 1129 bits (2921), Expect = 0.0
 Identities = 589/1216 (48%), Positives = 787/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDT A+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTRANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL P+
Sbjct: 1287 RNVIDNASKEMGLRPM 1302


>UniRef100_Q7X7X3 OSJNBb0112E13.7 protein [Oryza sativa]
          Length = 1342

 Score = 1126 bits (2913), Expect = 0.0
 Identities = 586/1217 (48%), Positives = 789/1217 (64%), Gaps = 61/1217 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S ++  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKSDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  WWVDTGA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGLGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+W+SRLCH+N  ++S +S + LIP
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWYSRLCHINFGLMSRLSSMCLIP 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K S+    KC  C Q+K  ++ HK+   R   P EL+HSDL E++G LT+ GKRYF+T I
Sbjct: 457  KFSIVKGSKCHSCVQSKQPRKPHKAAEKRNLAPLELLHSDLYEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATTFCYVYLLKMKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVLDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N  W +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGIWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSP+ R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPIARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGKGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNNRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ER+MRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERIMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPID 1183
            R  + N S  MGL PI+
Sbjct: 1287 RNVIDNASKEMGLRPIE 1303


>UniRef100_Q7XVB4 OSJNBa0072D21.4 protein [Oryza sativa]
          Length = 1319

 Score = 1122 bits (2902), Expect = 0.0
 Identities = 587/1216 (48%), Positives = 785/1216 (64%), Gaps = 61/1216 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M+D++SV  Q+HE+Q +A E+      LP++F    II KLPP+W+ F + L+HK +E+S
Sbjct: 114  MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 173

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +E LI  L +EE+AR+++        S  +  +     V K   K           N  +
Sbjct: 174  VEGLIASLDVEEKAREKD------AASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKK 227

Query: 121  NKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAP---- 176
             K  NN+  Q ++           C+ CGQ  H+ARKC  R    A A   + +A     
Sbjct: 228  QKKNNNNPNQDER----------TCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIG 277

Query: 177  ---DEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTD 233
               D      +  +  +  S  W VD GA+ HVC D  +F +Y       VL+G+     
Sbjct: 278  NTGDGSGYGNLPTVFSVNQSTNWRVDIGANVHVCADISLFSSYQVARGSTVLMGNGSHAS 337

Query: 234  VVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIF 293
            V G+G ++LKFTS K + LK+V H P I +NLVSG  L + GF     ++   ++K+G F
Sbjct: 338  VHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYF 397

Query: 294  VGKGYATDGMFKLNIDMNKISSSAYMLC-----DFNIWHSRLCHVNKRIISNMSGLGLIP 348
            +GKGY   G+F+ ++  +  + S   +C     + N+WHSRLCH+N  ++S +S + LI 
Sbjct: 398  IGKGYECGGLFRFSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIS 456

Query: 349  KISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYFITFI 407
            K  +    KC  C Q+K  ++ HK+   R   P EL+HSDLCE++G LT+ GKRYF+T I
Sbjct: 457  KFYIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLI 516

Query: 408  DDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKEL 467
            DD + + +VYL++ K+EALD FK Y  E+ENQ + +IKR RSDRG E+ S+ F+ + +E 
Sbjct: 517  DDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEH 576

Query: 468  GIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKT 527
            GIIHE T PYSPE NG AERKNRT T+LV A +  +G    WWGE LLT  +VLNRVP  
Sbjct: 577  GIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNR 636

Query: 528  KNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRF 587
                +PYEI   R+P+LSY RTWGCLA V  P  K+ KL  +  +C F+GYA +S AYRF
Sbjct: 637  NKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRF 696

Query: 588  YDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITSNEN- 639
              +KS+       TI+ES D  F+E+ FP K   SG N          QPSEII S+   
Sbjct: 697  LIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSN----------QPSEIIPSSITP 746

Query: 640  -----------IERDVIE-PGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLW 687
                        E DV E P R KR R AK +G ++  Y +++ P SI EA +S DAD W
Sbjct: 747  PEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYW 806

Query: 688  QEAINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQR 747
            +EA+  EMDS+++N TW +T+ P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+
Sbjct: 807  KEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866

Query: 748  ENVDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVI 807
            E  DFFDTYSPV R+T+IRVL+SLAA H L+VHQMDVKTAFLNGEL+EEIYMDQP+GFV+
Sbjct: 867  EGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVV 926

Query: 808  HGQENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICL 867
             GQE KVCKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y ++      I+CL
Sbjct: 927  EGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCL 986

Query: 868  YVDDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKI 927
            YVDD+LIFG+NL  I +VKS L  NFDMKDLG ADVIL IK+ R +NGI+L QSHYVEKI
Sbjct: 987  YVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKI 1046

Query: 928  LRKYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLL 987
            L ++ Y   KP+ TP DPS+ L KN   +  Q EY+ IIGSL Y    TRPDIS+AV  L
Sbjct: 1047 LNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKL 1106

Query: 988  CKFTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGY 1047
             +FTS P  +HW+A+ERVMRYLK T+ LGLHY  YPAVLEGYSD++W +  D+ KATSGY
Sbjct: 1107 SRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGY 1166

Query: 1048 IFSIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLI 1107
            +F++ GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L+
Sbjct: 1167 VFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILM 1226

Query: 1108 HCDSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLN 1166
            +CD+   I K+ +   N K  R ++R+  ++R+  ++G + +D+++T  NLADP TKGL+
Sbjct: 1227 NCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLS 1286

Query: 1167 REKVANTSSRMGLMPI 1182
            R  + N S  MGL PI
Sbjct: 1287 RNVIDNASKEMGLRPI 1302


>UniRef100_Q5W6C4 Putative polyprotein [Oryza sativa]
          Length = 1268

 Score = 1121 bits (2899), Expect = 0.0
 Identities = 577/1209 (47%), Positives = 791/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 84   MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 143

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 144  VPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 194

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +   K D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 195  KPKAATNFKKKSKGKAKGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 248

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G 
Sbjct: 249  YGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGT 308

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL + GF     ++   ++K G FVGKGY 
Sbjct: 309  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYD 368

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 369  SGGLFRFSLNDMCNNHNAVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 424

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT+ GK+YF T IDDC
Sbjct: 425  LVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFTTLIDDC 484

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 485  TRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 544

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 545  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKE 604

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 605  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 664

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEII--------T 635
                 D+   TI+ES D  F+EN+FP K   S      T +     P E          T
Sbjct: 665  NSGVPDMHVGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEHFAPIEHNDQT 718

Query: 636  SNENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+AK +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 719  PEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSE 778

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 779  MDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 838

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 839  TYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMV 898

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 899  CKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 958

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y
Sbjct: 959  FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGY 1018

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1019 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1078

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  +HWQA+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ G
Sbjct: 1079 PGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGG 1138

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1139 GAVSWKSCKQTILTRSTMETELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQT 1198

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL R  + +
Sbjct: 1199 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVITLDYVQTARNLADQFTKGLPRNVIDS 1258

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1259 ASREMGLIP 1267


>UniRef100_Q8S7H7 Putative polyprotein [Oryza sativa]
          Length = 1394

 Score = 1120 bits (2896), Expect = 0.0
 Identities = 576/1209 (47%), Positives = 790/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 210  MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFS 269

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 270  VPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 320

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +   K D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 321  KPKAATNFKKKSKGKAKGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 374

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G 
Sbjct: 375  YGKILPRVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGT 434

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL + GF     ++   ++K G FVGKGY 
Sbjct: 435  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYD 494

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 495  SGGLFRFSLNDMCNNHNVVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 550

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT+ GK+YF+T IDDC
Sbjct: 551  LVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDC 610

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 611  TRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 670

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 671  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVLTACHVLNKIPMKHKE 730

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 731  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 790

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITS------- 636
                 D+   TI+ES D  F+EN+FP K   S      T +     P E  T        
Sbjct: 791  NSGVPDMHVGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEHFTPIEHNDQT 844

Query: 637  -NENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+ K +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 845  PEENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSE 904

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 905  MDSIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 964

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 965  TYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMV 1024

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 1025 CKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 1084

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y
Sbjct: 1085 FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGY 1144

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1145 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1204

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  +HWQA+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ G
Sbjct: 1205 PGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGG 1264

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A  EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1265 GAVSWKSCKQTILTRSTMEAELTALDTAIVEAEWLRELLMDLPVVEKPVPAILMNCDNQT 1324

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL R  + +
Sbjct: 1325 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDS 1384

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1385 ASREMGLIP 1393


>UniRef100_Q9FWU0 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1408

 Score = 1113 bits (2880), Expect = 0.0
 Identities = 576/1209 (47%), Positives = 790/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 224  MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 283

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 284  VPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 334

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +   K D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 335  KPKAATNFKKKSKGKAKGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 388

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G 
Sbjct: 389  YGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGT 448

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL +  F     ++   ++K G FVGKGY 
Sbjct: 449  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYGTFVGKGYD 508

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 509  SGGLFRFSLNDMCNNHNAVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 564

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P ELIHSDLCE++G LT+ GK+YF+T IDDC
Sbjct: 565  LVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFMTLIDDC 624

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 625  TRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 684

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 685  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKE 744

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 745  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 804

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEII--------T 635
                 D+   TI+ES D  F+EN+FP K   S      T +     P E          T
Sbjct: 805  NSGVPDMHVGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEHFAPIEHNDQT 858

Query: 636  SNENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+AK +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 859  PEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSE 918

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK IGCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 919  MDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 978

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 979  TYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMV 1038

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 1039 CKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 1098

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y
Sbjct: 1099 FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGY 1158

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1159 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1218

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  +HW+A+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ G
Sbjct: 1219 PGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGG 1278

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1279 GAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQI 1338

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL    + +
Sbjct: 1339 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPCNVIDS 1398

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1399 ASREMGLIP 1407


>UniRef100_Q7GCB4 Polyprotein [Oryza sativa]
          Length = 1268

 Score = 1112 bits (2877), Expect = 0.0
 Identities = 573/1209 (47%), Positives = 789/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 84   MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 143

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 144  VLDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 194

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +     D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 195  KPKAATNFKKKSKGKANGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 248

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G 
Sbjct: 249  YGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGT 308

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL +  F     ++   ++K   FVGKGY 
Sbjct: 309  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYETFVGKGYD 368

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 369  SGGLFRFSLNDMCNNHNAVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 424

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT+ GK+YF+T IDDC
Sbjct: 425  LVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDC 484

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 485  TRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 544

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 545  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKE 604

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 605  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 664

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEII--------T 635
                 D+   TI+ES D  F+EN+FP K   S      T +     P E          T
Sbjct: 665  NSGVPDMHVGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEYFAPIEHNDQT 718

Query: 636  SNENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+AK +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 719  PEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSE 778

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 779  MDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 838

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 839  TYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMV 898

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWH+KFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 899  CKLLKSLYGLKQAPKQWHKKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 958

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y
Sbjct: 959  FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGY 1018

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1019 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1078

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  +HWQA+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ G
Sbjct: 1079 PGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGG 1138

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1139 GAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQT 1198

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL R  + +
Sbjct: 1199 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDS 1258

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1259 ASREMGLIP 1267


>UniRef100_Q84RZ7 Hypothetical polyprotein [Oryza sativa]
          Length = 1268

 Score = 1107 bits (2864), Expect = 0.0
 Identities = 570/1199 (47%), Positives = 781/1199 (64%), Gaps = 33/1199 (2%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +  E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 84   MVDDRSVVEQAHEIQMLVKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 143

Query: 61   LESLITRLRIEEEARKQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSNR 120
            +  LI  L IEE+AR ++           N  KK  G     +      +  P   ++N 
Sbjct: 144  VTDLIGSLGIEEKARAKD-----------NRGKKIEGG----SSANLVQKKNPHASHNNN 188

Query: 121  NKTGNNSRPQIQQ--PPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDE 178
             K   + +P+       K       +C+ CG+  H A+ C  R ++ +   + ++     
Sbjct: 189  KKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDCPERKDKKSANMVISEDGGTL 248

Query: 179  PYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIG 238
             Y   +  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+G+     V G+G
Sbjct: 249  GYGKFLPTVLSVCHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVG 308

Query: 239  DIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGY 298
             ++LKFTS K + LK+V H P I+KNLVSG LL + GF     ++   ++K G F+GKGY
Sbjct: 309  TVDLKFTSGKIVQLKNVQHVPSIKKNLVSGSLLCRDGFRLVFESNKCVVSKYGTFIGKGY 368

Query: 299  ATDGMFKLNID--MNKISSSAYMLCD-FNIWHSRLCHVNKRIISNMSGLGLIPKISLNDF 355
             + G+F+ ++D   NK+ +      D  N+WHSRLCHVN   ++ ++ + LIPK +L   
Sbjct: 369  DSGGLFRFSLDDMCNKVVNHVSDDDDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKG 428

Query: 356  EKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDCSDYT 414
             KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT+ GK+YF+T IDDC+ + 
Sbjct: 429  SKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFC 488

Query: 415  HVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGIIHETT 474
            +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GIIHE T
Sbjct: 489  YVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFTSFCEEYGIIHERT 548

Query: 475  APYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNKISPY 534
             PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLNR+P    +++P+
Sbjct: 549  PPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAILTACHVLNRIPTKHKEVTPF 608

Query: 535  EILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY------ 588
            E  ++++ NLS+ RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF       
Sbjct: 609  EEWERKKLNLSHLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGV 668

Query: 589  -DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEII--TSNENIERD-V 644
             D++  TI ES D  F+EN+FP K+  S  +     +     P E I  T  EN E D +
Sbjct: 669  PDMRVGTITESRDATFFENEFPMKNAPSTSSQEPILSPEHFVPIEHIDQTLEENPEEDNI 728

Query: 645  IEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDEMDSLMSNETW 704
            +   + KR R AK +G +Y+ Y +++ P +I+EA SS DAD W+EA+  EMDS+MSN TW
Sbjct: 729  VATRKSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTW 788

Query: 705  HLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFDTYSPVTRITS 764
             + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFDTYSPV R+T+
Sbjct: 789  EVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTT 848

Query: 765  IRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKVCKLDKSLYGL 824
            IRVL++LAA H L+VHQMDVKTAFLNGELEEEIYMDQP+G+V+ GQE  VCKL KSLYGL
Sbjct: 849  IRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGL 908

Query: 825  KQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLIFGSNLNAIKD 884
            KQAPKQWHEKFDN +    F VNE+DKC+Y +Y      I+CLYVDD+LIFG++LN I++
Sbjct: 909  KQAPKQWHEKFDNTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEE 968

Query: 885  VKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNYFYCKPASTPC 943
            VK  L  +F+MKDLG ADVIL IK+ R D  GI+L QSHYV+K+L ++ Y  CK A TP 
Sbjct: 969  VKDFLSKSFEMKDLGVADVILNIKLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPTPY 1028

Query: 944  DPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSRPSMEHWQAIE 1003
            DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S P  +HW A+E
Sbjct: 1029 DPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSQFVSNPGDDHWHALE 1088

Query: 1004 RVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAGGAVSWKSKKQ 1063
            RVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY+F++ GGAVSWKS KQ
Sbjct: 1089 RVMRYLKGTMSYGIHYAGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAVSWKSCKQ 1148

Query: 1064 TILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTAAIAKIENRYY 1123
            TIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+   I K+ +   
Sbjct: 1149 TILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQTVIIKVNSSKD 1208

Query: 1124 NGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVANTSSRMGLMP 1181
            N K  R ++R+  ++R+  ++G + +D+V+T +NLAD  TKGL R  +   S  MGL P
Sbjct: 1209 NMKSSRHVKRRLKSVRKQKNSGVIALDYVQTAKNLADQFTKGLPRNVIDCASREMGLRP 1267


>UniRef100_Q75GS3 Putative integrase [Oryza sativa]
          Length = 1456

 Score = 1107 bits (2862), Expect = 0.0
 Identities = 572/1209 (47%), Positives = 786/1209 (64%), Gaps = 53/1209 (4%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M DD+SV  Q+HE+Q +A E+      LP++F    II KLPP+W DF + L+HK +EFS
Sbjct: 272  MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFS 331

Query: 61   LESLITRLRIEEEAR-KQEQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRPMNKNSN 119
            +  LI  L +EE+AR K  + ++V   S+ N  +K           P  + N    K   
Sbjct: 332  VPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQK---------KNPHASHNNKKVKPDV 382

Query: 120  RNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQAHMATDAAPDEP 179
            + K   N + + +   K D      C+ CG++ H A+ C  R +R +   + ++      
Sbjct: 383  KPKAATNFKKKGKGKAKGD------CFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSG 436

Query: 180  YVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSHSTDVVGIGD 239
            Y  ++  +  +  S  WWVDTGA+ HVC D  +F +Y       +L+ +     V G+G 
Sbjct: 437  YGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMVNGSLAAVHGVGT 496

Query: 240  IELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKNGIFVGKGYA 299
            ++LKFTS KT+ LK+V H P I+KNLVSG LL + GF     ++   ++K G FVGKGY 
Sbjct: 497  VDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYGTFVGKGYD 556

Query: 300  TDGMFKLNID--------MNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGLGLIPKIS 351
            + G+F+ +++        +N IS +     + N+WHSRLCHVN   ++ ++ + LIPK +
Sbjct: 557  SGGLFRFSLNDMCNNHNAVNHISEND----ESNVWHSRLCHVNFGCMTRLANMSLIPKFT 612

Query: 352  LNDFEKCQFCSQAKINKESHK-SVTRITEPFELIHSDLCELDGNLTRNGKRYFITFIDDC 410
            L    KC  C Q+K  ++ HK S  R   P EL+HSDLCE++G LT  GK+YF+T IDDC
Sbjct: 613  LVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTNGGKKYFMTLIDDC 672

Query: 411  SDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEYYKELGII 470
            + + +VYL++ K+EAL  FK Y  E+ENQ   +IKR RSDRG EY S+ F  + +E GII
Sbjct: 673  TRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGII 732

Query: 471  HETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNRVPKTKNK 530
            HE T PYSP+ NG AERKNRT TE+V A +  +G +  WWGE +LT C+VLN++P    +
Sbjct: 733  HEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKE 792

Query: 531  ISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSKAYRFY-- 588
            ++P+E  ++++ NLSY RTWGCLA V  P  K+ KL  +  +C F+GYA++S  YRF   
Sbjct: 793  VTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIV 852

Query: 589  -----DLKSKTIIESNDVDFYENKFPFKSGDSGGNSGGTDNSVLDQPSEIITS------- 636
                 D+ + TI+ES D  F+EN+FP K   S      T +     P E           
Sbjct: 853  NSGVPDMHAGTILESRDATFFENEFPMKYTPS------TSSKETVMPHEHFAPIEHDDQM 906

Query: 637  -NENIERD-VIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQEAINDE 694
              EN E D +++  + KR R+AK +G +Y+ Y +++ P +I+EA SS DAD W+EA+  E
Sbjct: 907  PEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSE 966

Query: 695  MDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQRENVDFFD 754
            MDS+MSN TW + + P GCK +GCKW+ KKKL+PDG+I+KYKARLVAKG+ Q+E  DFFD
Sbjct: 967  MDSIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 1026

Query: 755  TYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHGQENKV 814
            TYSPV R+T+IRVL++LAA H L+VHQMDVK AFLNGELEEEIYMDQP+G+V+ GQE  V
Sbjct: 1027 TYSPVARLTTIRVLLALAASHGLLVHQMDVKIAFLNGELEEEIYMDQPDGYVLEGQEGMV 1086

Query: 815  CKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYVDDLLI 874
            CKL KSLYGLKQAPKQWHEKFD  +    F VNE+DKC+Y +Y      I+CLYVDD+LI
Sbjct: 1087 CKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILI 1146

Query: 875  FGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTD-NGISLNQSHYVEKILRKYNY 933
            FG++LN I++VK  L  +F+MKDLG+ADVIL I + R D  GI+L QSHYV+K+L ++ Y
Sbjct: 1147 FGTSLNVIEEVKDYLSKSFEMKDLGEADVILNINLQRGDEGGITLVQSHYVDKVLSRFGY 1206

Query: 934  FYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCKFTSR 993
              CKPA TP DPSV L KN   +  Q  Y+ IIGSL Y    TRPDIS+AV  L +F S 
Sbjct: 1207 SDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSN 1266

Query: 994  PSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIFSIAG 1053
            P  + WQA+ERVMRYLK TM+ G+HY  YP VLEGYSD++W + +D+ KATSGY F++ G
Sbjct: 1267 PGDDQWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYAFTLGG 1326

Query: 1054 GAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHCDSTA 1113
            GAVSWKS KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++CD+  
Sbjct: 1327 GAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQT 1386

Query: 1114 AIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNREKVAN 1172
             I K+ +   N K  R I+R+  ++R+  ++G + +D+V+T  NLAD  TKGL R  + +
Sbjct: 1387 VIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPRNVIDS 1446

Query: 1173 TSSRMGLMP 1181
             S  MGL+P
Sbjct: 1447 ASREMGLIP 1455


>UniRef100_Q8LSK0 Gag and Pol [Zea mays]
          Length = 1264

 Score = 1107 bits (2862), Expect = 0.0
 Identities = 573/1213 (47%), Positives = 791/1213 (64%), Gaps = 64/1213 (5%)

Query: 1    MSDDKSVEAQSHELQQIAHEIIAEGMALPEQFQIAVIIDKLPPAWKDFKSLLRHKTKEFS 60
            M D++S+  Q+HE+Q IA E+    + LP++F    II KLP  W++F + L+HK +E S
Sbjct: 83   MVDNRSIVEQAHEIQCIAKELDHLKIVLPDRFVAGCIIAKLPSTWRNFATALKHKRQEIS 142

Query: 61   LESLITRLRIEEEARKQ-------EQNEEVFVVSNNNTKKKFVGAVLKPAGKPFKNQNRP 113
            +E+LI  L +EE+AR +       E +    +V  N+ K K         GKP    N+P
Sbjct: 143  VENLIASLDVEEKARAKDTGSKGGEGHSSANMVQKNHNKGK---------GKP--KSNKP 191

Query: 114  MNKNSNRNKTGNNSRPQIQQPPKNDAAPPFNCYNCGQADHMARKCRNRTNRPAQ---AHM 170
             NK +N  K  N +                 C+ CG+A H A+ C +R +R  +    + 
Sbjct: 192  -NKTTNFKKKKNKAE--------------LTCFACGEAGHFAKDCPDRADRRGKKGNVNT 236

Query: 171  ATDAAPDEPYVAMITEINMIAGSDGWWVDTGASRHVCYDRDMFKTYTACDDQKVLLGDSH 230
               +  ++     +  I  +  S  WW+DTGA+ HVC D ++F +Y    D  VL+G+  
Sbjct: 237  VIASNEEDKGYGNLPFIFSVFQSPSWWLDTGANVHVCSDINLFSSYQGARDSSVLMGNGS 296

Query: 231  STDVVGIGDIELKFTSEKTLILKDVLHTPKIRKNLVSGFLLNKAGFTQSIGADLYTITKN 290
               V G G ++LKFTS K + LK+V H P I KNLVSG LL + GF   + ++   ++K+
Sbjct: 297  HASVHGTGTVDLKFTSGKIVQLKNVHHVPSIHKNLVSGTLLCRDGFKVVLESNKLVVSKS 356

Query: 291  GIFVGKGYATDGMFKLNI------DMNKISSSAYMLCDFNIWHSRLCHVNKRIISNMSGL 344
            G F+GKGY   G+F+ ++       +N I ++   L   +IWHSRLCH+N   +S ++ +
Sbjct: 357  GQFIGKGYDCGGLFRFSLLDFNNKSVNHICANVDDLA--SIWHSRLCHINFGSMSRLATM 414

Query: 345  GLIPKISLNDFEKCQFCSQAKINKESHKSVT-RITEPFELIHSDLCELDGNLTRNGKRYF 403
             LIP I++    KC  C Q+K  ++ HK+   R   P ELIHSDLCE++G LT+ GKRYF
Sbjct: 415  SLIPNITIVKGSKCHSCVQSKQPRKPHKAAEERHLAPLELIHSDLCEMNGVLTKGGKRYF 474

Query: 404  ITFIDDCSDYTHVYLMRNKNEALDIFKQYVKEIENQFNIRIKRFRSDRGTEYGSHIFNEY 463
            +T IDD S + +VYL++ K+EALD FK Y  E+ENQ   +IKR RSDRG E+   +F+++
Sbjct: 475  MTLIDDASRFCYVYLLKTKDEALDYFKIYKAEVENQLERKIKRLRSDRGGEFFPKVFDDF 534

Query: 464  YKELGIIHETTAPYSPEMNGKAERKNRTFTELVVATMLNSGAAPHWWGEILLTVCYVLNR 523
              E GIIHE T PYSPE NG AERKNRT T+LV A +   G +  WWGE +LT C+VLNR
Sbjct: 535  CAEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTCGLSKAWWGEAVLTSCHVLNR 594

Query: 524  VPKTKNKISPYEILKKRQPNLSYFRTWGCLAYVRKPDPKRVKLASRAYECAFIGYALNSK 583
            +P  K + +PYE    R+P+LSY RTWGC+A V  P  K+ KL  R  +C F+GYA  S 
Sbjct: 595  IPMGKEEKTPYEKWVGRKPSLSYLRTWGCMAKVNVPINKKRKLGPRTVDCVFLGYASCSI 654

Query: 584  AYRFYDLKSK-------TIIESNDVDFYENKFPFKSGDSGGNSGG-------TDNSVLDQ 629
            AYRF  +KS+       TI+ES D  F+E+ FP K   S             T     +Q
Sbjct: 655  AYRFLVVKSEVPDVYVDTIMESRDATFFEHIFPMKDIHSNSRYSSEIIPEHNTPIESFEQ 714

Query: 630  PSEIITSNENIERDVIEPGRGKRARIAKEYGPEYVAYTIEEDPSSIKEALSSIDADLWQE 689
            P EI+      E D   P R KR R+ K +G +++ Y +++ P++I EA +S DAD W+E
Sbjct: 715  PHEIVLE----EDDNDAPKRSKRQRVEKSFGDDFIVYLVDDTPTTIAEAFASSDADDWKE 770

Query: 690  AINDEMDSLMSNETWHLTDLPPGCKTIGCKWILKKKLKPDGSIDKYKARLVAKGFRQREN 749
            A+++EMDS++SN TW +TD P GCK +GCKW+ KKKLKPDG+I+KYKARLVAKG+ Q+E 
Sbjct: 771  AVHNEMDSILSNGTWEITDRPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEG 830

Query: 750  VDFFDTYSPVTRITSIRVLISLAAIHNLIVHQMDVKTAFLNGELEEEIYMDQPEGFVIHG 809
             DFFDTYSPV R+T+IRVL+SLAA + L+VHQMDVKTAFLNGEL+EEIYM+QP+GFV+ G
Sbjct: 831  EDFFDTYSPVARMTTIRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKG 890

Query: 810  QENKVCKLDKSLYGLKQAPKQWHEKFDNLMIENEFKVNESDKCIYSKYENNTCTIICLYV 869
            QE+KVCKL KSLYGLKQAPKQWHEKFD  +    F +NE+D+C+Y +       I+CLYV
Sbjct: 891  QESKVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFAINEADRCVYYRCGGGEGVILCLYV 950

Query: 870  DDLLIFGSNLNAIKDVKSLLCHNFDMKDLGKADVILGIKITRTDNGISLNQSHYVEKILR 929
            DD+LIFG+N++ I +VKS L  +FDMKDLG+ADVIL IK+ + D GI+L+QSHYVEK+L+
Sbjct: 951  DDILIFGTNIDVINEVKSFLSKSFDMKDLGEADVILNIKLIKADGGITLSQSHYVEKVLK 1010

Query: 930  KYNYFYCKPASTPCDPSVKLFKNTGDSVRQTEYASIIGSLRYATDCTRPDISYAVGLLCK 989
            ++ +  CKP+ TP DPSV L KN    + Q  Y+ I+GSL Y    TRPDIS+AV  L +
Sbjct: 1011 RFGFSECKPSPTPYDPSVTLRKNKRIGLDQLRYSQIVGSLMYLAGATRPDISFAVSKLSR 1070

Query: 990  FTSRPSMEHWQAIERVMRYLKKTMTLGLHYQRYPAVLEGYSDADWNNLSDDSKATSGYIF 1049
            F S P  +HW A+ERVMRYL+ TM+ G+HY    AVLEGYSD++W + +D+  ATSGY+F
Sbjct: 1071 FMSNPGTDHWHALERVMRYLQGTMSYGIHYSGQHAVLEGYSDSNWISDADELYATSGYVF 1130

Query: 1050 SIAGGAVSWKSKKQTILAQSTMESEMIALAAASEEASWLRCLLSEIPLWERPLPAVLIHC 1109
            +I GGAVSW+S KQTIL +STME+E+ AL  A+ EA WLR LL ++P+ E+P+PA+L++C
Sbjct: 1131 TIGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWLRELLMDLPVVEKPIPAILMNC 1190

Query: 1110 DSTAAIAKIENRYYNGK-RRQIRRKHSTIREYLSNGTVRVDFVRTNENLADPLTKGLNRE 1168
            D+   IAK+ +   NGK  R ++R+  ++R+  ++G + V ++ T++NLADP TKGL R 
Sbjct: 1191 DNQTVIAKVTSSKDNGKSSRHVKRRLKSVRKLRNSGVISVTYISTDKNLADPFTKGLPRN 1250

Query: 1169 KVANTSSRMGLMP 1181
             +   S  MG+ P
Sbjct: 1251 VIEIASREMGMRP 1263


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,057,382,895
Number of Sequences: 2790947
Number of extensions: 92697818
Number of successful extensions: 325837
Number of sequences better than 10.0: 3238
Number of HSP's better than 10.0 without gapping: 2354
Number of HSP's successfully gapped in prelim test: 884
Number of HSP's that attempted gapping in prelim test: 316473
Number of HSP's gapped (non-prelim): 5507
length of query: 1185
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1046
effective length of database: 460,108,200
effective search space: 481273177200
effective search space used: 481273177200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)