BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146972.3 + phase: 0
(240 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidop... 150 4e-35
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop... 148 1e-34
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops... 144 1e-33
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana] 139 5e-32
UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabid... 139 5e-32
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo... 139 5e-32
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana] 138 1e-31
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense] 133 4e-30
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or... 132 6e-30
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop... 131 1e-29
UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa] 127 3e-28
UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidop... 120 2e-26
UniRef100_Q9LS18 Retroelement pol polyprotein-like [Arabidopsis ... 120 4e-26
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa] 117 2e-25
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana] 115 7e-25
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa] 115 1e-24
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa] 115 1e-24
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa] 114 2e-24
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa... 114 2e-24
UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa] 114 3e-24
>UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 150 bits (378), Expect = 4e-35
Identities = 86/190 (45%), Positives = 120/190 (62%), Gaps = 13/190 (6%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS ++L LG+ VLR+V KE TAA M L+ L+M KSL +R +LKQ+LY ++M +S
Sbjct: 70 KARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDSMT 129
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
I E + +F K++ DLEN++V + DED+AI+LL +LPK F+ K+T+ YGK T+ L+EI
Sbjct: 130 IEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALDEIT 188
Query: 132 AALRT---------KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFE--CFNC 180
A+R+ K L NS D D G S R R N+ +S +KSR + C+ C
Sbjct: 189 GAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKKVCWVC 247
Query: 181 HKMGHFKKDC 190
K GHFKK C
Sbjct: 248 GKEGHFKKQC 257
>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 148 bits (373), Expect = 1e-34
Identities = 84/197 (42%), Positives = 125/197 (62%), Gaps = 10/197 (5%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
E KARSAIVL + D+VLR++ KE+TAA+M L+ LYM+K+L +R + KQ+LYSF+M
Sbjct: 69 EKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFKMS 128
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGK-EGTVT 126
E+ ++ + EF +I+ DLEN+ V + DED+AILLL ALPK+F+ K+T+ Y + +T
Sbjct: 129 ENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILT 188
Query: 127 LEEIQAALRTKELT--NSKDLTHEHDEGLSV-------SRGNGGGRGNRRKSGNKSRFEC 177
L+E+ AA+ +KEL + K EGL V +G G+G +K +K + C
Sbjct: 189 LDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKKKPGC 248
Query: 178 FNCHKMGHFKKDCPEIN 194
+ C + GHF+ CP N
Sbjct: 249 WTCGEEGHFRSSCPNQN 265
>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 144 bits (364), Expect = 1e-33
Identities = 80/188 (42%), Positives = 115/188 (60%), Gaps = 10/188 (5%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS I+L LG+ VLR+V K+ TAA M L+ L+M KSL +R +LKQ+LY ++M E+
Sbjct: 78 KARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQRLYGYKMSENMT 137
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+ E + +F K++ DLEN++V + DED+AI+LL +LP+ F+ K T+ Y K T+ LEEI
Sbjct: 138 MEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT-TLHLEEIT 196
Query: 132 AALRT---------KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHK 182
+A+R+ K L N+ D D G S +RG G + R + C+ C K
Sbjct: 197 SAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSKGAGKTCWICGK 256
Query: 183 MGHFKKDC 190
GHFKK C
Sbjct: 257 EGHFKKQC 264
>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 139 bits (351), Expect = 5e-32
Identities = 85/203 (41%), Positives = 124/203 (60%), Gaps = 12/203 (5%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS IVL + D+VLR++ KE +AA+M L+ LYM+K+L +R +LKQ+LYSF+M E+ +
Sbjct: 73 KARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKMSENLS 132
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV-TLEEI 130
I + EF I+ DLEN+ V + DED+AILLL +LPK F+ K+T+ Y TV +L+E+
Sbjct: 133 IEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEV 192
Query: 131 QAALRTKELT--NSKDLTHEHDEGLSV-------SRGNGGGRGNRRKSGNKSRFECFNCH 181
AA+ ++EL + K EGL V R +G ++S +KS+ C+ C
Sbjct: 193 AAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRGCWICG 252
Query: 182 KMGHFKKDCPEINGNSAQIVYEG 204
+ GH K CP N N Q +G
Sbjct: 253 EDGHLKSTCP--NKNKPQFKNQG 273
>UniRef100_O82196 Copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 139 bits (351), Expect = 5e-32
Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 11 DKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESK 70
+KA I + +GDKVLR + TAA WA L+ LY+ KSL +R +L+ ++Y++RM +SK
Sbjct: 42 EKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQDSK 101
Query: 71 AIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEI 130
+ E + EF K++ DL N+++Q+ DE +AIL+L ALP S++ K T+ YG+EG + L+++
Sbjct: 102 TLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-IKLDDV 160
Query: 131 QAALRTK--ELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKK 188
+A ++K EL +S + EGL V RG RG+ + + C+ C K GHFK+
Sbjct: 161 ISAAKSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKSTEGKKVCWICGKEGHFKR 219
Query: 189 DC 190
C
Sbjct: 220 QC 221
>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Contains: Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
Length = 1328
Score = 139 bits (351), Expect = 5e-32
Identities = 80/223 (35%), Positives = 124/223 (54%), Gaps = 11/223 (4%)
Query: 1 MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQ 60
M + ++ ++A SAI L L D V+ + E TA +W +LESLYM+K+L ++ +LK+Q
Sbjct: 47 MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106
Query: 61 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG 120
LY+ M E + L FN ++ L N+ V++E+EDKAILLL +LP S+++ T+L+G
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHG 166
Query: 121 KEGTVTLEEIQAALRTKELTNSKD-------LTHEHDEGLSVSRGNGGGRGNRRKSGNKS 173
K T+ L+++ +AL E K +T S N G G R KS N+S
Sbjct: 167 KT-TIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRS 225
Query: 174 RF---ECFNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGALMV 213
+ C+NC++ GHFK+DCP + + +D A MV
Sbjct: 226 KSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMV 268
>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
Length = 1230
Score = 138 bits (348), Expect = 1e-31
Identities = 82/201 (40%), Positives = 122/201 (59%), Gaps = 12/201 (5%)
Query: 3 QAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
+A E KARS IVL + D+VLR+ KE TA SM L+ LYM+K+L +R +LKQ+LY
Sbjct: 62 EALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLY 121
Query: 63 SFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGK- 121
S++M E+ ++ + EF +++ DLEN V + DED+AILLL +LPK F+ K+T+ YG
Sbjct: 122 SYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSG 181
Query: 122 EGTVTLEEIQAALRTKELT--NSKDLTHEHDEGLSV-SRGNGGGRGNRRKSGNKSRFE-- 176
T++++E+ AA+ +KEL ++K EGL V + G +++ GNK R
Sbjct: 182 RTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSR 241
Query: 177 ------CFNCHKMGHFKKDCP 191
C+ C + GHFK CP
Sbjct: 242 SKGWKGCWICGEEGHFKTSCP 262
>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 133 bits (334), Expect = 4e-30
Identities = 79/235 (33%), Positives = 123/235 (51%), Gaps = 16/235 (6%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
E+ +KA SAI L L D V+ + E +A +W KLE+LYM+K+L ++ +LK+QLY+ M
Sbjct: 55 ELDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMD 114
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTL 127
E + L N ++ L N+ V++E+EDK I+LL +LP S+++ T+L+GK+ ++ L
Sbjct: 115 EGTNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQL 173
Query: 128 EEIQAALRTKELTNSKDLTH-----EHDEGLSVSR-----GNGGGRGNRRKSGNKSRFEC 177
+++ +AL E K H G S R G G RG + C
Sbjct: 174 KDVTSALLLNEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNC 233
Query: 178 FNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGALMVW-----CCLEDEEGDVSHL 227
+NC + GHFK+DCP + + +D A MV L +EE + HL
Sbjct: 234 YNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHL 288
>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
Length = 556
Score = 132 bits (333), Expect = 6e-30
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 30/206 (14%)
Query: 1 MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQ 60
M + EM +A + I L L D V+ +V E T +W KL SLYM+KSL + +LKQQ
Sbjct: 179 MDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQ 238
Query: 61 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG 120
LY +M E + + + FN+++ DL ++V+L+DEDKAI+LLC+LP SFE T+ +G
Sbjct: 239 LYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHG 298
Query: 121 KEGTVTLEEIQAALRTKELTNSK---------------DLTHEHDEGLSVSRGNGGGRGN 165
K+ TV EEI ++L ++L SK H+H+ G+S S+ G
Sbjct: 299 KD-TVKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGA---- 353
Query: 166 RRKSGNKSRFECFNCHKMGHFKKDCP 191
C+ CH+ GH +++CP
Sbjct: 354 ----------RCYKCHEFGHIRRNCP 369
>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 131 bits (330), Expect = 1e-29
Identities = 85/198 (42%), Positives = 127/198 (63%), Gaps = 15/198 (7%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARSAIVL + D+VLR++ KE +AA+M L+ LYM+K+L +R + KQ+LYSF+M E+ +
Sbjct: 73 KARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLS 132
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG-KEGTVTLEEI 130
I + EF +I+ DLEN V + DED+AILLL +LPK F+ ++T+ YG T++L+E+
Sbjct: 133 IEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEV 192
Query: 131 QAALRTKEL---TNSKDLTHEHDEGLSV-----SRGNGGGRG---NRRKSGNKSRFE--C 177
AA+ +KEL +N K + + EGL V +RG RG N +KS +KSR + C
Sbjct: 193 VAAIYSKELELGSNKKSIKGQ-AEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGC 251
Query: 178 FNCHKMGHFKKDCPEING 195
+ C + + + E NG
Sbjct: 252 WICGESSNGSSNYSEANG 269
>UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]
Length = 382
Score = 127 bits (318), Expect = 3e-28
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 34/241 (14%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
EM +A + I L L D V+ +V E + +W KL SL+M+KSL + +LKQQLY ++
Sbjct: 55 EMKAQAAATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQ 114
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTL 127
E + + + FN+++ DL ++V+L+DEDKAI+LLC+LP S+E T+ +GK+ TV
Sbjct: 115 EESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKD-TVKT 173
Query: 128 EEIQAALRTKELTNSKDL---------------THEHDEGLSVSRGNGGGRGNRRKSGNK 172
EEI ++L ++L SK H+H+ G+S S+ G
Sbjct: 174 EEIISSLLARDLRRSKKNEATKASQGKSLLVKDKHDHEAGVSKSKEKGA----------- 222
Query: 173 SRFECFNCHKMGHFKKDCPEI---NGNSAQIVYEGYE-DVGALMVWCCLEDEEGDVSHLG 228
C+ CH+ GH +++CP + G A + G + D G+ + ++ G+ L
Sbjct: 223 ---RCYKCHEFGHIRRNCPLLKKRKGGIASLAARGDDSDSGSHEILTVSDEMSGEAWMLD 279
Query: 229 S 229
S
Sbjct: 280 S 280
>UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 120 bits (302), Expect = 2e-26
Identities = 70/197 (35%), Positives = 111/197 (55%), Gaps = 10/197 (5%)
Query: 3 QAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
+ + E DKA++ I L + DKVLR++ TAA W L+ L+M +SL HR + + Y
Sbjct: 39 EVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFY 98
Query: 63 SFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLY-GK 121
+F+M E+K I E + +F KI+ DL ++++ + DE +AILLL +LP ++ TM Y
Sbjct: 99 TFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNS 158
Query: 122 EGTVTLEEIQAALRTKE---LTNSKDLTHEH-----DEGLSVSRGNGGGRGNRRKSGNKS 173
+ L+++ A R KE N++ + H +G + ++GN G +R KS +
Sbjct: 159 REKLRLDDVMVAARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRSKSADGK 218
Query: 174 RFECFNCHKMGHFKKDC 190
R C+ C K GHFKK C
Sbjct: 219 RV-CWICGKEGHFKKQC 234
>UniRef100_Q9LS18 Retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1338
Score = 120 bits (300), Expect = 4e-26
Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 11/215 (5%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
+ E +KARS I+L + D +LR + E TAA M + L+ LY++ L+ R LK++L+ F+
Sbjct: 81 REEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLFEFK 140
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
M E+KA+ E + +F +I++DLE ++V + DEDKA +LL +LP+ E K ++ Y +E +
Sbjct: 141 MSENKAVEENIEDFFRIVEDLEKLDVYVSDEDKAFMLLLSLPRKLEQLKYSLDYCEE-PL 199
Query: 126 TLEEIQAALRTKEL--TNSKDLTHEHDEGLSV-SRGNGGGRGNRRKSGNKSRFE------ 176
TL + A+ KEL + T E ++ LS+ R R + K K R E
Sbjct: 200 TLGRVMTAIYKKELEVAQIERQTEEEEKRLSLRERERSDYREEQAKGKEKVRSEAREKKG 259
Query: 177 -CFNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGA 210
C+ C + GH K +C + N ++ YE+ A
Sbjct: 260 PCWRCGQKGHVKTECFQEKKNKSRKKSVRYEESSA 294
>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
Length = 1181
Score = 117 bits (294), Expect = 2e-25
Identities = 71/195 (36%), Positives = 116/195 (59%), Gaps = 18/195 (9%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KA S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + +
Sbjct: 57 KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 116
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F +I+ DLE++EV+ +++D A++LLC+LP S+ +F++T+LY ++ T+TL+E+
Sbjct: 117 VMDHLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVY 175
Query: 132 AALRTKELTNS---KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS------------RFE 176
AL KE + ++ EGL V RG+ + KS +KS R++
Sbjct: 176 DALHAKEKMKKMVPSEGSNSQAEGL-VVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK 234
Query: 177 -CFNCHKMGHFKKDC 190
C C + GH C
Sbjct: 235 SCKYCKRDGHDISKC 249
>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
Length = 1356
Score = 115 bits (289), Expect = 7e-25
Identities = 67/196 (34%), Positives = 115/196 (58%), Gaps = 12/196 (6%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E ++A++ I+ + D VL +V AT A +WA L YM SL +R + + +LYSF+
Sbjct: 75 KIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSFK 134
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
MV + I + + EF +I+ +L ++E+Q+++E +AIL+L +LP S K+T+ YG + T+
Sbjct: 135 MVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNK-TL 193
Query: 126 TLEEIQAALRT--KELTNSKDL---------THEHDEGLSVSRGNGGGRGNRRKSGNKSR 174
T++++ ++ ++ +EL + DL T E L + GG R +S +K++
Sbjct: 194 TVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTK 253
Query: 175 FECFNCHKMGHFKKDC 190
C+ C K GH KKDC
Sbjct: 254 VPCWYCKKEGHVKKDC 269
>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
Length = 1280
Score = 115 bits (288), Expect = 1e-24
Identities = 70/195 (35%), Positives = 114/195 (57%), Gaps = 18/195 (9%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KA S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + +
Sbjct: 92 KAMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 151
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F +I+ DLE+IEV+ ++ED ++LLC+LP S+ +F++T+LY + T+ L+E+
Sbjct: 152 VMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVY 210
Query: 132 AALRTKELTNS---KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS------------RFE 176
AL KE + ++ EGL V RG + + +S +KS R++
Sbjct: 211 DALHAKEKMKKMVPSEGSNSQAEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK 269
Query: 177 -CFNCHKMGHFKKDC 190
C C + GH +C
Sbjct: 270 SCKYCKRDGHDISEC 284
>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
Length = 1243
Score = 115 bits (288), Expect = 1e-24
Identities = 68/195 (34%), Positives = 116/195 (58%), Gaps = 18/195 (9%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KA S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + ++
Sbjct: 57 KAISYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDES 116
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F +I+ DLE++EV+ +++D ++LLC+LP S+ +F+ T+LY ++ T+TL+E+
Sbjct: 117 VMDHLSAFKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRD-TLTLKEVY 175
Query: 132 AALRTKELTN---SKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS------------RFE 176
A KE + + ++ EGL V RG + + +S +KS R++
Sbjct: 176 DAFHAKEKMKKMVTSEGSNSQAEGL-VVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYK 234
Query: 177 -CFNCHKMGHFKKDC 190
C C + GH +C
Sbjct: 235 SCKYCKRDGHDISEC 249
>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
Length = 1211
Score = 114 bits (286), Expect = 2e-24
Identities = 65/165 (39%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
K S I L L + +L+EV KE TAA +W KLE + MTK L + LKQ+L+ ++ + +
Sbjct: 57 KTMSYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGS 116
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+M+ L+ F KI+ DLE++EV+ ++ED ++LLC+LP S+ +F++T+LY + T+TL+E+
Sbjct: 117 VMDHLSAFKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVY 175
Query: 132 AALRTKELTNS---KDLTHEHDEGLSVSRGNGGGRGNRRKSGNKS 173
AL KE + ++ EGL V RG + KS +KS
Sbjct: 176 DALHAKEKIKKMVPSEGSNSQAEGL-VVRGRQQEKNTNSKSRDKS 219
>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
Length = 1326
Score = 114 bits (285), Expect = 2e-24
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 16/201 (7%)
Query: 4 AEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYS 63
AE+ KA I L L + +L+EV +E TAA +W KLES+ M+K L + +K +L+S
Sbjct: 51 AEEKRKDRKALLLIQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFS 110
Query: 64 FRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEG 123
++ ES +++ ++ F +I+ DL +IEVQ +DED +LLLC+LP S+ +F++T+L ++
Sbjct: 111 HKLQESGSVLNHISVFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRD- 169
Query: 124 TVTLEEIQAALRTKELTN---SKDLTHEHDEGLSVSRGNGGGR-----GNRRKSGNKSRF 175
+TL E+ AL+ +E D + E L V RG R +R KS ++ R
Sbjct: 170 ELTLAEVYEALQNREKMKGMVQSDASSSKGEALQV-RGRSEQRTYNDSSDRDKSQSRGRS 228
Query: 176 E------CFNCHKMGHFKKDC 190
+ C C K HF ++C
Sbjct: 229 KSRGKKFCKYCKKKNHFIEEC 249
>UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]
Length = 432
Score = 114 bits (284), Expect = 3e-24
Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 27/197 (13%)
Query: 1 MSQAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQ 60
M + EM +A + I CL D+++ V +E + +W KLE+ +M+K+L ++++LKQ+
Sbjct: 83 MEDDDCEEMQLQAAATIRRCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQK 142
Query: 61 LYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG 120
LY +M E + + FN+++ DL ++V+++DEDKAI+LLC+LP ES+++ M
Sbjct: 143 LYGLKMQEGADLTAHVNVFNQLVTDLVKMDVEVDDEDKAIVLLCSLP---ESYEHVMRKN 199
Query: 121 KEGTVTLEEIQAALRTKELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNC 180
KEG E QA EGL V + G + + K K +CF C
Sbjct: 200 KEG----ETSQA------------------EGLLVKEDHAGHKVKKNK--KKKMVKCFRC 235
Query: 181 HKMGHFKKDCPEINGNS 197
+ GH +++CP + G +
Sbjct: 236 DEWGHIRRECPTLKGKA 252
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,177,648
Number of Sequences: 2790947
Number of extensions: 15563699
Number of successful extensions: 66078
Number of sequences better than 10.0: 861
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 64791
Number of HSP's gapped (non-prelim): 1400
length of query: 240
length of database: 848,049,833
effective HSP length: 124
effective length of query: 116
effective length of database: 501,972,405
effective search space: 58228798980
effective search space used: 58228798980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)
Medicago: description of AC146972.3