BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146940.4 + phase: 1 /pseudo
         (674 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_O81190 Putative transposase [Arabidopsis thaliana]           67  1e-09
UniRef100_Q94LV8 Hypothetical protein OSJNBa0082M15.8 [Oryza sat...    44  0.016
UniRef100_Q75G98 Hypothetical protein OSJNBa0042F15.17 [Oryza sa...    44  0.016
UniRef100_Q8S2E8 P0022F10.3 protein [Oryza sativa]                     44  0.020
UniRef100_Q852A8 Hypothetical protein OSJNBb0081B07.17 [Oryza sa...    40  0.23
UniRef100_Q9LIE1 Transposase-like protein [Arabidopsis thaliana]       37  1.5
UniRef100_Q60D97 Putative polyprotein [Oryza sativa]                   37  2.5
UniRef100_Q948G9 Putative transposable element [Oryza sativa]          36  3.3
UniRef100_Q9YW03 ORF MSV089 Putative NTPase, Rabbit fibroma viru...    36  4.3
UniRef100_Q55246 M protein [Streptococcus sp]                          36  4.3
UniRef100_Q55279 MLG72 precursor [Streptococcus sp.]                   36  4.3

>UniRef100_O81190 Putative transposase [Arabidopsis thaliana]
          Length = 729

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 557 EKLECV*AYSLKKKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPINDELLDDHHDNW 616
           E+  CV      KKRNRLEHQRLNDLVFV YNL L++R+ + R+YDP++ E + D  + W
Sbjct: 612 ERNWCVFERIHTKKRNRLEHQRLNDLVFVHYNLRLQHRSKRKRSYDPVDYESI-DKTEFW 670

Query: 617 VLEDSPP-FLTVEELES 632
           V+E+     L  +ELE+
Sbjct: 671 VVEEEEAGELEYDELEN 687


>UniRef100_Q94LV8 Hypothetical protein OSJNBa0082M15.8 [Oryza sativa]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.016
 Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 569 KKRNRLEHQRLNDLVFVRYNLMLEN-RNNKIRNYDPINDELLD 610
           KKRNRL H+R+ DLVFV++N  L N R NK R  DPI  E+ D
Sbjct: 511 KKRNRLLHERMRDLVFVKFNSKLRNKRENKGR--DPIEKEVDD 551


>UniRef100_Q75G98 Hypothetical protein OSJNBa0042F15.17 [Oryza sativa]
          Length = 1005

 Score = 43.9 bits (102), Expect = 0.016
 Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 3/43 (6%)

Query: 569 KKRNRLEHQRLNDLVFVRYNLMLEN-RNNKIRNYDPINDELLD 610
           KKRNRL H+R+ DLVFV++N  L N R NK R  DPI  E+ D
Sbjct: 866 KKRNRLLHERMRDLVFVKFNSKLRNKRENKGR--DPIEKEVDD 906


>UniRef100_Q8S2E8 P0022F10.3 protein [Oryza sativa]
          Length = 965

 Score = 43.5 bits (101), Expect = 0.020
 Identities = 24/43 (55%), Positives = 30/43 (68%), Gaps = 3/43 (6%)

Query: 569 KKRNRLEHQRLNDLVFVRYNLMLEN-RNNKIRNYDPINDELLD 610
           KKRNRL H+R+ DLVF+++N  L N R NK R  DPI  E+ D
Sbjct: 822 KKRNRLLHERMRDLVFIKFNSKLRNKRENKGR--DPIEKEVDD 862


>UniRef100_Q852A8 Hypothetical protein OSJNBb0081B07.17 [Oryza sativa]
          Length = 779

 Score = 40.0 bits (92), Expect = 0.23
 Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 569 KKRNRLEHQRLNDLVFVRYNLMLENR-NNKIRNYDPINDELLDDHHDNWVLEDS 621
           ++ N  E QR++ L FV+YNL L++R  +K + +DP++ + + D  D+WV++ S
Sbjct: 670 QRMNLFERQRMHHLTFVQYNLRLQHRQQHKTKAFDPVSVDNI-DIVDDWVVDRS 722


>UniRef100_Q9LIE1 Transposase-like protein [Arabidopsis thaliana]
          Length = 761

 Score = 37.4 bits (85), Expect = 1.5
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 569 KKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPINDELLDDHHDNWVLED 620
           + +N +E QRLNDLVFV+YN+ L    ++    D + D L   H +  VLED
Sbjct: 646 ESKNSIERQRLNDLVFVQYNMRLRRIGSESSGDDTV-DPL--SHSNMEVLED 694


>UniRef100_Q60D97 Putative polyprotein [Oryza sativa]
          Length = 1086

 Score = 36.6 bits (83), Expect = 2.5
 Identities = 19/45 (42%), Positives = 27/45 (59%), Gaps = 4/45 (8%)

Query: 564 AYSLKKKRNRLEHQRLNDLVFVRYNLMLE----NRNNKIRNYDPI 604
           A+   K RNRL H++LN LV+V YNL L     N   ++ + DP+
Sbjct: 772 AFVHTKVRNRLTHKKLNKLVYVNYNLRLRIQQANAQIRVEDDDPL 816


>UniRef100_Q948G9 Putative transposable element [Oryza sativa]
          Length = 891

 Score = 36.2 bits (82), Expect = 3.3
 Identities = 20/41 (48%), Positives = 26/41 (62%), Gaps = 2/41 (4%)

Query: 564 AYSLKKKRNRLEHQRLNDLVFVRYNLML--ENRNNKIRNYD 602
           A+   K RNRL H++LN LV+V YNL L  +  N +IR  D
Sbjct: 660 AFVHTKVRNRLTHKKLNKLVYVNYNLRLRIQQANAQIRCLD 700


>UniRef100_Q9YW03 ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (Vaccinia D5R)
           homolog, similar to PIR:G41700 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 834

 Score = 35.8 bits (81), Expect = 4.3
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 567 LKKKRNRLEHQRLNDLVFVRYNLMLENRNNKIRNYDPI---NDELLDDHHDNWVLEDSPP 623
           L KK+  LE + +N +  +  + +LE  NN I N D I   ++ +L+++HD + L     
Sbjct: 16  LDKKKCILEEEYVNQIDKLTLDELLEKINNAIENNDSIEEYHEIILNEYHDRFKL----- 70

Query: 624 FLTVEELESLRNDLANMTIQPISNDIGMYVFS 655
           F  +E  +   +D  + T +   ++I  ++ S
Sbjct: 71  FFDIELKKKYNSDYFDSTFENFKDEISSFLAS 102


>UniRef100_Q55246 M protein [Streptococcus sp]
          Length = 441

 Score = 35.8 bits (81), Expect = 4.3
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 567 LKKKRNRLEHQRLNDLV---FVRYNLMLENRNNKIRNYDPINDELLDDHHDNWVLEDSPP 623
           ++K+R R E+++L++LV      YN +L+  N+ ++  + +ND L      N +LE+   
Sbjct: 67  IEKERLRKENEQLDELVRKEVAEYNSLLDKHNSLVKKMEVVNDSLQATERANELLENK-- 124

Query: 624 FLTVEELESLRNDL 637
              ++E + L  DL
Sbjct: 125 ---LKENQDLNQDL 135


>UniRef100_Q55279 MLG72 precursor [Streptococcus sp.]
          Length = 472

 Score = 35.8 bits (81), Expect = 4.3
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 567 LKKKRNRLEHQRLNDLV---FVRYNLMLENRNNKIRNYDPINDELLDDHHDNWVLEDSPP 623
           ++K+R R E+++L++LV      YN +L+  N+ ++  + +ND L      N +LE+   
Sbjct: 55  IEKERLRKENEQLDELVRKEVAEYNSLLDKHNSLVKKMEVVNDSLQATERANELLENK-- 112

Query: 624 FLTVEELESLRNDL 637
              ++E + L  DL
Sbjct: 113 ---LKENQDLNQDL 123


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.366    0.162    0.645 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 905,977,530
Number of Sequences: 2790947
Number of extensions: 32440194
Number of successful extensions: 182817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 182809
Number of HSP's gapped (non-prelim): 12
length of query: 674
length of database: 848,049,833
effective HSP length: 134
effective length of query: 540
effective length of database: 474,062,935
effective search space: 255993984900
effective search space used: 255993984900
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 78 (34.7 bits)