BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146862.9 + phase: 0
(100 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9SDH9 Hypothetical protein [Oryza sativa] 96 3e-19
UniRef100_Q5ZDI4 Hypothetical protein P0686E09.33 [Oryza sativa] 60 1e-08
UniRef100_Q9Y6V3 Hypothetical protein 44M2.4 [Homo sapiens] 39 0.030
UniRef100_Q9P224 KIAA1504 protein [Homo sapiens] 39 0.030
UniRef100_Q8K203 Endonuclease VIII-like 3 [Mus musculus] 39 0.030
UniRef100_UPI000043032D UPI000043032D UniRef100 entry 39 0.039
UniRef100_Q6GPC0 MGC80537 protein [Xenopus laevis] 39 0.039
UniRef100_Q9NG98 DNA topoisomerase III alpha [Drosophila melanog... 39 0.039
UniRef100_UPI00002BAB24 UPI00002BAB24 UniRef100 entry 38 0.051
UniRef100_UPI000036AB42 UPI000036AB42 UniRef100 entry 38 0.067
UniRef100_UPI00003AF359 UPI00003AF359 UniRef100 entry 37 0.087
UniRef100_UPI0000337779 UPI0000337779 UniRef100 entry 37 0.11
UniRef100_UPI000027CB44 UPI000027CB44 UniRef100 entry 37 0.11
UniRef100_UPI0000365CD0 UPI0000365CD0 UniRef100 entry 37 0.15
UniRef100_UPI0000365CCF UPI0000365CCF UniRef100 entry 37 0.15
UniRef100_UPI0000365CCE UPI0000365CCE UniRef100 entry 37 0.15
UniRef100_UPI0000456A3B UPI0000456A3B UniRef100 entry 36 0.19
UniRef100_Q5U3G8 Zgc:103553 [Brachydanio rerio] 36 0.19
UniRef100_Q8C133 Mus musculus 10 days neonate skin cDNA, RIKEN f... 36 0.19
UniRef100_Q6ZPP5 MKIAA1504 protein [Mus musculus] 36 0.19
>UniRef100_Q9SDH9 Hypothetical protein [Oryza sativa]
Length = 161
Score = 95.5 bits (236), Expect = 3e-19
Identities = 51/111 (45%), Positives = 66/111 (58%), Gaps = 15/111 (13%)
Query: 1 MHRGFKFSITNSIMWQTADRSLIWKQSPEQPSAYP----HFPFKARDMNTPI-------I 49
MHRGFKFSITNS++WQ+A +S+ + SP S YP H P + M +P+ I
Sbjct: 54 MHRGFKFSITNSLVWQSAPQSITCQSSPAH-SPYPNQSHHKPMEV--MGSPVQVNPYAGI 110
Query: 50 QYHHPC-CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWAS 99
P C+CGV S + +PGP G F+GCGNWT+TRGA C Y+ W S
Sbjct: 111 TVKKPMYCHCGVLSQIKVTYRPGPMHGRYFYGCGNWTSTRGANCDYWVWLS 161
>UniRef100_Q5ZDI4 Hypothetical protein P0686E09.33 [Oryza sativa]
Length = 304
Score = 60.1 bits (144), Expect = 1e-08
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 55 CCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYF 95
CCYCGV S+ G++ PG Q F+GCGNWTA GA C +F
Sbjct: 253 CCYCGVASTGGVMAMPGSTQRRCFYGCGNWTAVSGATCPFF 293
>UniRef100_Q9Y6V3 Hypothetical protein 44M2.4 [Homo sapiens]
Length = 426
Score = 38.9 bits (89), Expect = 0.030
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 20 RSLIWKQSPEQPSAYPHF--PFKARDMNTPIIQYHHPCCYCGVKSSRGMVRKPGPKQGSL 77
RS W++ P ++ + P+K+ M P+ C CG +S R +V GP G +
Sbjct: 301 RSSSWRRLPSILTSTVNLQEPWKSGKMTPPL-------CKCGRRSKRLVVSNNGPNHGKV 353
Query: 78 FFGC--GNWTATRGARCHYFEW 97
F+ C G + R C YF+W
Sbjct: 354 FYCCPIGKYQENRKC-CGYFKW 374
>UniRef100_Q9P224 KIAA1504 protein [Homo sapiens]
Length = 447
Score = 38.9 bits (89), Expect = 0.030
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 20 RSLIWKQSPEQPSAYPHF--PFKARDMNTPIIQYHHPCCYCGVKSSRGMVRKPGPKQGSL 77
RS W++ P ++ + P+K+ M P+ C CG +S R +V GP G +
Sbjct: 322 RSSSWRRLPSILTSTVNLQEPWKSGKMTPPL-------CKCGRRSKRLVVSNNGPNHGKV 374
Query: 78 FFGC--GNWTATRGARCHYFEW 97
F+ C G + R C YF+W
Sbjct: 375 FYCCPIGKYQENRKC-CGYFKW 395
>UniRef100_Q8K203 Endonuclease VIII-like 3 [Mus musculus]
Length = 606
Score = 38.9 bits (89), Expect = 0.030
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 46 TPIIQYHHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
+P+ + HH C V VRK G +G F+ C + RGA+C +FEWA
Sbjct: 505 SPLCKMHHRRCVLRV------VRKDGENKGRQFYAC---SLPRGAQCGFFEWA 548
Score = 31.6 bits (70), Expect = 4.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
P C G +S V K GP G FF C + +C++F+WA
Sbjct: 553 PFCRHGKRSIMKTVLKIGPNNGKNFFVC---PLEKKKQCNFFQWA 594
>UniRef100_UPI000043032D UPI000043032D UniRef100 entry
Length = 1059
Score = 38.5 bits (88), Expect = 0.039
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 3/44 (6%)
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEW 97
P C CG+ ++ V K GP +G F+ C N ARC +F+W
Sbjct: 824 PSCKCGLDAAFATVIKEGPNKGRQFWACPN---NPKARCGFFQW 864
>UniRef100_Q6GPC0 MGC80537 protein [Xenopus laevis]
Length = 1022
Score = 38.5 bits (88), Expect = 0.039
Identities = 18/43 (41%), Positives = 23/43 (52%), Gaps = 6/43 (13%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C CGV + + VRK GP QG F+ C G C++F WA
Sbjct: 827 CNCGVAAVQLTVRKEGPNQGRPFYKC------NGGACNFFLWA 863
>UniRef100_Q9NG98 DNA topoisomerase III alpha [Drosophila melanogaster]
Length = 1250
Score = 38.5 bits (88), Expect = 0.039
Identities = 18/42 (42%), Positives = 23/42 (53%), Gaps = 4/42 (9%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEW 97
C CG +S+ VRK GP QG F+ C TR C +F+W
Sbjct: 1152 CNCGQLASQLTVRKDGPNQGRPFYAC----PTREKSCGFFKW 1189
Score = 35.4 bits (80), Expect = 0.33
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 13 IMWQTADRSLIWKQSPEQP----SAYPHFPFKARDMNTPIIQYHHP---CCYCGVKSSRG 65
++W T +R+ + +P P + P + RD P C C + +
Sbjct: 986 MLWGTRERASLGTAAPTPPPKPAAKRPRWDSVERDSTPPSSVPESETVLCTGCQQPARQN 1045
Query: 66 MVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
VRK GP G L++ C + C++F+WA
Sbjct: 1046 TVRKNGPNLGRLYYKC-----PKPDECNFFQWA 1073
>UniRef100_UPI00002BAB24 UPI00002BAB24 UniRef100 entry
Length = 984
Score = 38.1 bits (87), Expect = 0.051
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 25 KQSPEQPSAYPHFPFKARDMNTPIIQYHHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNW 84
+ P QP P +R+ ++ I C CG ++ VRK GP QG F+ C
Sbjct: 787 RPGPPQPGPPPQALSASRNSDSDAIM-----CNCGQQAVLLTVRKDGPNQGRQFYKC--- 838
Query: 85 TATRGARCHYFEWA 98
G C +F WA
Sbjct: 839 ---NGGTCAFFLWA 849
Score = 35.8 bits (81), Expect = 0.25
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C C + V+K GP +G +F CG TR +C +F+WA
Sbjct: 886 CNCQETAVTRTVQKDGPNKGRMFHTCGK---TREQQCGFFQWA 925
>UniRef100_UPI000036AB42 UPI000036AB42 UniRef100 entry
Length = 1001
Score = 37.7 bits (86), Expect = 0.067
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWASA 100
C CG ++ VRK GP QG FF C G C++F WA +
Sbjct: 813 CNCGQEAVLLTVRKEGPNQGRQFFKC------NGGSCNFFLWADS 851
>UniRef100_UPI00003AF359 UPI00003AF359 UniRef100 entry
Length = 594
Score = 37.4 bits (85), Expect = 0.087
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGC--GNWTATRGARCHYFEWASA 100
P C CG ++ R V GP G FF C G ++ + C YF+W +A
Sbjct: 541 PLCNCGQRAKRRYVSNAGPNHGKAFFCCPVGRHEGSKRS-CGYFKWENA 588
>UniRef100_UPI0000337779 UPI0000337779 UniRef100 entry
Length = 533
Score = 37.0 bits (84), Expect = 0.11
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Query: 52 HHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
H P C+ G + V K GP G FF C + +G +C +F+WA
Sbjct: 478 HFPTCHHGKRCLMRTVLKLGPNNGRNFFTC---SFQKGKQCDFFQWA 521
>UniRef100_UPI000027CB44 UPI000027CB44 UniRef100 entry
Length = 58
Score = 37.0 bits (84), Expect = 0.11
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 8/53 (15%)
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGC------GNWTATRGARCHYFEWASA 100
P C CG ++ R +V GP G F+ C G T +G C +F+W SA
Sbjct: 5 PLCSCGRRAKRQVVSNGGPNHGRGFYCCAVRRSGGAGTVQKG--CQFFQWESA 55
>UniRef100_UPI0000365CD0 UPI0000365CD0 UniRef100 entry
Length = 730
Score = 36.6 bits (83), Expect = 0.15
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 3/43 (6%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C+C + V+K GP +G +F CG +R +C +F+WA
Sbjct: 630 CHCNETAVTRTVQKDGPNKGRMFHTCGK---SREQQCGFFQWA 669
Score = 35.0 bits (79), Expect = 0.43
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C CG ++ VRK GP QG F+ C G C +F WA
Sbjct: 558 CNCGQQALLLTVRKDGPNQGRQFYKC------NGGTCGFFLWA 594
>UniRef100_UPI0000365CCF UPI0000365CCF UniRef100 entry
Length = 741
Score = 36.6 bits (83), Expect = 0.15
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 3/43 (6%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C+C + V+K GP +G +F CG +R +C +F+WA
Sbjct: 702 CHCNETAVTRTVQKDGPNKGRMFHTCGK---SREQQCGFFQWA 741
>UniRef100_UPI0000365CCE UPI0000365CCE UniRef100 entry
Length = 959
Score = 36.6 bits (83), Expect = 0.15
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 3/43 (6%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C+C + V+K GP +G +F CG +R +C +F+WA
Sbjct: 860 CHCNETAVTRTVQKDGPNKGRMFHTCGK---SREQQCGFFQWA 899
Score = 35.0 bits (79), Expect = 0.43
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
C CG ++ VRK GP QG F+ C G C +F WA
Sbjct: 788 CNCGQQALLLTVRKDGPNQGRQFYKC------NGGTCGFFLWA 824
>UniRef100_UPI0000456A3B UPI0000456A3B UniRef100 entry
Length = 1001
Score = 36.2 bits (82), Expect = 0.19
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 6/45 (13%)
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWASA 100
C CG ++ VRK GP +G FF C G C++F WA +
Sbjct: 813 CNCGQEAVLLTVRKEGPNRGRQFFKC------NGGSCNFFLWADS 851
>UniRef100_Q5U3G8 Zgc:103553 [Brachydanio rerio]
Length = 550
Score = 36.2 bits (82), Expect = 0.19
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 52 HHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
H P C+ G ++ V K GP G F+ C G +C++F+WA
Sbjct: 495 HFPMCHHGKRTVMKTVLKLGPNNGRNFYTC---PVKMGKQCNFFQWA 538
Score = 31.2 bits (69), Expect = 6.2
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 10/48 (20%)
Query: 51 YHHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEWA 98
+H PC ++ +V K G +G F+ C + R +C++FEWA
Sbjct: 455 HHRPC-------TQRVVTKEGENKGRQFYTC---SLPRETQCNFFEWA 492
>UniRef100_Q8C133 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
library, clone:4732486H02 product:hypothetical
Exonuclease containing protein, full insert sequence
[Mus musculus]
Length = 688
Score = 36.2 bits (82), Expect = 0.19
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGC--GNWTATRGARCHYFEW 97
P C CG +S R +V GP G F+ C G + R C YF+W
Sbjct: 592 PLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKC-CGYFKW 636
>UniRef100_Q6ZPP5 MKIAA1504 protein [Mus musculus]
Length = 480
Score = 36.2 bits (82), Expect = 0.19
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGC--GNWTATRGARCHYFEW 97
P C CG +S R +V GP G F+ C G + R C YF+W
Sbjct: 384 PLCKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDRKC-CGYFKW 428
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.325 0.137 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,320,558
Number of Sequences: 2790947
Number of extensions: 6834661
Number of successful extensions: 15771
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 15721
Number of HSP's gapped (non-prelim): 75
length of query: 100
length of database: 848,049,833
effective HSP length: 76
effective length of query: 24
effective length of database: 635,937,861
effective search space: 15262508664
effective search space used: 15262508664
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146862.9