BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146862.17 + phase: 0
(310 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9M904 Putative tRNA pseudouridine synthase [Arabidops... 408 e-113
UniRef100_Q6MEE7 tRNA pseudouridine synthase A 1 [Parachlamydia ... 195 1e-48
UniRef100_Q8R7Y7 tRNA pseudouridine synthase A [Thermoanaerobact... 171 2e-41
UniRef100_Q8XLQ0 tRNA pseudouridine synthase A 1 [Clostridium pe... 171 2e-41
UniRef100_Q8CXP1 tRNA pseudouridine synthase A [Oceanobacillus i... 170 5e-41
UniRef100_P70973 tRNA pseudouridine synthase A [Bacillus subtilis] 169 9e-41
UniRef100_Q9Z7X4 tRNA pseudouridine synthase A [Chlamydia pneumo... 168 2e-40
UniRef100_Q9PJT0 tRNA pseudouridine synthase A [Chlamydia murida... 166 6e-40
UniRef100_Q814C2 tRNA pseudouridine synthase A 1 [Bacillus cereus] 166 6e-40
UniRef100_Q893H3 tRNA pseudouridine synthase A 1 [Clostridium te... 166 7e-40
UniRef100_Q73F64 tRNA pseudouridine synthase A 1 [Bacillus cereus] 165 1e-39
UniRef100_UPI00003CC476 UPI00003CC476 UniRef100 entry 164 2e-39
UniRef100_Q63H59 Pseudouridylate synthase [Bacillus cereus] 164 3e-39
UniRef100_UPI00003CBB48 UPI00003CBB48 UniRef100 entry 163 6e-39
UniRef100_O84469 tRNA pseudouridine synthase A [Chlamydia tracho... 162 1e-38
UniRef100_Q8XHV5 tRNA pseudouridine synthase A 2 [Clostridium pe... 160 5e-38
UniRef100_Q65P74 TruA [Bacillus licheniformis] 159 7e-38
UniRef100_Q890R5 tRNA pseudouridine synthase A 2 [Clostridium te... 159 1e-37
UniRef100_Q813Z9 tRNA pseudouridine synthase A 2 [Bacillus cereus] 159 1e-37
UniRef100_UPI0000318600 UPI0000318600 UniRef100 entry 158 2e-37
>UniRef100_Q9M904 Putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 298
Score = 408 bits (1049), Expect = e-113
Identities = 199/293 (67%), Positives = 234/293 (78%), Gaps = 3/293 (1%)
Query: 20 TSLLSPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGA 79
+S+ + YKWRL+++YDGTR+AGWQYQESPPT+Q +EKALI+ T+L RK+LQL+GA
Sbjct: 6 SSVKVSDSGAYKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGA 65
Query: 80 SRTDAGVHAWGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKS 139
RTDAGVHAWGQVAHF+TPFNY +LDS HAALNGLLP DIRVRE+S A EFHARFS S
Sbjct: 66 GRTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASS 125
Query: 140 KIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPD 199
K+Y Y+IY+DT MDPFQRH+AYH YKLN++ MREAA F+GKHDF+AF NA+ D +PD
Sbjct: 126 KVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPD 185
Query: 200 PVKHIFPIDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDR 259
P+K I DV +MG+LLQLEVEGSGFLYRQVRNMVALL+QIGKEA DIVP IL ++DR
Sbjct: 186 PLKTISRFDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDR 245
Query: 260 KELAKYCYYLP--PHGLCLVSINYNESHLLPPPGCPAKSFGMHHTIRKCKVVF 310
+ LAKY LP PHGLCLVS+ Y E HL P CP S G HHTI KCK+ F
Sbjct: 246 RVLAKYT-SLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTITKCKLPF 297
>UniRef100_Q6MEE7 tRNA pseudouridine synthase A 1 [Parachlamydia sp.]
Length = 256
Score = 195 bits (495), Expect = 1e-48
Identities = 98/255 (38%), Positives = 160/255 (62%), Gaps = 7/255 (2%)
Query: 32 WRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQ 91
++L ++YDGT Y+GWQ Q + ++Q +++AL L+++ + LVG+ RTDAGVHA GQ
Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEAL--CILLKKEKVVLVGSGRTDAGVHAKGQ 61
Query: 92 VAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
VAHF +Y +L +H +LNGLLP DIR++ + P S FH+++S K YHY ++ + +
Sbjct: 62 VAHFHFQ-DYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASH-NDRIPDPVKHIFPIDVK 210
MDPFQR +++H K++ +++AA F G HDFT+F N +H +PV+ ++ +D+K
Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180
Query: 211 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLP 270
L+LE EG GFLY+ VRN+V L+ + + + I A+++R++ + P
Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQAS---LAAP 237
Query: 271 PHGLCLVSINYNESH 285
P GL L+ + Y +
Sbjct: 238 PEGLFLIQVFYENEN 252
>UniRef100_Q8R7Y7 tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis]
Length = 240
Score = 171 bits (434), Expect = 2e-41
Identities = 103/248 (41%), Positives = 147/248 (58%), Gaps = 9/248 (3%)
Query: 34 LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVA 93
L++ YDGT Y GWQYQ++ TVQ +EKA+ + T + + L+G+SRTD GVHA QVA
Sbjct: 2 LIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTG---EKVNLIGSSRTDTGVHALYQVA 58
Query: 94 HFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMD 153
+F T + + ALN +LP D+ V + FHAR+S +SK Y Y I +
Sbjct: 59 NFKTKTKIPP-EKLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPM 117
Query: 154 PFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMG 213
P R++ +H Y L+ AM++AA +F G HDF+AF+ AS N ++ +PVK IF + V++ G
Sbjct: 118 PTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFK-ASGNKKV-NPVKTIFDLTVEKEG 175
Query: 214 ALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHG 273
L+++EVE GFLY VR +V L+ +G +P I+ S+DR K PP G
Sbjct: 176 DLIKIEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDR---TKAGITAPPQG 232
Query: 274 LCLVSINY 281
L LV I Y
Sbjct: 233 LYLVRIVY 240
>UniRef100_Q8XLQ0 tRNA pseudouridine synthase A 1 [Clostridium perfringens]
Length = 248
Score = 171 bits (434), Expect = 2e-41
Identities = 101/253 (39%), Positives = 143/253 (55%), Gaps = 13/253 (5%)
Query: 33 RLLLSYDGTRYAGWQYQESP----PTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHA 88
++ L YDG++Y GWQ Q TVQ +EK L TK+ +++QL+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 89 WGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYS 148
VA+F T + L+ + +N LP DIRV EI AS FHARF+VKSK Y Y I +
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 149 DTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPID 208
+ D F R +A+H KL+ AM E A+Y +G HDF +F + ++ ++ I I+
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNK--STLRTINSIE 178
Query: 209 VKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYY 268
E +L +++ G+GFL VR MV L+ +G P + IL + KE AK
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDIL---EAKERAKASEK 235
Query: 269 LPPHGLCLVSINY 281
P HGLCL+ +NY
Sbjct: 236 APAHGLCLLELNY 248
>UniRef100_Q8CXP1 tRNA pseudouridine synthase A [Oceanobacillus iheyensis]
Length = 253
Score = 170 bits (430), Expect = 5e-41
Identities = 94/249 (37%), Positives = 148/249 (58%), Gaps = 7/249 (2%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHF 95
+SYDG+ +AG+Q Q TVQ +EKAL K K +++ + RTD GVHA GQV HF
Sbjct: 8 VSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHK--GKSIRIQASGRTDTGVHAVGQVIHF 65
Query: 96 LTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPF 155
+P + A LN LLP D+R++++ + EFHAR+SVK K YHY + ++ + F
Sbjct: 66 DSPLEIPERNWKQA-LNTLLPDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNEEDPNVF 124
Query: 156 QRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGAL 215
QR + YH KL+ M+EA +Y G HDFT+F +A + + V+ ++ + + G
Sbjct: 125 QRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVK-GSKVRTLYHVSCHQTGTN 183
Query: 216 LQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLC 275
++ GSGFLY VR M+++L+ +GK P+ + +LAS++R+++ K + P GL
Sbjct: 184 IEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGK---TMAPQGLY 240
Query: 276 LVSINYNES 284
L ++Y E+
Sbjct: 241 LWRVSYEEN 249
>UniRef100_P70973 tRNA pseudouridine synthase A [Bacillus subtilis]
Length = 247
Score = 169 bits (428), Expect = 9e-41
Identities = 102/247 (41%), Positives = 141/247 (56%), Gaps = 7/247 (2%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHF 95
+SYDG + G+Q Q TVQ +EKAL K + + + +V + RTD+GVHA GQV HF
Sbjct: 7 ISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDR-IPVVSSGRTDSGVHAAGQVIHF 65
Query: 96 LTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDPF 155
TP + + ALN LLP DI V++ A FHARFS K Y Y +Y++ D F
Sbjct: 66 DTPLSIP-AERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTEKHPDVF 124
Query: 156 QRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGAL 215
+RH+AYH Y+LN MREAA++ IG HDFT+F + + D V+ I+ +D E
Sbjct: 125 KRHYAYHFSYRLNVQDMREAAKHPIGTHDFTSF--CAAKTEVQDKVRTIYELDWTETADG 182
Query: 216 LQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLC 275
LQ+ + GSGFLY VR + LL G PD V +L ++DR+ + P HGL
Sbjct: 183 LQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAERTA---PGHGLY 239
Query: 276 LVSINYN 282
L ++ Y+
Sbjct: 240 LWNVYYD 246
>UniRef100_Q9Z7X4 tRNA pseudouridine synthase A [Chlamydia pneumoniae]
Length = 267
Score = 168 bits (425), Expect = 2e-40
Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 9/252 (3%)
Query: 31 KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
K LL++Y GT Y+GWQ Q + ++Q +E +L + TK + L+ + RTDAGVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 91 QVAHFLTPFN--YDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYS 148
QVAHF P + + N + ALN +LP DI +R+++ FHAR+ +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTKKALNAILPKDIVIRDVALFDDNFHARYLTIAKEYRYSLSR 119
Query: 149 DTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPID 208
P+QRHF Y + ++ M+E A IG HDF +F N H V+ I+ +D
Sbjct: 120 LAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFAN--HGRDYNSTVRTIYTLD 177
Query: 209 VKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKE--LAKYC 266
+ + G L + G+GFLY+ VRN+V LL +GK A PP+ + IL ++R+E A
Sbjct: 178 IVDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPA 237
Query: 267 YYLPPHGLCLVS 278
Y L H +C S
Sbjct: 238 YGLSLHHVCYSS 249
>UniRef100_Q9PJT0 tRNA pseudouridine synthase A [Chlamydia muridarum]
Length = 267
Score = 166 bits (421), Expect = 6e-40
Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 10/250 (4%)
Query: 34 LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVA 93
L ++Y GT Y+GWQYQ + ++Q +E L K+ R + ++ + RTDAGVHA GQVA
Sbjct: 7 LRIAYQGTAYSGWQYQPNALSIQEVLETLL---QKISRTRISVIASGRTDAGVHAQGQVA 63
Query: 94 HFLTPFN--YDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
HF P + + + + LN LLP DI +R++ + +FH+RFS +K YHY +
Sbjct: 64 HFCCPDHPHFSDPGQIKKMLNALLPHDIVIRDVIATNEDFHSRFSAITKEYHYTLSLLPK 123
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKE 211
P R F + +KL +MREAA+Y +G HDF +F N V+ ++ +D+ E
Sbjct: 124 PLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGRE--YSSTVRTLYALDLLE 181
Query: 212 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPP 271
L+ + +G+GFLY+ VRN+V LL IGK PP+ H+L ++K+ K PP
Sbjct: 182 QEHLVTVICKGNGFLYKMVRNIVGALLDIGKGKYPPE---HLLEMLEKKDRKKGPPSAPP 238
Query: 272 HGLCLVSINY 281
+GL L + Y
Sbjct: 239 YGLSLHHVCY 248
>UniRef100_Q814C2 tRNA pseudouridine synthase A 1 [Bacillus cereus]
Length = 247
Score = 166 bits (421), Expect = 6e-40
Identities = 99/248 (39%), Positives = 144/248 (57%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q + TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPNHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + +A LN +LP DI +R++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
+ G+GFLY VR +V LL +G+ PD +P ILA ++R+ K P HGL
Sbjct: 182 EIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWEVNYN 246
>UniRef100_Q893H3 tRNA pseudouridine synthase A 1 [Clostridium tetani]
Length = 245
Score = 166 bits (420), Expect = 7e-40
Identities = 96/250 (38%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
Query: 33 RLLLSYDGTRYAGWQYQESPP-TVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQ 91
+++L YDGTRY GWQ Q+ T+Q +E L +K+ +D+Q++G RTDAGVHA
Sbjct: 5 KMILEYDGTRYKGWQKQKKDVLTIQDKIETVL---SKMTGEDIQVIGCGRTDAGVHAENY 61
Query: 92 VAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
VA+F T ++ +D + L LP DI V+ + S FHAR++VKSK Y Y+I ++
Sbjct: 62 VANFHTNCDF-TVDYMLDYLYEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKF 120
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKE 211
F + +AYH+ KLN +AM++AA + IG HDF +F N + ++ I I++ E
Sbjct: 121 RSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSK--STIRAIKYINITE 178
Query: 212 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPP 271
++ +EV G+GFL VR + LL++GKE P + +L + K+ A LP
Sbjct: 179 NQGIISIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKML---NEKKRADASLILPA 235
Query: 272 HGLCLVSINY 281
GLCL I Y
Sbjct: 236 KGLCLKDIQY 245
>UniRef100_Q73F64 tRNA pseudouridine synthase A 1 [Bacillus cereus]
Length = 247
Score = 165 bits (418), Expect = 1e-39
Identities = 100/248 (40%), Positives = 142/248 (56%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + + ALN +LP DI + ++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQW-NNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L A+R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
L G+GFLY VR +V LL +G+ PD +P ILA ++R+ K P HGL
Sbjct: 182 ELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWQVNYN 246
>UniRef100_UPI00003CC476 UPI00003CC476 UniRef100 entry
Length = 247
Score = 164 bits (416), Expect = 2e-39
Identities = 100/248 (40%), Positives = 142/248 (56%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + +A LN +LP DI + ++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLLSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
L G+GFLY VR +V LL IG+ PD +P ILA ++R+ K P HGL
Sbjct: 182 ELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWQVNYN 246
>UniRef100_Q63H59 Pseudouridylate synthase [Bacillus cereus]
Length = 247
Score = 164 bits (415), Expect = 3e-39
Identities = 99/248 (39%), Positives = 142/248 (56%), Gaps = 10/248 (4%)
Query: 36 LSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGAS-RTDAGVHAWGQVAH 94
++YDG + G+Q Q TVQ +EKAL KL + +L V AS RTD+ VHA GQV H
Sbjct: 8 VAYDGMHFCGYQIQPQHRTVQQEIEKAL---QKLHKGELVRVQASGRTDSTVHAKGQVIH 64
Query: 95 FLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIMDP 154
F TP + + +A LN +LP DI + ++ + EFHAR+ V+ K Y Y++ D
Sbjct: 65 FDTPLSLEEWQWSNA-LNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTADV 123
Query: 155 FQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEMGA 214
F+R++ Y Y L ++R+A YFIG HDFT+F +A + + D V+ I+ I++ E
Sbjct: 124 FRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQDD 181
Query: 215 LLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGL 274
L G+GFLY VR +V LL +G+ PD +P ILA ++R+ K P HGL
Sbjct: 182 ELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMA---PGHGL 238
Query: 275 CLVSINYN 282
L +NYN
Sbjct: 239 YLWQVNYN 246
>UniRef100_UPI00003CBB48 UPI00003CBB48 UniRef100 entry
Length = 245
Score = 163 bits (412), Expect = 6e-39
Identities = 83/232 (35%), Positives = 137/232 (58%), Gaps = 7/232 (3%)
Query: 32 WRLLLSYDGTRYAGWQ-YQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
++L + YDG R+ GWQ + T+Q +E + +++ K+++++G SRTDAGVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVI---SEMVGKEIEIIGCSRTDAGVHALN 60
Query: 91 QVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDT 150
QVA+F + V LN LP+DI + + FHAR++ K+K Y YKI+++
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 151 IMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVK 210
+PF R ++ H KLN +M+EAA++ +G HDFTAF NA + V+ ++ +DV
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKK--SMVREVYTLDVM 177
Query: 211 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKEL 262
E +Q+ V G+GFL+ VR +V L+++G + +PHIL ++ R ++
Sbjct: 178 EEAGCVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQI 229
>UniRef100_O84469 tRNA pseudouridine synthase A [Chlamydia trachomatis]
Length = 267
Score = 162 bits (410), Expect = 1e-38
Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 16/259 (6%)
Query: 34 LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVA 93
L ++Y GT Y+GWQYQ + ++Q +E L K+ + ++ + RTDAGVHA GQ+A
Sbjct: 7 LQIAYQGTSYSGWQYQPNALSIQEVLETIL---KKIAGFRISVISSGRTDAGVHAQGQIA 63
Query: 94 HFLTPFNYDNLD--SVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTI 151
HF P + D + LN LLP DI +R+ +FH+RFS +K Y Y +
Sbjct: 64 HFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTLSLLPK 123
Query: 152 MDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKE 211
P R F + YKLN A M+EAA+Y +G HDF +F N ++ ++ +D+ E
Sbjct: 124 PLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGRE--YSSTIRTLYTLDLSE 181
Query: 212 MGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPP 271
L+ + G+GFLY+ VRN+V LL IGK PP+ + +LA++DR+ K PP
Sbjct: 182 QEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRR---KGPPSAPP 238
Query: 272 HGLCLVSINYNESHLLPPP 290
+GL L + Y PPP
Sbjct: 239 YGLSLHHVCY------PPP 251
>UniRef100_Q8XHV5 tRNA pseudouridine synthase A 2 [Clostridium perfringens]
Length = 244
Score = 160 bits (404), Expect = 5e-38
Identities = 92/249 (36%), Positives = 141/249 (55%), Gaps = 9/249 (3%)
Query: 33 RLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQV 92
+L + YDGT Y GWQ Q T+Q VE+A+ + TK ++++++G+SRTD+GVHA V
Sbjct: 5 KLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTK---EEVEILGSSRTDSGVHAKAYV 61
Query: 93 AHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDTIM 152
A+F T N + AALN LP DI + + +FHAR+ K Y Y I +
Sbjct: 62 ANFKTNSNIPG-KNFKAALNSKLPKDIVIINSEEVAEDFHARYMTTGKTYCYTILNREEP 120
Query: 153 DPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVKEM 212
+R++ YH +L+ +M+EA +YF+GKHDF AF+ + V+ I I ++
Sbjct: 121 PALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRP--GGTVKTSVRTITDIHIETE 178
Query: 213 GALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPH 272
G +++ V GFLY VR +V LL++G+ P+ + ++ S DRK+ A C +PP
Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKK-AGIC--VPPT 235
Query: 273 GLCLVSINY 281
GLCL + Y
Sbjct: 236 GLCLEKVFY 244
>UniRef100_Q65P74 TruA [Bacillus licheniformis]
Length = 247
Score = 159 bits (403), Expect = 7e-38
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 7/252 (2%)
Query: 31 KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
+ + +SYDG + G+Q Q T+Q +EKAL K + + + +V + RTD+GVHA G
Sbjct: 2 RMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHKAKER-IPVVSSGRTDSGVHAVG 60
Query: 91 QVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDT 150
Q HF +P + +A LN LLP DI VR+ + +FHARFS K K Y Y IY
Sbjct: 61 QTIHFDSPLSIPEAKWPYA-LNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRGR 119
Query: 151 IMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVK 210
D F+R++AYH Y L+ ++EA+RY +G HDFT+F + + D V+ + ++
Sbjct: 120 HPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSF--CATKTEVKDKVRTVHELEWS 177
Query: 211 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLP 270
+ G LQ+ + GSGFLY VR + LL +G P + ++ +++R + P
Sbjct: 178 DTGDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGRTA---P 234
Query: 271 PHGLCLVSINYN 282
HGL L + Y+
Sbjct: 235 AHGLYLWRVIYD 246
>UniRef100_Q890R5 tRNA pseudouridine synthase A 2 [Clostridium tetani]
Length = 248
Score = 159 bits (401), Expect = 1e-37
Identities = 95/252 (37%), Positives = 140/252 (54%), Gaps = 11/252 (4%)
Query: 33 RLLLSYDGTRYAGWQYQESP--PTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
RL + YDGT Y+GWQ Q+ T+Q ++EKA+ ATK ++++L+G+SRTDAGVHA
Sbjct: 6 RLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATK---EEVELIGSSRTDAGVHALA 62
Query: 91 QVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDT 150
A+F T HA LN LP DI + E EFH+RF K Y YKI +
Sbjct: 63 YTANFKTCSTIPGEKFKHA-LNRFLPEDIVILESEEVPMEFHSRFDCIGKTYVYKILNRP 121
Query: 151 IMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVK 210
+ P QR++ YH +L+ +M EA+++ IG HDF AF+ + N + V+ I I++
Sbjct: 122 LFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGN--LKTTVRTITNINIL 179
Query: 211 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLP 270
+ ++++ V G GFLY VR + L+++G P+ + IL S+DR K P
Sbjct: 180 KSNDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDR---CKAGMCAP 236
Query: 271 PHGLCLVSINYN 282
GL L + YN
Sbjct: 237 ARGLYLKELFYN 248
>UniRef100_Q813Z9 tRNA pseudouridine synthase A 2 [Bacillus cereus]
Length = 245
Score = 159 bits (401), Expect = 1e-37
Identities = 81/234 (34%), Positives = 136/234 (57%), Gaps = 7/234 (2%)
Query: 30 YKWRLLLSYDGTRYAGWQ-YQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHA 88
+ ++L + YDG R+ GWQ + T+Q +E + +++ K+++++G SRTDAGVHA
Sbjct: 2 HNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVI---SEMVGKEIEIIGCSRTDAGVHA 58
Query: 89 WGQVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYS 148
QVA+F + V LN LP+DI + + FHAR++ K+K Y YKI++
Sbjct: 59 LNQVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWN 117
Query: 149 DTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPID 208
+ +PF R ++ H KLN +M+ AA++ +G HDFTAF NA + V+ ++ +D
Sbjct: 118 EEHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKK--SMVREVYTLD 175
Query: 209 VKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKEL 262
V E +Q+ V G+GFL+ VR +V L+++G + +P+IL + R ++
Sbjct: 176 VMEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQI 229
>UniRef100_UPI0000318600 UPI0000318600 UniRef100 entry
Length = 245
Score = 158 bits (400), Expect = 2e-37
Identities = 90/251 (35%), Positives = 141/251 (55%), Gaps = 9/251 (3%)
Query: 31 KWRLLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWG 90
K+ +++ Y+GT Y GWQ+Q++ ++Q +EKAL TK+ + + ++ + RTDAGVHA G
Sbjct: 4 KYLVIIEYEGTAYHGWQFQKNGISIQEVIEKAL---TKITKAETCVLSSGRTDAGVHAEG 60
Query: 91 QVAHFLTPFNYDNLDSVHAALNGLLPSDIRVREISPASAEFHARFSVKSKIYHYKIYSDT 150
AHF+T + + A LN LP DI V+E+ F+AR S + K+Y Y + +
Sbjct: 61 MPAHFVTESKMKPFEFLFA-LNSQLPLDITVKEVKKVPMSFNARGSARRKLYRYSVLNRE 119
Query: 151 IMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRIPDPVKHIFPIDVK 210
++ + L+ AAMR AA+YF+GKHDFT+F + N + P ++ + +++
Sbjct: 120 HPSALNYRRSWFIPHALDIAAMRRAAKYFVGKHDFTSFRAGNCNAKTP--IRILNRVEIF 177
Query: 211 EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLP 270
+ G LQ E EG GFL VRN+V L+ +G++ V IL +R+R P
Sbjct: 178 KQGCFLQFEFEGKGFLKHMVRNLVGTLVHVGRKKIFAREVKTILEARNRSIAGPTA---P 234
Query: 271 PHGLCLVSINY 281
GLCLV + Y
Sbjct: 235 AQGLCLVKVYY 245
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,243,723
Number of Sequences: 2790947
Number of extensions: 21486974
Number of successful extensions: 46911
Number of sequences better than 10.0: 800
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 44519
Number of HSP's gapped (non-prelim): 844
length of query: 310
length of database: 848,049,833
effective HSP length: 127
effective length of query: 183
effective length of database: 493,599,564
effective search space: 90328720212
effective search space used: 90328720212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC146862.17