
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146818.2 - phase: 0 /pseudo
(1427 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_UPI000026D23F UPI000026D23F UniRef100 entry 37 3.4
UniRef100_UPI0000363D11 UPI0000363D11 UniRef100 entry 37 5.7
>UniRef100_UPI000026D23F UPI000026D23F UniRef100 entry
Length = 170
Score = 37.4 bits (85), Expect = 3.4
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 780 VLSL*MSILLK*LFPGM*NFLIWNFLSIPLVLLQFPLHIFTLIVKLLTLCLLMTLL*ILL 839
+L L + +LL L P + L+ L + L+LL PL + L++ LL L LL+ LL +LL
Sbjct: 21 LLLLLLLLLLLLLLPLLLLLLLLLLLLLLLLLLLLPLLLLLLLLLLLLLLLLLLLLLLLL 80
Query: 840 KIMMRFLMKIHLLIL 854
++ L+ + LL+L
Sbjct: 81 LLLKLLLLLLLLLLL 95
>UniRef100_UPI0000363D11 UPI0000363D11 UniRef100 entry
Length = 224
Score = 36.6 bits (83), Expect = 5.7
Identities = 50/228 (21%), Positives = 106/228 (45%), Gaps = 18/228 (7%)
Query: 799 FLIWNFLSIPLVLLQFPLHIFTLIVKLLTLCLLMTLL*ILLKIMMRFLMKIHLLILKKGM 858
+L+ FL++ ++ L + L+V + L LLM L +L+ + +M ++LL++ +
Sbjct: 6 YLLMMFLNLLVIFLYLLMMFLYLLV--IFLYLLMMFLYVLVIFLYLLMMFLYLLVIFLYL 63
Query: 859 MKWSL*PPENPPEVLNHQFTYKIMSVIQQVVITL*QILLVIQLYLLNTVLMLTL*ILRLS 918
+ L L F Y +M + +VI L LL++ LYLL L L + L L
Sbjct: 64 LMMFL--------NLLVIFLYLLMMFLNLLVIFL--YLLMMFLYLLVIFLYLLMMFLNLL 113
Query: 919 PLVIFQLVKILGG*LLCRQR*RLLMQIILGNLLIFLQMLYP*VVNGYIRSKDMQMVP*NV 978
+ ++ L+ L ++ + + +++ L + + LY V+ Y+ + ++
Sbjct: 114 VIFLYLLMMFLNLLVIFLYLLMMFLYLLVIFLYLLMMFLYLLVIFLYLLMMFLNLLV--- 170
Query: 979 SKHVWLLKVLIKLKGLIILKHSPLLPSYPPLGYCLLLHLFMVGICINL 1026
++L +++ L L+I + ++ Y + LL +F+ + I L
Sbjct: 171 ---IFLYLLMMFLNVLVIFLYLLMMFLYLLRMFLYLLVMFLYLLVIFL 215
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.370 0.167 0.644
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,853,808,573
Number of Sequences: 2790947
Number of extensions: 62861429
Number of successful extensions: 294387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 294346
Number of HSP's gapped (non-prelim): 18
length of query: 1427
length of database: 848,049,833
effective HSP length: 140
effective length of query: 1287
effective length of database: 457,317,253
effective search space: 588567304611
effective search space used: 588567304611
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 81 (35.8 bits)
Medicago: description of AC146818.2