BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146817.2 + phase: 0
(145 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XVM5 OSJNBa0072K14.9 protein [Oryza sativa] 48 5e-05
UniRef100_Q9FLL9 Gb|AAB80666.1 [Arabidopsis thaliana] 47 7e-05
UniRef100_Q8GXK6 Hypothetical protein At5g41100/MEE6_17 [Arabido... 47 7e-05
UniRef100_Q8L7B9 Hypothetical protein At3g26910 [Arabidopsis tha... 45 3e-04
UniRef100_Q9LW19 Gb|AAB80666.1 [Arabidopsis thaliana] 45 3e-04
UniRef100_Q67UP1 Hydroxyproline-rich glycoprotein-like [Oryza sa... 42 0.003
UniRef100_Q67UP0 Hydroxyproline-rich glycoprotein-like [Oryza sa... 42 0.003
UniRef100_UPI000042895C UPI000042895C UniRef100 entry 36 0.20
UniRef100_Q8II98 Hypothetical protein [Plasmodium falciparum] 35 0.27
UniRef100_UPI00002F8979 UPI00002F8979 UniRef100 entry 35 0.45
UniRef100_UPI0000013CDD UPI0000013CDD UniRef100 entry 34 0.59
UniRef100_UPI000046B493 UPI000046B493 UniRef100 entry 34 0.77
UniRef100_UPI00003C2241 UPI00003C2241 UniRef100 entry 34 0.77
UniRef100_Q68XM7 DNA-directed RNA polymerase beta prime subunit ... 34 0.77
UniRef100_Q8I429 Hypothetical protein PFE0360c [Plasmodium falci... 34 0.77
UniRef100_Q6CJJ4 Kluyveromyces lactis strain NRRL Y-1140 chromos... 34 0.77
UniRef100_Q9ZE20 DNA-directed RNA polymerase beta' chain [Ricket... 34 0.77
UniRef100_UPI0000435DE3 UPI0000435DE3 UniRef100 entry 33 1.0
UniRef100_Q7PAT1 DNA-directed RNA polymerase beta prime chain [R... 33 1.0
UniRef100_Q9RH40 DNA-directed RNA polymerase beta' chain [Ricket... 33 1.0
>UniRef100_Q7XVM5 OSJNBa0072K14.9 protein [Oryza sativa]
Length = 624
Score = 47.8 bits (112), Expect = 5e-05
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 37 NQIFEDSNSL--KVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAA 94
N I S SL +++ + MK CD KR+ YE M +EKG+S K E ++S LQA
Sbjct: 114 NTITNPSESLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRHSKTETLSSEQLQAY 173
Query: 95 HDEYEEEATL 104
+Y+E+A L
Sbjct: 174 FLDYQEDAAL 183
>UniRef100_Q9FLL9 Gb|AAB80666.1 [Arabidopsis thaliana]
Length = 534
Score = 47.4 bits (111), Expect = 7e-05
Identities = 22/54 (40%), Positives = 37/54 (67%), Gaps = 1/54 (1%)
Query: 52 DNMKHHCDEKREVYEYMIIQP-KEKGKSNSGKGEHITSRPLQAAHDEYEEEATL 104
++MK C+EKR+V ++M+++ K+K + KGE + R L+ A DE ++EATL
Sbjct: 60 EDMKQQCEEKRDVVKHMLMEHVKDKVQVKGTKGERLIRRQLETARDELQDEATL 113
>UniRef100_Q8GXK6 Hypothetical protein At5g41100/MEE6_17 [Arabidopsis thaliana]
Length = 582
Score = 47.4 bits (111), Expect = 7e-05
Identities = 22/54 (40%), Positives = 37/54 (67%), Gaps = 1/54 (1%)
Query: 52 DNMKHHCDEKREVYEYMIIQP-KEKGKSNSGKGEHITSRPLQAAHDEYEEEATL 104
++MK C+EKR+V ++M+++ K+K + KGE + R L+ A DE ++EATL
Sbjct: 131 EDMKQQCEEKRDVVKHMLMEHVKDKVQVKGTKGERLIRRQLETARDELQDEATL 184
>UniRef100_Q8L7B9 Hypothetical protein At3g26910 [Arabidopsis thaliana]
Length = 608
Score = 45.4 bits (106), Expect = 3e-04
Identities = 22/53 (41%), Positives = 32/53 (59%), Gaps = 2/53 (3%)
Query: 52 DNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATL 104
++MK CD KR VYE ++ KEKG+ S KGE + A+ E+ +EAT+
Sbjct: 132 EDMKQQCDGKRNVYEMSLV--KEKGRPKSSKGERHIPPESRPAYSEFHDEATM 182
>UniRef100_Q9LW19 Gb|AAB80666.1 [Arabidopsis thaliana]
Length = 621
Score = 45.4 bits (106), Expect = 3e-04
Identities = 22/53 (41%), Positives = 32/53 (59%), Gaps = 2/53 (3%)
Query: 52 DNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATL 104
++MK CD KR VYE ++ KEKG+ S KGE + A+ E+ +EAT+
Sbjct: 132 EDMKQQCDGKRNVYEMSLV--KEKGRPKSSKGERHIPPESRPAYSEFHDEATM 182
>UniRef100_Q67UP1 Hydroxyproline-rich glycoprotein-like [Oryza sativa]
Length = 623
Score = 42.0 bits (97), Expect = 0.003
Identities = 20/53 (37%), Positives = 29/53 (53%)
Query: 52 DNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATL 104
+ MK CD KR+ YE M +KG S K E ++ L A+ EY+E++ L
Sbjct: 136 EEMKQQCDMKRDAYETMRASYSDKGGSRHSKTESFSTEQLDASFLEYQEDSAL 188
>UniRef100_Q67UP0 Hydroxyproline-rich glycoprotein-like [Oryza sativa]
Length = 320
Score = 42.0 bits (97), Expect = 0.003
Identities = 20/53 (37%), Positives = 29/53 (53%)
Query: 52 DNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATL 104
+ MK CD KR+ YE M +KG S K E ++ L A+ EY+E++ L
Sbjct: 136 EEMKQQCDMKRDAYETMRASYSDKGGSRHSKTESFSTEQLDASFLEYQEDSAL 188
>UniRef100_UPI000042895C UPI000042895C UniRef100 entry
Length = 704
Score = 35.8 bits (81), Expect = 0.20
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 24 GKFGPIRVPRGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNS--- 80
G GP + RG N++ E + L E+ KHH ++ + KEK S S
Sbjct: 145 GSRGPAKHRRGSNSKRLERQDELSSSEESRKKHH----GSIFGHSWSSNKEKDGSRSEEL 200
Query: 81 -GKGEHITSRPLQAAHDEYEEEATLAKQG 108
KG+ P + + +EYE L QG
Sbjct: 201 GEKGDKSYDSPSRESEEEYESGYRLNHQG 229
>UniRef100_Q8II98 Hypothetical protein [Plasmodium falciparum]
Length = 682
Score = 35.4 bits (80), Expect = 0.27
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 11 ALTSKVDKNIKKNGKFGPIRVPRGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEY 67
A + D NIK+ G G ++ +++ F D+ LK K N+ +CD K Y+Y
Sbjct: 358 ATQEREDANIKRGGTLGCDKIKEKESSEYFVDNKKLKNK-SSNLTDNCDNKINKYDY 413
>UniRef100_UPI00002F8979 UPI00002F8979 UniRef100 entry
Length = 187
Score = 34.7 bits (78), Expect = 0.45
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 13 TSKVDKNIKKN---------GKFGPIRVPRGVNNQIFED--SNSLKVKEKDNMKHHCDEK 61
+SKV KNI + G FG + RG IF + SNSLK+ +K+ ++K
Sbjct: 39 SSKVSKNINNSKVLDLFSGTGSFGIECLSRGAKEVIFFENYSNSLKILKKNIFNLKLEDK 98
Query: 62 REVYEYMIIQPKEKGKSN 79
+VYE KE +N
Sbjct: 99 SKVYESNAYNLKESNLNN 116
>UniRef100_UPI0000013CDD UPI0000013CDD UniRef100 entry
Length = 380
Score = 34.3 bits (77), Expect = 0.59
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 1 MRPSKLHQIAALTSKVDKNIKKNGKFGPIRVPRGVNN-------QIFEDSNSLKVKEKDN 53
++PSK + A + KV + + K + G ++P VN+ +I E+S + +++ +
Sbjct: 145 VKPSKTKEEAVVEEKVTEGLGKIPEEGQDQLPGNVNSDEEVEIEEIIEESRTKRLQR--S 202
Query: 54 MKHHCDE-KREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHI 112
K D K+ + + + K K K N K + T L+ + + K
Sbjct: 203 TKQQVDNIKKAFSKEQMEKTKTKTKENYEKTKQKTRENLEKTRQKTRDNLEKTKHSLE-- 260
Query: 113 AKLGK-GRRIKPLKHSNFNERNCRDKFRQ 140
K+GK G R+ P + ++ +DK ++
Sbjct: 261 KKIGKIGTRVTPNQERRAKMKSSKDKVKK 289
>UniRef100_UPI000046B493 UPI000046B493 UniRef100 entry
Length = 469
Score = 33.9 bits (76), Expect = 0.77
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 4 SKLHQIAALTSKVDKNIKKNGKFGPIRVPRGVNNQIFEDSNSLKVKEKDNMKHHCDEKRE 63
+K + ++ + K K I KN K+ + +P G ++I +L +K D K + E +
Sbjct: 118 NKNNILSCIDEKKKKKIDKNSKYKLVVLPNGKKHKI-----NLNIKLSDFQKLYISEDNK 172
Query: 64 VYEYMIIQPKEKGKSNSGKGEH-ITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIK 122
+EY++ K K N K + I R +Y EE T C + +
Sbjct: 173 SFEYLLRNMKNK---NIEKNMYSIIKRNEYNMKMDYIEECTKNGIKCDMLHMNKSENELY 229
Query: 123 PLKHSN 128
P++ SN
Sbjct: 230 PMRISN 235
>UniRef100_UPI00003C2241 UPI00003C2241 UniRef100 entry
Length = 426
Score = 33.9 bits (76), Expect = 0.77
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 28 PIRVPRGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHIT 87
P + + N+ E + KEK K + E+ E + P + + EHI
Sbjct: 132 PTKKEKKEKNEKKEKKEKKEKKEKKEKKEQKTQSEEIAEQVPESPSDTEIDSDDAEEHIQ 191
Query: 88 SRPLQAAHDE---------YEEEATLAKQ---GCPHIAKLGKGRRIKPLKH--SNFNE 131
P+QAA E E EA KQ G +I+++ G ++H SNF E
Sbjct: 192 DDPMQAADQEEKIIKPLSTTELEAFKKKQRKLGIVYISRIPPGMTPAKVRHILSNFGE 249
>UniRef100_Q68XM7 DNA-directed RNA polymerase beta prime subunit [Rickettsia typhi]
Length = 1372
Score = 33.9 bits (76), Expect = 0.77
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 67 YMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKH 126
Y+++ P G S KGE +T LQ A D+Y E+A A G I ++ K LK
Sbjct: 143 YVVVDP---GLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSKLKQ 199
Query: 127 SNFNE 131
++E
Sbjct: 200 ELYDE 204
>UniRef100_Q8I429 Hypothetical protein PFE0360c [Plasmodium falciparum]
Length = 893
Score = 33.9 bits (76), Expect = 0.77
Identities = 26/84 (30%), Positives = 38/84 (44%), Gaps = 7/84 (8%)
Query: 1 MRPSKLHQIAALTSKV----DKNIKKNGKFGPIRVPRGVNNQIFEDSNSLKVKEKDNMKH 56
M+ + H+I +TS D N N F + NN I+ N K K K+++K
Sbjct: 333 MKKLREHKIIIVTSSGKIYDDDNNNDNNNFYNDNI---YNNNIYNVHNDDKEKIKNHIKK 389
Query: 57 HCDEKREVYEYMIIQPKEKGKSNS 80
+ +YEY Q E+ KSNS
Sbjct: 390 KNKQNNYLYEYQRTQKDEEQKSNS 413
>UniRef100_Q6CJJ4 Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL
Y- 1140 of Kluyveromyces lactis [Kluyveromyces lactis]
Length = 326
Score = 33.9 bits (76), Expect = 0.77
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 4/87 (4%)
Query: 15 KVDKNIKKNGKFGPIRVPRGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKE 74
K DK KK K + + + ED + K +K N KH D++ E + + K
Sbjct: 197 KEDKKTKKEKK----KAKKEEEKKQKEDKKNKKHSDKKNKKHDDDDEYSEAEPSVTEEKR 252
Query: 75 KGKSNSGKGEHITSRPLQAAHDEYEEE 101
S + K H TS L+ + E + E
Sbjct: 253 VETSFTKKPHHTTSAALKEGYKEVKNE 279
>UniRef100_Q9ZE20 DNA-directed RNA polymerase beta' chain [Rickettsia prowazekii]
Length = 1372
Score = 33.9 bits (76), Expect = 0.77
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 67 YMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKH 126
Y+++ P G S KGE +T LQ A D+Y E+A A G I ++ K LK
Sbjct: 143 YVVVDP---GLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSKLKQ 199
Query: 127 SNFNE 131
++E
Sbjct: 200 ELYDE 204
>UniRef100_UPI0000435DE3 UPI0000435DE3 UniRef100 entry
Length = 330
Score = 33.5 bits (75), Expect = 1.0
Identities = 34/146 (23%), Positives = 63/146 (42%), Gaps = 13/146 (8%)
Query: 8 QIAALTSKVDKNIKKN-GKFGPIRVPRGVNNQIFEDSNSL---KVKEKDNMKHHCDEKRE 63
Q+A L K+D +K N G F ++ R + + E + +V+E + +E++E
Sbjct: 171 QVADLLEKIDNMVKANGGSFYSCKMFREMERKKQEQQMKILMDRVRETEEEMKKLEEEKE 230
Query: 64 VYEYMIIQPKEKGKSNSGKGEHITSRPL-------QAAHDEYEEEATLAKQGCPHIAKLG 116
+ M+ + ++ + E R + + DE + E +KQ I K
Sbjct: 231 RIKMMMKEEQQNQEKERKIREEELKREIREQEKQQRETRDEMKRERETSKQEIEEIRKEK 290
Query: 117 K--GRRIKPLKHSNFNERNCRDKFRQ 140
+ + I LK+S NER D +R+
Sbjct: 291 EKLQKEIDLLKNSIENERQNHDNYRK 316
>UniRef100_Q7PAT1 DNA-directed RNA polymerase beta prime chain [Rickettsia sibirica]
Length = 1372
Score = 33.5 bits (75), Expect = 1.0
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Query: 67 YMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKH 126
Y+++ P G S KGE +T LQ A D+Y E+A A G I ++ K LK
Sbjct: 143 YVVVDP---GLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSKLKQ 199
Query: 127 SNFNE 131
+ E
Sbjct: 200 ELYEE 204
>UniRef100_Q9RH40 DNA-directed RNA polymerase beta' chain [Rickettsia conorii]
Length = 1372
Score = 33.5 bits (75), Expect = 1.0
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Query: 67 YMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKH 126
Y+++ P G S KGE +T LQ A D+Y E+A A G I ++ K LK
Sbjct: 143 YVVVDP---GLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSKLKQ 199
Query: 127 SNFNE 131
+ E
Sbjct: 200 ELYEE 204
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.315 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,097,803
Number of Sequences: 2790947
Number of extensions: 10932021
Number of successful extensions: 21874
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 21823
Number of HSP's gapped (non-prelim): 107
length of query: 145
length of database: 848,049,833
effective HSP length: 121
effective length of query: 24
effective length of database: 510,345,246
effective search space: 12248285904
effective search space used: 12248285904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146817.2