BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146794.6 + phase: 0 
         (1018 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]                  550  e-155
UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]                  544  e-153
UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]                  540  e-151
UniRef100_Q40369 RPE15 protein [Medicago sativa]                      261  6e-68
UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solan...   224  1e-56
UniRef100_Q6L419 Putative gag polyprotein [Solanum demissum]          152  6e-35
UniRef100_Q7XU13 OSJNBa0091D06.8 protein [Oryza sativa]               112  6e-23
UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic ...   111  1e-22
UniRef100_Q5XWL3 Gag-pol polyprotein-like [Solanum tuberosum]         105  7e-21
UniRef100_Q949K7 Putative gag polyprotein [Cicer arietinum]            99  5e-19
UniRef100_Q6L420 Putative polyprotein [Solanum demissum]               88  1e-15
UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sa...    82  6e-14
UniRef100_Q9ZQ67 Putative retroelement pol polyprotein [Arabidop...    81  2e-13
UniRef100_Q6ASW9 Reverse transcriptase (RNA-dependent DNA polyme...    81  2e-13
UniRef100_Q6AVG0 Putative retrotransposon gag protein [Oryza sat...    80  3e-13
UniRef100_Q7X6I4 OSJNBa0039G19.2 protein [Oryza sativa]                79  5e-13
UniRef100_O82612 T5H22.5 protein [Arabidopsis thaliana]                78  2e-12
UniRef100_Q9SYC1 F11M15.5 protein [Arabidopsis thaliana]               78  2e-12
UniRef100_Q7XFQ0 Putative retroelement [Oryza sativa]                  77  2e-12
UniRef100_Q9AYA0 Putative polyprotein [Oryza sativa]                   77  3e-12

>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
          Length = 1814

 Score =  550 bits (1417), Expect = e-155
 Identities = 363/1013 (35%), Positives = 536/1013 (52%), Gaps = 108/1013 (10%)

Query: 77   EERMEELAKELRHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQNHI 136
            + +++ LA+++R        N+  F   ++ LV  + +P KFK P FD+YNG +CP+ H+
Sbjct: 131  DRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHV 187

Query: 137  IKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTR 196
              Y RK+  Y D++ + ++ FQDSL   + +WY  L ++ I  + +L  AF   Y  N  
Sbjct: 188  QAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSIRCWKDLGEAFLRQYKHNMD 247

Query: 197  LKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMII 256
            + P+R  L+SL QK  ESF+EYAQRWR  AAR+ P + E E+T  F+ TL+  +++RM  
Sbjct: 248  MAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGS 307

Query: 257  AAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
                +FS++V  G R E  ++ G I     ++  ++SK+   G  +++E E   V     
Sbjct: 308  CPFVSFSDVVICGERTESLIKTGKI----QDAGSSSSKKPFAGAPRRREGETNAVQYRRD 363

Query: 317  QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
            Q+ +    + A  +P                     P P  Q Q  V    QQ +QQ P 
Sbjct: 364  QNRSQRCQVAAVTIPA--------------------PQPRQQQQQRVQQPQQQQQQQRPY 403

Query: 377  QQQQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQG 436
            Q +Q+    R  F  +PM YAELLP LL  G    R    PP  LPP + ++++CDFH G
Sbjct: 404  QPRQRMPDRR--FDSLPMSYAELLPELLRLGMVELRT-MAPPTVLPPGYDANVRCDFHSG 460

Query: 437  ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCE-EALRL 493
            A GH  E C AL++ V+ LID   + F   VP+V++NP+P H    VN IE  E E L +
Sbjct: 461  APGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVV 519

Query: 494  DVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCFTVQDDIQSLMNDNFL----- 548
            +V +V T L+ +  +L    ++S     CLGC  +  GC  ++  IQ +M++  L     
Sbjct: 520  NVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQLRTGIQGMMDEGCLQFSRA 579

Query: 549  -----TVSDVCVI-------------VPVFHDPPVK-SMPLKENAEPLVIRLPGLVPYTS 589
                 TVS + +               P  +  PV  S+P+  +A P  I   G     +
Sbjct: 580  VKDRGTVSTITIYFKPSEGRGQRVVSAPATNGTPVTISVPVTISA-PTTIAASGRRAVEN 638

Query: 590  DRAIPYKYNATIIENG--------VEVPLVSLAVMN----------NTAEGTSAALRSGR 631
             RA+P+KY+     N         V    V++ + N          +   G     RSGR
Sbjct: 639  SRAVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGR 698

Query: 632  V---RPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKI 688
            +   +P  D  A        K    +  P+ ++   P  S E  +++E +++IK+SDYKI
Sbjct: 699  LFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--PEGSFE-KDVEEFMKIIKKSDYKI 755

Query: 689  VDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWF 748
            VDQL QTPSKISILSLLL S AHR+ LLK+L  AYV  E++V+    ++ N++    + F
Sbjct: 756  VDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGF 815

Query: 749  SEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRST 808
            +  +L   G++HN ALHI++ CK  +LS+VLVDTGSSLNV+PK  L ++   G  L  S 
Sbjct: 816  TNLDLTPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVLTPSD 875

Query: 809  FLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTL 868
             +V+AFDG+++SV GE+ LP+ IGPE F I F VMDI  +YSCLLGRPWIH AGAV+STL
Sbjct: 876  LIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTL 935

Query: 869  HQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG---TEPK 921
            HQKLK+  +G++VT+ GEE  LVS LSSF  +E  G    T   AF+ + +E     E +
Sbjct: 936  HQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQR 995

Query: 922  RDGTAMASLKDAQRAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----AFYSA 976
            + G ++ S K A+  V  G+A GWG+++ L   + K G+G+ P      G      F SA
Sbjct: 996  KPGASITSYKQAKEVVDSGKAEGWGKMVYLPVKEDKFGVGYEPLQAEQNGQAGPSTFTSA 1055

Query: 977  GFVNAITEEATGFGP-----------RPVFVTPGGIARDWDAIDIPSIMHVSE 1018
            G +N     ATG              RP    PGG   +W A ++  +  ++E
Sbjct: 1056 GLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWTAEEVVQVTLLTE 1106


>UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]
          Length = 1105

 Score =  544 bits (1401), Expect = e-153
 Identities = 351/972 (36%), Positives = 519/972 (53%), Gaps = 95/972 (9%)

Query: 77   EERMEELAKELRHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQNHI 136
            + +++ LA+++R        N+ SF   ++ LV  + +P KFK P FD+YN  +CP+ H+
Sbjct: 131  DRKVDALAEKIR---AMECQNSLSFDVTNMGLVEGLRIPYKFKAPSFDKYNDTSCPRTHV 187

Query: 137  IKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTR 196
              Y RK+  Y D++ + ++ FQDSL   + +WY  L ++ I  + +L  AF   Y  N  
Sbjct: 188  QAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDSIRCWRDLGEAFLRQYKHNMD 247

Query: 197  LKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMII 256
            + P+R  L+SL QK  ESF+EYAQRWR  AAR+ P + E E+T  F+ TL+  +++RM  
Sbjct: 248  MAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGS 307

Query: 257  AAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
                +FS++V  G R E  ++ G I     +   ++SK+   G  +++E E  +V     
Sbjct: 308  CPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAGAPRRREGETNVVQHRRD 363

Query: 317  QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
            Q+        A  +P                     P P  Q Q  V    QQ +QQ P 
Sbjct: 364  QNRIEYRQAAAVTIPA--------------------PQPRQQQQQRVQQPQQQQQQQRPY 403

Query: 377  QQQQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQG 436
            Q +Q+    R  F  +PM YAELLP LL  G    R    PP  LPP + ++++CDFH G
Sbjct: 404  QPRQRMPDRR--FDSLPMSYAELLPELLRLGMVELRT-MAPPTVLPPGYDANVRCDFHSG 460

Query: 437  ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCE-EALRL 493
            A GH  E C AL++ V+ LID   + F   VP+V++NP+P H    VN IE  E E L +
Sbjct: 461  APGHHTEKCRALQHKVQDLIDAKAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAEDLVV 519

Query: 494  DVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCFTVQDDIQSLMNDNFL----- 548
            +V +V T L+ +  +L    ++S     CLGC  +  GC  ++  IQ +M++  L     
Sbjct: 520  NVDDVQTSLLVVKGRLLNGGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQFSRA 579

Query: 549  -----TVSDVCVI-------------VPVFHDPPVK-SMPLKENAEPLVIRLPGLVPYTS 589
                 TVS + +               P  +D PV  S+P+  +A P  I   G     +
Sbjct: 580  VKDRGTVSTITIYFKPTEGRGQRVVSAPATNDTPVTISVPVTISA-PTTIVASGRRAVEN 638

Query: 590  DRAIPYKYNATIIENG--------VEVPLVSLAVMN----------NTAEGTSAALRSGR 631
             R +P+KY+     N         V    V++ + N          +   G     RSGR
Sbjct: 639  SRVVPWKYDNAYRSNRRAESQTRPVNQAPVTIGLPNRVPATVGPAVDNVGGPGGFTRSGR 698

Query: 632  V---RPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKI 688
            +   +P  D  A        K    +  P+ ++  +      + +++E +++IK+SDYKI
Sbjct: 699  LFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEAPE---GTFEKDVEEFMKIIKKSDYKI 755

Query: 689  VDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWF 748
            VDQL QTPSKISILSLL+ S AHR+ LLK+L  AYV  E++V+    ++ N++    + F
Sbjct: 756  VDQLNQTPSKISILSLLMCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRHGVGF 815

Query: 749  SEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRST 808
            +  +LP  G++HN ALHI++ CK  +LS+VLVDTGSSLNV+P   L ++   G  L  S 
Sbjct: 816  TNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPNQILKKIDVEGFVLTPSD 875

Query: 809  FLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTL 868
             +V+AFDG+++SV GE+ LP+ IGPE F I F VMDI  +YSCLLGRPWIH AGAV+STL
Sbjct: 876  LIVRAFDGSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAVSSTL 935

Query: 869  HQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG---TEPK 921
            HQKLK+  +G++VT+ GEE  LVS LSSF  +E  G    T   AF+ + +E     E +
Sbjct: 936  HQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQAFETVALEKVAYAEQR 995

Query: 922  RDGTAMASLKDAQRAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----AFYSA 976
            + G ++ S K A+  V  G+A GWG+++ L   + K G+G+ P      G      F SA
Sbjct: 996  KPGASITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLRAEQNGQAGPSTFTSA 1055

Query: 977  GFVNAITEEATG 988
            G +N     ATG
Sbjct: 1056 GLMNHGDVSATG 1067


>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
          Length = 2262

 Score =  540 bits (1390), Expect = e-151
 Identities = 365/1017 (35%), Positives = 529/1017 (51%), Gaps = 117/1017 (11%)

Query: 77   EERMEELAKELRHEIKANQGNADSFKTQDLCLVPKVDVPKKFKIPDFDRYNGLTCPQNHI 136
            + +++ LA+++R        N+  F   ++ LV  + +P KFK P FD+YNG +CP+ H+
Sbjct: 130  DRKVDALAEKIR---AMECQNSLGFDVTNMGLVEGLRIPYKFKAPSFDKYNGTSCPRTHV 186

Query: 137  IKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLSKNDIHTFDELAAAFKSHYGFNTR 196
              Y RK+  Y D++ + ++ FQDSL   + +WY  L  + I  + +L  AF   Y  N  
Sbjct: 187  QAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWRDLGEAFLRQYKHNMD 246

Query: 197  LKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMII 256
            + P+R  L+SL QK  ESF+EYAQRWR  AAR+ P + E E+T  F+ TL+  +++RM  
Sbjct: 247  MAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDMFIGTLQGVFMDRMGS 306

Query: 257  AAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
                +FS++V  G R E  ++ G I     +   ++SK+   G  +++E E   V     
Sbjct: 307  CPFGSFSDVVICGERTESLIKTGKI----QDVGSSSSKKPFAGAPRRREGETNAVQHRRD 362

Query: 317  QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
            Q+        A  +P   P     Q    P                     QQ +QQ P 
Sbjct: 363  QNRIEYRQAAAVTIPAPQPRQQQQQRVQQP---------------------QQQQQQRPY 401

Query: 377  QQQQQHQQARPTFPPIPMLYAELLPTLLHRGH---CTTRQGKPPPDPLPPRFRSDLKCDF 433
            Q +Q+    R  F  +PM YAELLP LL  G    CT      PP  LPP + ++++CDF
Sbjct: 402  QPRQRMPDRR--FDSLPMSYAELLPELLRLGLVELCTMA----PPTVLPPGYDANVRCDF 455

Query: 434  HQGALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCE-EA 490
            H GA GH  E C AL++ V+ LID   + F   VP+V++NP+P H    VN IE  E E 
Sbjct: 456  HSGAPGHHTEKCRALQHKVQDLIDANAINFAP-VPNVVNNPMPQHGGHRVNNIEGKEAED 514

Query: 491  LRLDVRNVATPLVPLHIKLCKASLFSHDHAKCLGCLRNPLGCFTVQDDIQSLMNDNFLTV 550
            L  +V +V T L+ +  +L    ++S     CLGC  +  GC  ++  IQ +M++  L  
Sbjct: 515  LVDNVDDVQTSLLVVKSRLLNEGVYSGCDEDCLGCAESENGCDQLRAGIQGMMDEGCLQF 574

Query: 551  S-------DVCVIVPVF-----HDPPVKSMPLKENAEPLVIRLPGLV--PYT-------- 588
            S        V  I   F     H   V S P   N  P+ I +P  +  P T        
Sbjct: 575  SRAVKDRGTVSTITIYFKPSEGHGQRVVSAPAT-NGTPVTIPVPVTISAPTTIVASGRRA 633

Query: 589  --SDRAIPYKY-----------------NATIIENGV--EVPLVSLAVMNNTAEGTSAAL 627
              + RA+P+KY                 N T +  G+   VP      ++N   G     
Sbjct: 634  VENSRAVPWKYDNAYRSNRRVESQTKPVNQTPVTIGLANRVPATVGPAVDNVG-GPGGFT 692

Query: 628  RSGRV---RPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRS 684
            RSGR+   +P  D  A        K    +  P+ ++   P  S E  +++E +++IK+S
Sbjct: 693  RSGRLFAPQPLRDNNAEALAKAKGKQAVVEEEPVQKEA--PEGSFE-KDVEEFMKMIKKS 749

Query: 685  DYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACS 744
            DYKIVDQL QTPSKISILSLLL S AHR+ LLK+L  AYV  E++V+    ++ N++   
Sbjct: 750  DYKIVDQLNQTPSKISILSLLLCSEAHRNALLKMLNLAYVPQEISVNQLEGVMANVSTRH 809

Query: 745  NLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPL 804
             + F+  +LP  G++HN ALHI++ CK  +LS+VLVDTGSSLNV+PK  L ++   G  L
Sbjct: 810  GVGFTNLDLPPEGRNHNKALHITMECKGAVLSHVLVDTGSSLNVLPKQILKKIDVEGFVL 869

Query: 805  RRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAV 864
              S  +V+AFD +++SV GE+ LP+ IGPE F I F VMDI  +YSCLLGRPWIH AGAV
Sbjct: 870  TPSDLIVRAFDRSKRSVCGEVTLPVKIGPEVFDIIFYVMDIQPAYSCLLGRPWIHAAGAV 929

Query: 865  TSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEA-GSAEGT---AFQGLTVEG--- 917
            +STLHQKLK+  +G++VT+ GEE  LVS LSSF  +E  G    T    F+ + +E    
Sbjct: 930  SSTLHQKLKYVWNGQIVTVCGEEEILVSHLSSFKYVEVDGEIHETLCQVFETVALEKVAY 989

Query: 918  TEPKRDGTAMASLKDAQRAVQEGQAAGWGRLIQLRENKHKEGLGFSPTSGVSTG-----A 972
             E ++ G ++ S K A+  V  G+A GWG+++ L   + K G+G+ P      G      
Sbjct: 990  AEQRKPGVSITSYKQAKEVVDSGKAEGWGKMVDLPVKEDKFGVGYEPLQAEQNGQAGPST 1049

Query: 973  FYSAGFVNAITEEATGFGP-----------RPVFVTPGGIARDWDAIDIPSIMHVSE 1018
            F SAG +N     ATG              RP    PGG   +W A ++  +  ++E
Sbjct: 1050 FTSAGLMNHGDVSATGSEDCDSDCDLDNWVRP--CAPGGSINNWTAEEVVQVTLLTE 1104


>UniRef100_Q40369 RPE15 protein [Medicago sativa]
          Length = 219

 Score =  261 bits (668), Expect = 6e-68
 Identities = 133/192 (69%), Positives = 152/192 (78%), Gaps = 10/192 (5%)

Query: 225 AAARITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFE 284
           AAAR++P LDEEE+TQTFLKTLKK++ ERMI++APNNFS+MVTMGTRLEEAVREGIIV E
Sbjct: 13  AAARVSPRLDEEELTQTFLKTLKKEHKERMIVSAPNNFSDMVTMGTRLEEAVREGIIVLE 72

Query: 285 KAESSVNASKRYGNGHHKKKET-EVGMVSAGAGQSMATVAPINAAQMPPSYPYAPYSQHP 343
           K E S +A K+YGNGHHK+KE+ +VGMVS           P+NA Q+P  Y Y   SQHP
Sbjct: 73  KGECSASAPKKYGNGHHKRKESKKVGMVSGNHD------TPVNATQLPLPYQYMQISQHP 126

Query: 344 FFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQA-RPT--FPPIPMLYAELL 400
           FFPPFY QYPLPPGQP VPVNA+AQQ++ Q P QQQQQ QQ  RP   FPPIPM YAELL
Sbjct: 127 FFPPFYQQYPLPPGQPPVPVNAMAQQVQHQPPAQQQQQQQQGPRPKTYFPPIPMRYAELL 186

Query: 401 PTLLHRGHCTTR 412
           PTLL +GHC TR
Sbjct: 187 PTLLAKGHCVTR 198


>UniRef100_Q60D62 Putative gag/pol polyprotein, 3'-partial [Solanum demissum]
          Length = 1784

 Score =  224 bits (570), Expect = 1e-56
 Identities = 185/615 (30%), Positives = 279/615 (45%), Gaps = 102/615 (16%)

Query: 385  ARPTFPPIPMLYAEL---LPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHD 441
            A+  F PI   YA L   L TL        +   PPP  L         C +   A GH+
Sbjct: 888  AKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPPRNLD----YSQHCAYCSDAPGHN 943

Query: 442  VEGCYALKYIVKKLIDQGKLTFEN-NVPHVLDNPLPNHATVNMIEVCEEALRLDVRNVAT 500
            +E C+ LK  ++ LID  ++  E+ N P++  NPLP H   NM+E+       +   VA 
Sbjct: 944  IERCWYLKKAIQDLIDTRRIIVESPNGPNINQNPLPRHTETNMLEMVN-----NHEEVAV 998

Query: 501  PLVPLHIKL---CKASLFSHDHAKCLGCLRNPLGCFTVQD----------DIQSLMNDNF 547
            P  P+ +K+    ++S    D  K +     P G  +  +           I+  + D +
Sbjct: 999  PYKPI-LKVETGMESSTNVIDLTKIM-----PSGAESTSEKLTPSSAPILTIKGALEDVW 1052

Query: 548  LTVSDVCVIVPVFHDPPVKSMPLKENAEPLVIRLPGLVPYTSDRAIPYKYNATIIE-NGV 606
             +  +  ++VP   D P+  +       P++IR    +P T+ +A+P+ Y  T++   G 
Sbjct: 1053 ASQREARLVVPRGPDKPILIVQ-GAYIPPVIIRPVSQLPMTNPKAVPWNYEPTVVTYEGK 1111

Query: 607  EVPLVSLAVMNNTAEGTSAALRSGRVRPPIDKTATPTVPPIDKTTPTDVSPINRDVSQPG 666
            E+        N   +      RSGR                     T++     D  Q  
Sbjct: 1112 EI--------NEEVDEIGGMTRSGRC-----------------YALTELRKNKNDQMQVK 1146

Query: 667  RSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDH 726
              + +   +E LR +K SDY IV+QL +TP++IS+LSLL+ S AHR  ++K+L +A+V +
Sbjct: 1147 SPVTEGEAEEFLRKMKLSDYSIVEQLRKTPAQISLLSLLIHSDAHRKAVIKILNEAHVPN 1206

Query: 727  EVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSL 786
            EVTV     I G I   + + FS+DELP                            GS  
Sbjct: 1207 EVTVSQLEKIAGRIFEVNRITFSDDELPV--------------------------EGSGA 1240

Query: 787  NVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDIN 846
            N+ P STL +L+     +R +   V+AFDGT+   +GEI+L + IG   F + FQV++IN
Sbjct: 1241 NICPLSTLQKLNVNVERVRPNNVCVRAFDGTKTDAIGEIELILKIGHVDFTVNFQVLNIN 1300

Query: 847  ASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSA- 905
            ASY+ LLGRPW+H AGAV STLHQ +KF    + V +H E    V + SS   I+A +  
Sbjct: 1301 ASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDRQEVIVHSEGDLSVYKDSSLPFIKANNEN 1360

Query: 906  EGTAFQGLTV-------EGTEPKRDGTAMASLKDAQRAVQEGQAAGWGRLIQL------- 951
            E   +Q   V       EG    +    MAS+      ++ G   G G  I L       
Sbjct: 1361 EALVYQAFEVVVVEHILEGNLISKPQLPMASVMMVNEMLKHGFEPGKGLGIFLQGRAYPV 1420

Query: 952  --RENKHKEGLGFSP 964
              R++    GLG+ P
Sbjct: 1421 SPRKSLGTFGLGYKP 1435



 Score =  112 bits (280), Expect = 6e-23
 Identities = 100/368 (27%), Positives = 159/368 (43%), Gaps = 60/368 (16%)

Query: 2   PTGFPYGLPPFFTPSTAAGTSGTANNGPIPATNVVSINTTLPQTTAAVTEPLVHAIPQSV 61
           P   P    P F P+  A T+ T+N   +P +N       L        E L   IP S 
Sbjct: 598 PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 653

Query: 62  NINTHHGNIP--VIKTME-ERMEELAKELR---HEIKANQG--NADSFKTQDLCLVPKVD 113
              TH  + P  + KT++ E  EE+AK+++     I+  QG          DLC+ P V 
Sbjct: 654 P-QTHQYSSPFKIEKTVKNEEHEEMAKKMKSLEQSIRDMQGLGGHKGISFSDLCMFPHVH 712

Query: 114 VPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLS 173
           +P                               +  + L++  F +SL+  A+EW+    
Sbjct: 713 LPT----------------------------GAEGKEELLMAYFGESLVGIASEWFIDQD 744

Query: 174 KNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPAL 233
             + HT+D LA  F   + +N  + P+R  L ++ +K  E+FREYA RWR  AAR+  ++
Sbjct: 745 IANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKLSM 804

Query: 234 DEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNAS 293
            E EM   FL+  + DY   ++ A    F E++ +G  +E  ++ G IV + A  +   +
Sbjct: 805 KESEMIDVFLQAQEPDYFHYLLSAVGKTFVEVIKVGEMVENGIKSGKIVSQAALKATTQA 864

Query: 294 KRYGNGH--HKKKETEVGMVSAGA-------GQSMAT----------VAPINAAQMPPSY 334
            + G+G+   KK+  +V  V  GA       G+S A+          ++PI      P  
Sbjct: 865 LQNGSGNIGGKKRREDVATVGNGAKDEFTPIGESYASLFQKLRTLNVLSPIERKMSNPPP 924

Query: 335 PYAPYSQH 342
               YSQH
Sbjct: 925 RNLDYSQH 932


>UniRef100_Q6L419 Putative gag polyprotein [Solanum demissum]
          Length = 421

 Score =  152 bits (383), Expect = 6e-35
 Identities = 108/365 (29%), Positives = 175/365 (47%), Gaps = 34/365 (9%)

Query: 2   PTGFPYGLPPFFTPSTAAGTSGTANNGPIPATNVVSINTTLPQTTAAVTEPLVHAIPQSV 61
           P   P    P F P+  A T+ T+N   +P +N       L        E L   IP S 
Sbjct: 78  PLNTPMMSNPLFVPT--APTNSTSNPTVVPKSNNDPSFQVLHDHGYTPEEAL--KIPSSY 133

Query: 62  NINTHHGNIP--VIKTME----ERMEELAKELRHEIKANQG--NADSFKTQDLCLVPKVD 113
              TH  + P  + KT++    E M +  K L H I+  QG          DLC+ P V 
Sbjct: 134 P-QTHQYSSPFKIEKTVKNEEHEEMTKKMKSLEHSIRDMQGLGGHKGISFSDLCMFPHVH 192

Query: 114 VPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTSLS 173
           +P  FK P+F++Y+G   P  H+ +Y  ++   +  + L++  F +SL+  A++W+    
Sbjct: 193 LPTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGAEGKEELLMAYFGESLVGIASKWFIDQD 252

Query: 174 KNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPAL 233
             + HT+D+LA  F   + +N  + P+R  L ++ +K  E+FREYA RWR  AAR+ P +
Sbjct: 253 IANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAARVKPPM 312

Query: 234 DEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAESSVNAS 293
            E EM   FL+  + DY   ++ A    F+E++ +G  +E  ++ G IV + A  +   +
Sbjct: 313 KELEMIDVFLQAQEPDYFHYLLSAVGKTFTEVIKVGEMVENGIKSGKIVSQAALKATTQA 372

Query: 294 KRYGNGH---HKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYH 350
              G+G+    K++E    +VSA                 P +Y    ++QH +FPP   
Sbjct: 373 LPNGSGNIGGKKRREDVATVVSA-----------------PRTYAQDNHTQH-YFPPQIP 414

Query: 351 QYPLP 355
           QY +P
Sbjct: 415 QYLVP 419


>UniRef100_Q7XU13 OSJNBa0091D06.8 protein [Oryza sativa]
          Length = 2657

 Score =  112 bits (280), Expect = 6e-23
 Identities = 79/264 (29%), Positives = 127/264 (47%), Gaps = 11/264 (4%)

Query: 643  TVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISIL 702
            T+P   K  P+ V    ++ S PG + E     +    I   DY ++  L + P+ +S+ 
Sbjct: 1348 TLPDPHKAKPSKVDKPIKEASPPGEAPETKARSKEKPDI---DYNVLAHLKRIPALLSVY 1404

Query: 703  SLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNL 762
              L+     R+ L+K L+   V       H   +  N    + + F++++    G  HN 
Sbjct: 1405 DALILVPDLREALIKALQTPEVYEVDMAKH--RLFNNPLFVNEITFADEDNIIEGSDHNR 1462

Query: 763  ALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFDGTRKSVL 822
             L+I  N     L  +L+D GS++N++P  +L +  +    L  +  ++  FD   KS L
Sbjct: 1463 PLYIEGNIGPAHLRRILIDPGSAVNILPVRSLTRAGFTTKDLEPTDMVICGFDNQGKSTL 1522

Query: 823  GEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSGKLVT 882
            G I + I +   +F + F V++ N SYS LLGRPWIH    V STLHQ LKF   GK   
Sbjct: 1523 GAITVKIQMSTFSFKVHFFVIEANTSYSALLGRPWIHKYRVVPSTLHQCLKFL-DGK--- 1578

Query: 883  IHGEEAYLVSQLSSFSCIEAGSAE 906
              G +  +V   SS++  E+  A+
Sbjct: 1579 --GAQQRIVGNSSSYTIQESYHAD 1600



 Score = 47.8 bits (112), Expect = 0.002
 Identities = 72/415 (17%), Positives = 154/415 (36%), Gaps = 89/415 (21%)

Query: 112  VDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEWYTS 171
            V  P ++  P F +++     + H+  +    G+  +N SL++  F  SL   A  WY+ 
Sbjct: 842  VAFPARWHPPKFRQFDRTGDAREHLAYFEAACGDTANNSSLLLRQFSGSLTGPAFHWYSR 901

Query: 172  LSKNDIHTFDELAAAFKSHYGFNTRLKPNREF----LRSLSQKKEESFREYAQRWRGAAA 227
            L    I ++  +    K H+     +   ++F    L  + Q+++E+  +Y  R+R +  
Sbjct: 902  LPTGSIRSWASMKEVLKKHF-----VAMKKDFSIVELSQVRQRRDEAIDDYVIRFRNSFV 956

Query: 228  RITPALDEEEMTQTFLKTLKKDYVERMIIAAPNNFSEMVTMGTRLEEAVREGIIVFEKAE 287
            R+   +  E+  +  L +                        T+LE      I+   K  
Sbjct: 957  RLAREMHLEDAIEIALSS--------------------AVAATKLEFENSPQIMELYKNA 996

Query: 288  SSVNASKRYGNGHHKKKETEVGMVSAGAGQSMATVAPINAAQMPPSYPYAPYSQHPFFPP 347
            S+ + +K +                +G G      A  N A++  + P            
Sbjct: 997  SAFDPAKHFS-----------ATKPSGGGSKPKAPAEANVARVFSTAP------------ 1033

Query: 348  FYHQYPLPPGQPQVPVNAIAQQMKQQLPVQQQQQHQQARPTFPPI----PMLYAELLPTL 403
                      Q QVP+          L  + +Q   + RP+   +     +   EL+  +
Sbjct: 1034 ----------QGQVPM----------LGAKNEQARGRQRPSIQDLLKKQYIFRRELVKDM 1073

Query: 404  LHRGHCTTRQGKPPPDPLPP----RFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQG 459
             ++      +    P+P  P       + L C +H+  +G+ +E C A K  +++ +++ 
Sbjct: 1074 FNQ--LKEHRALNLPEPWRPDQVTMVDNPLYCPYHR-YVGYAIEDCVAFKEWLQRAVNEK 1130

Query: 460  KLTFENNVPHVLDNPLPNHATVNMIEVCEEALRLDVRNVATPLVPLHIKLCKASL 514
            ++  +       D   P++  VNM+ V   +   +  ++  PL  +  ++ +  L
Sbjct: 1131 RINLD------ADAINPDYRAVNMVSVEPGSREQEGADIWVPLNQVEHQIARMML 1179


>UniRef100_Q9FE41 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0433F09 [Oryza sativa]
          Length = 2876

 Score =  111 bits (278), Expect = 1e-22
 Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 21/287 (7%)

Query: 621  EGTSAALRSGRVRPPIDKTATPTVP-PIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILR 679
            E  + +LR G+  P   K+  P V  P  K +P            PG + E        +
Sbjct: 1252 EEVNISLRGGKTLPDPHKSKVPNVDKPAKKASP------------PGEAPEAPETKTGSK 1299

Query: 680  LIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGN 739
                 DYK++  L + P+ +S+   L+     R+ L+K L+   V       H   +  N
Sbjct: 1300 EKPAVDYKVLAHLKRIPALLSVYDALMMVPDLREALIKALQAPEVYEVDMAKH--RLYDN 1357

Query: 740  ITACSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSY 799
                + + F++++    G  HN  L+I  N  S  L  +L+D GS++N++P  +L +  +
Sbjct: 1358 PLFVNEITFADEDNIIKGGDHNRPLYIEGNIGSAHLRRILIDLGSAVNILPVRSLTRAGF 1417

Query: 800  RGTPLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIH 859
                L     ++  FD   K  LG I + I +   +F + F V++ N SYS LLGRPWIH
Sbjct: 1418 TTKDLEPIDVVICGFDNQGKPTLGAITIKIQMSTFSFKVRFFVIEANTSYSALLGRPWIH 1477

Query: 860  DAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAE 906
                V STLHQ LKF         +G +  + S  S ++  E+  A+
Sbjct: 1478 KYRVVPSTLHQCLKFLDG------NGVQQRITSNFSPYTIQESYHAD 1518


>UniRef100_Q5XWL3 Gag-pol polyprotein-like [Solanum tuberosum]
          Length = 1716

 Score =  105 bits (262), Expect = 7e-21
 Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 22/277 (7%)

Query: 532 CFTVQDDIQSLMNDNFLTVSDVCVIVPVFHDPPVKSMPLKENAEPLVIRLPGLVPYTSDR 591
           C  ++  IQ L+N N +++  V         P V S PL  +    +  +      T + 
Sbjct: 478 CINLKHKIQDLINQNVVSLQTVA--------PNVNSNPLPNHGGITINMIE-----TDED 524

Query: 592 AIPYKYNATIIENGVEVPLVSLAVMNN------TAEGTSAAL-RSGRVRPP--IDKTATP 642
               K    I  + +E  + SL++         T E   A + R   VRP   I+ TAT 
Sbjct: 525 WCVMKAIVLIAPDKLERAVASLSIREKKEFVILTPEKVVALVPRETLVRPKFVIETTATQ 584

Query: 643 TVPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISIL 702
            +    +    +         +   SI  +  +E  R ++  DY IV  L +TP++IS+ 
Sbjct: 585 GMTRSGRCYTPEELAQGGQKKEKKSSINKAKAEEFWRRMQPKDYSIVKYLEKTPAQISVW 644

Query: 703 SLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEAGKHHNL 762
           +LL+SS  HR  L+K L+  YV      D+  +++  +     + F ++ELP  G+ HN 
Sbjct: 645 ALLMSSQLHRQALMKALDDTYVPVGTNSDNLAAMINQVIRGHRISFCDEELPFEGRMHNK 704

Query: 763 ALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSY 799
           ALH++  C+  +++ VLVD GS LN+ P STL  L +
Sbjct: 705 ALHVTTMCRDKIINRVLVDDGSGLNICPLSTLRHLKF 741



 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 82/295 (27%), Positives = 128/295 (42%), Gaps = 73/295 (24%)

Query: 199 PNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTLKKDYVERMIIAA 258
           P+R  L  + QK  ES+RE+A RWR  AAR+ P + E+E+ + F++  K           
Sbjct: 299 PDRYSLEKMKQKSTESYREFAYRWRKEAARVRPPMSEKEIVEVFVRVAK----------- 347

Query: 259 PNNFSEMVTMGTRLEEAVREGIIVFEKA--ESSVNASKRYGNGHHKKKETEVGMVSAGAG 316
              F+E+V +G  +E+ +R G IV+  A  ESS+           KKK  +V  +S   G
Sbjct: 348 ---FAEIVKIGETIEDGLRTGKIVYVAASPESSILL---------KKKRDDVSSISY-EG 394

Query: 317 QSMATVAPINAAQMPPSYPYAPYSQHPFFPPFYHQYPLPPGQPQVPVNAIAQQMKQQLPV 376
           +  A  +     +  PS+  + + + P                                 
Sbjct: 395 KKTAKKSSSCQGRSRPSH--SSFEKKP--------------------------------- 419

Query: 377 QQQQQHQQARPTFPPIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQG 436
                   AR  F P+     +L   L   G+     G  P D     +R D +C +H  
Sbjct: 420 --------AR-NFTPLIKSRTKLFERLTVAGYIHP-VGPKPVDTSSKFYRPDQRCAYHSN 469

Query: 437 ALGHDVEGCYALKYIVKKLIDQGKLTFENNVPHVLDNPLPNHA--TVNMIEVCEE 489
           ++GHD E C  LK+ ++ LI+Q  ++ +   P+V  NPLPNH   T+NMIE  E+
Sbjct: 470 SVGHDTEDCINLKHKIQDLINQNVVSLQTVAPNVNSNPLPNHGGITINMIETDED 524


>UniRef100_Q949K7 Putative gag polyprotein [Cicer arietinum]
          Length = 88

 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 42/88 (47%), Positives = 60/88 (67%)

Query: 106 LCLVPKVDVPKKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDA 165
           +CLVP V +P+KFK+ +F++Y G TCP+NH+  Y RKM ++  ND L+IH FQDSL   +
Sbjct: 1   MCLVPDVTIPRKFKVLEFEKYKGATCPKNHLTMYGRKMASHAHNDKLLIHFFQDSLSGAS 60

Query: 166 TEWYTSLSKNDIHTFDELAAAFKSHYGF 193
             WY  L +N IH++ +LA AF   Y +
Sbjct: 61  LSWYMHLERNRIHSWKDLADAFLRQYKY 88


>UniRef100_Q6L420 Putative polyprotein [Solanum demissum]
          Length = 1483

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 819 KSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFAKSG 878
           +  +GEI+L + IGP  F + FQV++INASY+ LLGRPW+H AGAV STLHQ +KF    
Sbjct: 213 EDAIGEIELILKIGPVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFEYDR 272

Query: 879 KLVTIHGEEAYLVSQLSSFSCIEAGSA-EGTAFQGLTVEGTEPKRDGT-------AMASL 930
           + V +H E    V + SS   I+A +  E   +Q   V   E   +G         MAS+
Sbjct: 273 QEVIVHCERDLSVYKDSSLPFIKANNENEALVYQAFEVVVVEHNLEGNLISKPQLPMASV 332

Query: 931 KDAQRAVQEGQAAGWGRLIQL---------RENKHKEGLGFSP 964
                 ++ G   G G  I L         R++    GLG+ P
Sbjct: 333 MMVNEMLKHGFKLGKGLGIFLQGRAYPVSPRKSLGTFGLGYKP 375



 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 26/171 (15%)

Query: 585 VPYTSDRAIPYKYNATIIE-NGVEVPLVSLAVMNNTAEGTSAALRSGRVRPPIDKTATPT 643
           +P T+ +A+P+KY  T++   G E+        N   +      RS R            
Sbjct: 66  LPMTNPKAVPWKYEPTVVTYKGKEI--------NEKVDEIEGMTRSRRCY---------- 107

Query: 644 VPPIDKTTPTDVSPINRDVSQPGRSIEDSNLDEILRLIKRSDYKIVDQLLQTPSKISILS 703
                   P ++   N D  Q    + +   +E LR +K SDY IV+QL +TP++IS+LS
Sbjct: 108 -------APAELRKNNNDQMQVKSPVTEREAEEFLRKMKLSDYSIVEQLRKTPAQISLLS 160

Query: 704 LLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELP 754
           LL+ S  HR  ++K+L +A+V +E T+     I G I   + + FS+DELP
Sbjct: 161 LLIHSDEHRKVVMKILNEAHVPNEGTMSQLEKIAGRIFEVNCITFSDDELP 211


>UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1580

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 7/203 (3%)

Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
           E PE  ++ +L  L+I+       +S ++VD G+++N+MP +T  +L      L ++  +
Sbjct: 351 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 410

Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
           +K F G     +G +++ +T+G +T   TF V+D   SYS LLGR WIH    + ST+HQ
Sbjct: 411 LKDFGGNPSETMGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQ 470

Query: 871 KLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAEGTAFQGLTVEGTEPKRDGTAMASL 930
            L     G  + I   ++ L  +  S+ C E        +   TV+  + K+ G  + S 
Sbjct: 471 CL-IQWQGDKIEIVPADSQLKMENPSY-CFEGVMEGSNVYTKDTVDDLDDKQ-GQGLMSA 527

Query: 931 KDAQRAVQEGQAAGWGR--LIQL 951
            D +  +    A G GR  LI+L
Sbjct: 528 DDLEE-IDISPAIGQGRHLLIEL 549


>UniRef100_Q9ZQ67 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 47/142 (33%), Positives = 72/142 (50%)

Query: 746 LWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLR 805
           L F+ ++L      HN  L I ++     ++ +L+DTGSS+NV+ K  L ++      ++
Sbjct: 330 LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIK 389

Query: 806 RSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVT 865
            S   +  FDG      G I LPI +G       F V+D    Y+ +LG PWIHD  A+ 
Sbjct: 390 PSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIP 449

Query: 866 STLHQKLKFAKSGKLVTIHGEE 887
           S+ HQ +K   S  + TI G +
Sbjct: 450 SSYHQCIKIPTSIGIETIRGNQ 471


>UniRef100_Q6ASW9 Reverse transcriptase (RNA-dependent DNA polymerase) domain
           containing protein [Oryza sativa]
          Length = 1372

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 47/147 (31%), Positives = 79/147 (52%), Gaps = 1/147 (0%)

Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
           E PE  ++ +L  L+I+       +S ++VD G+++N+MP +T  +L      L ++  +
Sbjct: 424 EKPEGTENRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNVEDLIKTNMV 483

Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
           +K F G      G +++ +T+G +T   TF V+D   SYS LLGR WIH    + ST+HQ
Sbjct: 484 LKDFGGNPSETKGVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 543

Query: 871 KLKFAKSGKLVTIHGEEAYLVSQLSSF 897
            L   +  K+  +  + A L+  L  F
Sbjct: 544 CLIQWQGDKIQIVPADRAKLIELLKEF 570


>UniRef100_Q6AVG0 Putative retrotransposon gag protein [Oryza sativa]
          Length = 1251

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 749 SEDELPEA-GKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRS 807
           +E E PE  G  H   L+I+       +S ++VD G+++N+MP +T  +L      L ++
Sbjct: 685 AEFEKPEGTGNRHLKPLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKT 744

Query: 808 TFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTST 867
             ++K F G      G +++ +T+G +T   TF V+D   SYS LLGR WIH    + ST
Sbjct: 745 NMVLKDFGGNPSETRGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPST 804

Query: 868 LHQKL 872
           +HQ L
Sbjct: 805 MHQCL 809



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 32/115 (27%), Positives = 61/115 (52%), Gaps = 3/115 (2%)

Query: 111 KVDVPKKFKIPDFDRYNGL--TCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDATEW 168
           +V +P +FK+PDF +++G        HI +++ + G     D+L    F+ SL   A  W
Sbjct: 235 RVPLPNRFKVPDFSKFSGQEGVSTYEHINRFLAQCGEASAVDALRFRLFRLSLSGSAFTW 294

Query: 169 YTSLSKNDIHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 223
           ++SL    I+++ +L   F S++ ++   +     L ++ Q+ +E   EY QR+R
Sbjct: 295 FSSLPCGSINSWADLEKQFHSYF-YSWVHEMKLSDLTAIKQRHDEPVHEYIQRFR 348


>UniRef100_Q7X6I4 OSJNBa0039G19.2 protein [Oryza sativa]
          Length = 1136

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 1/142 (0%)

Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
           E PE  K+ +L  L+I+       +S ++VD G+++N+MP +T  +L      L +++ +
Sbjct: 364 EKPEGTKNRHLKPLYINGYVNEKPMSKMMVDGGAAVNLMPYATFRKLGRNTEDLIKTSMV 423

Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
           +K F G      G ++L +T+G +T   TF V+D   SYS LLGR WIH    + ST+HQ
Sbjct: 424 LKDFGGNPSETKGVLNLELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 483

Query: 871 KLKFAKSGKLVTIHGEEAYLVS 892
            L   +  K+  +  +++  V+
Sbjct: 484 CLIQWQGNKIEIVLADKSVNVA 505


>UniRef100_O82612 T5H22.5 protein [Arabidopsis thaliana]
          Length = 637

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 14/144 (9%)

Query: 743 CSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGT 802
           CS++ F E+E     + H+ AL I+++  +  +S +LVDTGSS++++         + G 
Sbjct: 182 CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLI---------FLGP 232

Query: 803 PLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAG 862
           P       + AF       LG I LP+  G  + ++ F V D  A+Y+ +LG PWI    
Sbjct: 233 PSP-----LVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287

Query: 863 AVTSTLHQKLKFAKSGKLVTIHGE 886
           AV ST HQ LKF  S  + TI G+
Sbjct: 288 AVPSTYHQWLKFPTSNGVETIWGD 311


>UniRef100_Q9SYC1 F11M15.5 protein [Arabidopsis thaliana]
          Length = 1295

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 743 CSNLWFSEDELPEAGKHHNLALHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGT 802
           C  + FSE+E  +  K H+ AL IS++  +  +  VL+DTGSS++++   TL ++     
Sbjct: 445 CPEISFSEEETSDLDKPHDDALVISLDVGNCEVQRVLIDTGSSVDLIFLDTLVRMGISKK 504

Query: 803 PLRRSTFLVKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAG 862
            ++ +   + +F      +L  I LP+T      +I F V D  A+Y+ +LG PW+++  
Sbjct: 505 DIKGALSPLVSFTSETSMLLRTITLPVTAQGIVKMIEFTVFDRPAAYNIILGTPWLYEMK 564

Query: 863 AVTSTLHQKLKFAKSGKLVTIHGEE--AYLVSQLSSFS 898
           AV ST HQ +KF     +  I G +  + +V +++  S
Sbjct: 565 AVPSTYHQCVKFPTPTGVKQILGSQRTSRIVGEMTGIS 602



 Score = 38.9 bits (89), Expect = 0.80
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 116 KKFKIPDFDRYNGLTCPQNHIIKYVRKMGNYK----DNDSLMIHCFQDSLMEDATEWYTS 171
           + FK+P    YNG   P+ ++  +    G       + D+ +   F +SL   A  W+T 
Sbjct: 157 RDFKLPG---YNGKGDPKEYLTFFQVIAGRVPLEPHEEDAGLCKLFSESLSGPALTWFTQ 213

Query: 172 LSKNDIHTFDELAAAFKSHYGF 193
           L +  I  F +L+ AF   YG+
Sbjct: 214 LEEGSIDNFKQLSTAFIKQYGY 235


>UniRef100_Q7XFQ0 Putative retroelement [Oryza sativa]
          Length = 1025

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
           E PE  ++ +L  L+I+       LS ++VD G+++N+MP +T  +L      L ++  +
Sbjct: 108 EKPEGTENRHLKPLYINGYVNGKPLSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMV 167

Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
           +K F G      G +++ +T+G +T   TF V+D   SYS LLGR WIH    + ST+HQ
Sbjct: 168 LKDFGGNPSETKGVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQ 227

Query: 871 KL 872
            L
Sbjct: 228 CL 229


>UniRef100_Q9AYA0 Putative polyprotein [Oryza sativa]
          Length = 340

 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 752 ELPEAGKHHNLA-LHISVNCKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFL 810
           E PE  +H +L  L+I+       +S ++VD G+++N+MP +T  +L      L ++  +
Sbjct: 99  EKPEGTEHRHLKPLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRNAEDLIKTNLV 158

Query: 811 VKAFDGTRKSVLGEIDLPITIGPETFLITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQ 870
           +K F G      G +++ +T+G +T   T  V+D   SYS LLGR WIH    + ST+HQ
Sbjct: 159 LKDFGGNPSETKGVLNVELTVGNKTIPTTLFVIDGKGSYSLLLGRDWIHTNCCIPSTMHQ 218

Query: 871 KL 872
            L
Sbjct: 219 CL 220


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,756,682,932
Number of Sequences: 2790947
Number of extensions: 78225593
Number of successful extensions: 304491
Number of sequences better than 10.0: 1282
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 1121
Number of HSP's that attempted gapping in prelim test: 296772
Number of HSP's gapped (non-prelim): 4805
length of query: 1018
length of database: 848,049,833
effective HSP length: 138
effective length of query: 880
effective length of database: 462,899,147
effective search space: 407351249360
effective search space used: 407351249360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)