BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146758.11 + phase: 0 /pseudo
         (1309 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q5XWK9 Gag-pol polyprotein-like [Solanum tuberosum]         408  e-112
UniRef100_Q710T7 Gag-pol polyprotein [Populus deltoides]              171  1e-40
UniRef100_Q8W153 Polyprotein [Oryza sativa]                           109  5e-22
UniRef100_Q5ZEI5 Hypothetical protein P0009G03.10 [Oryza sativa]      107  2e-21
UniRef100_Q9C692 Polyprotein, putative [Arabidopsis thaliana]         106  4e-21
UniRef100_Q7X6S0 OSJNBb0011N17.2 protein [Oryza sativa]               105  9e-21
UniRef100_Q7Y165 Putative retrotransposon protein [Oryza sativa]      104  2e-20
UniRef100_O23741 SLG-Sc and SLA-Sc genes and Melmoth retrotransp...   101  1e-19
UniRef100_Q9FWZ5 Putative retroelement polyprotein [Arabidopsis ...   100  4e-19
UniRef100_Q9FIC5 Retroelement pol polyprotein-like [Arabidopsis ...    99  9e-19
UniRef100_Q5XWR5 Putative retroelement pol polyprotein-like [Sol...    96  6e-18
UniRef100_Q9LGZ8 Retroelement pol polyprotein-like [Arabidopsis ...    96  6e-18
UniRef100_Q6ZI27 Hypothetical protein OJ1004_H01.32 [Oryza sativa]     92  1e-16
UniRef100_O82331 Putative retroelement pol polyprotein [Arabidop...    91  2e-16
UniRef100_Q851Y3 Putative polyprotein [Oryza sativa]                   89  7e-16
UniRef100_Q9SLL4 Putative retroelement pol polyprotein [Arabidop...    89  1e-15
UniRef100_Q94IU9 Copia-like polyprotein [Arabidopsis thaliana]         87  3e-15
UniRef100_Q6I5B6 Putative polyprotein [Oryza sativa]                   86  6e-15
UniRef100_Q9MAJ8 F27F5.19 [Arabidopsis thaliana]                       86  8e-15
UniRef100_Q9FKA8 Retroelement pol polyprotein-like [Arabidopsis ...    86  8e-15

>UniRef100_Q5XWK9 Gag-pol polyprotein-like [Solanum tuberosum]
          Length = 1212

 Score =  408 bits (1048), Expect = e-112
 Identities = 197/388 (50%), Positives = 276/388 (70%), Gaps = 6/388 (1%)

Query: 10  DNMCVRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALEEWETKDAQIITWIL 69
           ++  VRF+GKNYS+WEFQF+++V G+ LW +++G   APT+   L EW+ KDA+++TWIL
Sbjct: 7   ESFSVRFTGKNYSSWEFQFQLFVTGKELWGYIDGSDPAPTDATKLGEWKIKDARVMTWIL 66

Query: 70  STINPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGF 129
            +I+P ++ NLR +   + MW+YL+++YNQDN A+RFQLE EIANY QG   VQ+Y+SGF
Sbjct: 67  GSIDPLIVLNLRPYKTVKAMWDYLQKVYNQDNSARRFQLEYEIANYSQGGLFVQDYFSGF 126

Query: 130 LNLWTEHSAIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLD 189
            NLW E + I++A +P   L+ +Q V+  SK+DQFLM LR +FE +R +L+NR+  PSLD
Sbjct: 127 QNLWAEFTDIVYAKIPTESLSVIQAVHEQSKRDQFLMKLRSDFESIRSNLMNRDPSPSLD 186

Query: 190 TCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIAR 249
            C  ELLREEQRL+TQ    ++       TVA+AAQ +GKG DM + QC+SCK++GHIA 
Sbjct: 187 VCFRELLREEQRLVTQNVFKKE----NDVTVAFAAQGKGKGRDMSRTQCYSCKEYGHIAS 242

Query: 250 SCSKKFCNYCKQRGHIITECYVRPPPSTQSPM*A-LHAYSTTNATNGGVSQSEMIQQMVI 308
           +CSKKF NYCKQ+GHII EC +RP     +   A ++  +  N++ G V   EM+QQM++
Sbjct: 243 NCSKKFYNYCKQQGHIIKECPMRPQNRRINAFQARINGSTDDNSSLGQVLTPEMVQQMIV 302

Query: 309 SALPSIGIQGKSSNASHPWFLDSGASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITD 368
           SA  ++G+QG +   S+ W +DSGAS HMT S   L N+  Y G  +IQIA+G+ L IT 
Sbjct: 303 SAFSALGLQG-NDVTSNFWIVDSGASNHMTNSTSILKNVRKYQGPSQIQIANGSNLPITK 361

Query: 369 VGDINSDFRDVLVSPGLASNLLSVGQLV 396
           VGDI   F++V VSP L+++L+SVGQLV
Sbjct: 362 VGDITPTFKNVFVSPKLSTSLISVGQLV 389



 Score = 50.8 bits (120), Expect = 3e-04
 Identities = 26/62 (41%), Positives = 37/62 (58%), Gaps = 1/62 (1%)

Query: 547 FFDPSLKCFLYLRNF*HMLKLNFKQVLKFF-TDSGGEYMSHEFQEYLQHKGILSQ*SCPN 605
           F     + F   + F   ++  F   +K   +DSGGEYMS+EF+++L  KGI+SQ SCP 
Sbjct: 542 FLRSKSEVFSMFKTFLAYIETQFSTCIKLLRSDSGGEYMSYEFKKFLLDKGIVSQHSCPY 601

Query: 606 TP 607
           TP
Sbjct: 602 TP 603


>UniRef100_Q710T7 Gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  171 bits (433), Expect = 1e-40
 Identities = 120/410 (29%), Positives = 199/410 (48%), Gaps = 29/410 (7%)

Query: 9   IDNMCVRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPT-----EKAALEEWETKDAQ 63
           + ++ VR  GKNYS W +  R ++KG+++W +++G    P      +  +++ WE  +A+
Sbjct: 9   LQSVSVRLDGKNYSYWSYVMRNFLKGKKMWGYVSGTYVVPKNTEEGDTVSIDTWEANNAK 68

Query: 64  IITWILSTINPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQ 123
           IITWI + +   +   L  +  A+E+W++L+R++ Q N AK++QLE +I    Q N S+Q
Sbjct: 69  IITWINNYVEHSIGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRALHQKNMSIQ 128

Query: 124 EYYSGFLNLWTEHSAIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRN 183
           E+YS   +LW +    +   V      A  E     +  QFL  LR +FE +RGS+L+R+
Sbjct: 129 EFYSAMTDLWDQ--LALTESVELKACGAYIERREQQRLVQFLTALRSDFEGLRGSILHRS 186

Query: 184 VVPSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQV------Q 237
            +PS+D+ VSELL EE RL  Q    +  L   + +V     +    H  +        +
Sbjct: 187 PLPSVDSVVSELLAEEIRL--QSYSEKGILSASNPSVLAVPSKPFSNHQNKPYTRVGFDE 244

Query: 238 CFSCKQFGHIARSCSK--------KFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAYST 289
           C  CKQ GH    C K        K  +  +   H   + Y +PP    + + +  + + 
Sbjct: 245 CSFCKQKGHWKAQCPKLRQQNQAWKSGSQSQSNAHRSPQGY-KPPHHNTAAVASPGSITD 303

Query: 290 TNATNGGVSQSEMIQQMVISALPSIGIQGKSSNASH-PWFLDSGASYHMTGSLEYLHNLH 348
            N       +   +Q   +SA     +   SS  SH  W LDSGAS+HM+       ++ 
Sbjct: 304 PNTLAEQFQKFLSLQPQAMSASSIGQLPHSSSGISHSEWVLDSGASHHMSPDSSSFTSV- 362

Query: 349 SYDGNKKIQIADGNTLSITDVGDI---NSDFRDVLVSPGLASNLLSVGQL 395
           S   +  +  ADG  + +  VG +   +    +V + P L  NL S+GQ+
Sbjct: 363 SPLSSIPVMTADGTPMPLAGVGSVVTLHLSLPNVYLIPKLKLNLASIGQI 412


>UniRef100_Q8W153 Polyprotein [Oryza sativa]
          Length = 1472

 Score =  109 bits (273), Expect = 5e-22
 Identities = 100/401 (24%), Positives = 182/401 (44%), Gaps = 37/401 (9%)

Query: 19  KNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALE--EWETKDAQIITWILSTINPQM 76
           KNY +W  +  + +K + L  ++ G  K P   +++E   W T ++ ++ W+L+++ P +
Sbjct: 55  KNYLSWSRRALLILKTKGLEGYVTGEVKEPENTSSVEWKTWSTTNSLVVAWLLTSLIPAI 114

Query: 77  INNLRSFSFAQEMWNYLKRIYN-QDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTE 135
              + + S A EMW  L ++Y+ + N     + + +I+  +QG  SV EY +   +LW++
Sbjct: 115 ATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVAEYVAELKSLWSD 174

Query: 136 HS-----AIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDT 190
                   + H+D     +A +++     +  +FL  L PEFE  R ++ ++  +P+LD 
Sbjct: 175 LDHYDPLGLEHSDC----IAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFHQTTLPTLDE 230

Query: 191 CVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARS 250
            ++ + +EE   L +  +   A    S T A     +GK    +  +CF+C + GH+ R 
Sbjct: 231 AIAAMAQEE---LKKKVLPSAAPCSPSPTYAIV---QGK----ETRECFNCGEMGHLMRD 280

Query: 251 C-SKKFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAY-------STTNATNGGVSQSEM 302
           C + +   Y + RG            + +S     + Y       + T       +  + 
Sbjct: 281 CHAPRKPTYGRGRGVDRGGTRGGRGYAGRSNRGRGYGYRGDYKANAVTLEEGSSGTTPDN 340

Query: 303 IQQMVISALPSIGIQGKSSNASH-PWFLDSGASYHMTG-SLEYL-HNLHSYDGNKKIQIA 359
           +     S   S      S N SH  W LDSGAS H+TG S E+  +  +S+   + IQ A
Sbjct: 341 VANFAHSTSGSFNQAFMSMNTSHSSWILDSGASRHVTGMSGEFTSYKPYSFAHKETIQTA 400

Query: 360 DGNTLSITDVGDI----NSDFRDVLVSPGLASNLLSVGQLV 396
           DG +  +   G +    +     VL       NL+S+  LV
Sbjct: 401 DGTSCQVKGEGIVQCTPSITLSSVLYVHSFPVNLISISSLV 441



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 549 DPSLKCFLYLRNF*HMLKLNFKQVLKFF-TDSGGEYMSHEFQEYLQHKGILSQ*SCPNTP 607
           D  LKCF   +NF   +K +F   ++F  TD+GGEYM+ EF  +L  +GIL Q SCP+TP
Sbjct: 599 DEVLKCF---QNFYAYIKNHFNARVQFIRTDNGGEYMNSEFGHFLSLEGILHQTSCPDTP 655

Query: 608 P 608
           P
Sbjct: 656 P 656


>UniRef100_Q5ZEI5 Hypothetical protein P0009G03.10 [Oryza sativa]
          Length = 337

 Score =  107 bits (268), Expect = 2e-21
 Identities = 72/263 (27%), Positives = 127/263 (47%), Gaps = 14/263 (5%)

Query: 14  VRFSGKNYSAWEFQFRMYVKGERLWSHL-NGVSKAPTEKAALEEWETKDAQIITWILSTI 72
           ++ +G+NY  WE   RM ++     SHL +      T+   ++ W+T D +++ +I  ++
Sbjct: 18  IKLNGQNYQEWELSARMLLRSIGQASHLTDDPPDEKTDATKIKAWKTADDRVMGFIFMSV 77

Query: 73  NPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNL 132
              +  + R  S A+EMW+YLK+ Y Q++ A RF L   + N +Q + S++E+Y+ F  L
Sbjct: 78  EVPIRMSFRDHSTAKEMWDYLKQRYTQESGALRFSLLQNLHNLQQQDQSIEEFYNAFTRL 137

Query: 133 WTEHSAIIHADVPNIYLAAVQEVYNTSK-QDQFLMILRPEFEVVRGSLLNRNVVPSLDTC 191
             +  A              +E ++      QF+M L  +FE +R  LL R   P++   
Sbjct: 138 SGQLEAQTPKGASGCAQCKAREKHDQENLVYQFVMRLSSQFESIRVQLLGRPTRPTMAEA 197

Query: 192 VSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSC 251
           +++L+ EE RL +        +   +  V  A QR G              +F  IA+  
Sbjct: 198 LADLIAEETRLCSLDTTPTPVV---THNVMAAPQRVG-------APMGGIPEFSSIAK-- 245

Query: 252 SKKFCNYCKQRGHIITECYVRPP 274
           S + C++CK+ GHI  +C+   P
Sbjct: 246 SDRICSHCKKVGHISDDCFYLHP 268


>UniRef100_Q9C692 Polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  106 bits (265), Expect = 4e-21
 Identities = 99/446 (22%), Positives = 192/446 (42%), Gaps = 86/446 (19%)

Query: 20  NYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAA-LEEWETKDAQIITWILSTINPQMIN 78
           NY  W   F+  ++  + +  L+G    P + +  LE+W T +A +++W+  TI+ +++ 
Sbjct: 42  NYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDWLTINALLVSWMKMTIDSELLT 101

Query: 79  NLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTEHSA 138
           N+     A+++W  +++ ++  N  K  +++ ++A  KQ   +V+ YY     +W   ++
Sbjct: 102 NISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQEGMTVEGYYGKLNKIWDNINS 161

Query: 139 -----IIHADVPNIYLAAVQEVYNTSKQ-DQFLMIL-RPEFEVVRGSLLNRNVVPSLDTC 191
                I         L   QE Y       Q+L  L   +F  +R SL +R  +P L+  
Sbjct: 162 YRPLRICKCGRCICNLGTDQEKYREDDMVHQYLYGLNETKFHTIRSSLTSRVPLPGLEE- 220

Query: 192 VSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSC 251
           V  ++R+E+ ++   + + +     +   A+A Q R +   + +       +F +  +  
Sbjct: 221 VYNIVRQEEDMVNNRSSNEE----RTDVTAFAVQMRPRSEVISE-------KFANSEKLQ 269

Query: 252 SKKFCNYCKQRGHIITECYV---RPPPSTQSPM*ALHAYSTTN--------ATNGGVSQS 300
           +KK C +C + GH    C+V    P      P    ++  +T+          NGG  + 
Sbjct: 270 NKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRGKSNSNGSTSRGRGRFGPGFNGGQPRP 329

Query: 301 EMIQQMVISALPSI------------------------GI-----QGKSSNASH------ 325
             +  ++    PS                         G+      G+S N S+      
Sbjct: 330 TYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTDEQWRGVVKLLNAGRSDNKSNAHETQS 389

Query: 326 -------PWFLDSGASYHMTGSLEYLHNLHSY--------DGNKKIQIADGNTLSITDVG 370
                   W LD+GAS+HMTG+LE L ++ S         DGNK++ +++G T+ +    
Sbjct: 390 GTCSLFTSWILDTGASHHMTGNLELLSDMRSMSPVLIILADGNKRVAVSEG-TVRLGS-- 446

Query: 371 DINSDFRDVLVSPGLASNLLSVGQLV 396
             +   + V     L S+L+SVGQ++
Sbjct: 447 --HLILKSVFYVKELESDLISVGQMM 470


>UniRef100_Q7X6S0 OSJNBb0011N17.2 protein [Oryza sativa]
          Length = 1262

 Score =  105 bits (262), Expect = 9e-21
 Identities = 92/369 (24%), Positives = 171/369 (45%), Gaps = 33/369 (8%)

Query: 14  VRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALE--EWETKDAQIITWILST 71
           ++   KNY +W  +  + +K + L  ++ G  K P   +++E   W T ++ ++ W+L++
Sbjct: 49  IKLGVKNYLSWSRRALLILKTKGLEGYVTGEVKEPENTSSVEWKTWSTTNSLVVAWLLTS 108

Query: 72  INPQMINNLRSFSFAQEMWNYLKRIYN-QDNPAKRFQLELEIANYKQGNSSVQEYYSGFL 130
           + P +   + + S A EMW  L ++Y+ + N     + + +I+  +QG  SV EY +   
Sbjct: 109 LIPAIATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVAEYVAELK 168

Query: 131 NLWTEHS-----AIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVV 185
           +LW++        + H+D     +A +++     +  +FL  L PEFE  R ++ ++  +
Sbjct: 169 SLWSDLDHYDPLGLEHSDC----IAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFHQTTL 224

Query: 186 PSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFG 245
           P+LD  ++ + +EE   L +  +   A    S T A     +GK    +  +CF+C + G
Sbjct: 225 PTLDEAIAAMAQEE---LKKKVLPSAAPCSPSPTYAIV---QGK----ETRECFNCGEMG 274

Query: 246 HIARSC-SKKFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAY-------STTNATNGGV 297
           H+ R C + +   Y + RG            + +S     + Y       + T       
Sbjct: 275 HLMRDCHAPRKPTYGRGRGVDRGGTRGGRGYAGRSNRGRGYGYRGDYKANAVTLEEGSSG 334

Query: 298 SQSEMIQQMVISALPSIGIQGKSSNASH-PWFLDSGASYHMTG-SLEYL-HNLHSYDGNK 354
           +  + +     S   S      S N SH  W LDSGAS H+TG S E+  +  +S+   +
Sbjct: 335 TTPDNVANFAHSTSGSFNQAFMSMNTSHSSWILDSGASRHVTGMSGEFTSYKPYSFAHKE 394

Query: 355 KIQIADGNT 363
            IQ ADG +
Sbjct: 395 TIQTADGTS 403


>UniRef100_Q7Y165 Putative retrotransposon protein [Oryza sativa]
          Length = 1176

 Score =  104 bits (260), Expect = 2e-20
 Identities = 92/364 (25%), Positives = 169/364 (46%), Gaps = 33/364 (9%)

Query: 19  KNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALE--EWETKDAQIITWILSTINPQM 76
           KNY +W  +  + +K + L  ++ G  K P   +++E   W T ++ ++ W+L+++ P +
Sbjct: 55  KNYLSWSRRALLILKTKGLEGYVTGEVKEPENTSSVEWKTWSTTNSLVVAWLLTSLIPAI 114

Query: 77  INNLRSFSFAQEMWNYLKRIYN-QDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTE 135
              + + S A EMW  L ++Y+ + N     + + +I+  +QG  SV EY +   +LW++
Sbjct: 115 ATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVAEYVAELKSLWSD 174

Query: 136 HS-----AIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDT 190
                   + H+D     +A +++     +  +FL  L PEFE  R ++ ++  +P+LD 
Sbjct: 175 LDHYDPLGLEHSDC----IAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFHQTTLPTLDE 230

Query: 191 CVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARS 250
            ++ + +EE   L +  +   A    S T A     +GK    +  +CF+C + GH+ R 
Sbjct: 231 AIAAMAQEE---LKKKVLPSAAPCSPSPTYAIV---QGK----ETRECFNCGEMGHLMRD 280

Query: 251 C-SKKFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAY-------STTNATNGGVSQSEM 302
           C + +   Y + RG            + +S     + Y       + T       +  + 
Sbjct: 281 CHAPRKPTYGRGRGVDRGGTRGGRGYAGRSNRGRGYGYRGDYKANAVTLEEGSSGTTPDN 340

Query: 303 IQQMVISALPSIGIQGKSSNASH-PWFLDSGASYHMTG-SLEYL-HNLHSYDGNKKIQIA 359
           +     S   S      S N SH  W LDSGAS H+TG S E+  +  +S+   + IQ A
Sbjct: 341 VANFAHSTSGSFNQAFMSMNTSHSSWILDSGASRHVTGMSGEFTSYKPYSFAHKETIQTA 400

Query: 360 DGNT 363
           DG +
Sbjct: 401 DGTS 404



 Score = 48.5 bits (114), Expect = 0.001
 Identities = 23/40 (57%), Positives = 30/40 (74%), Gaps = 1/40 (2%)

Query: 570 KQVLKFF-TDSGGEYMSHEFQEYLQHKGILSQ*SCPNTPP 608
           K+V +F  TD+GGEYM+ EF  +L  +GIL Q SCP+TPP
Sbjct: 444 KEVTEFIRTDNGGEYMNSEFGHFLSLEGILHQTSCPDTPP 483


>UniRef100_O23741 SLG-Sc and SLA-Sc genes and Melmoth retrotransposon sequence
           [Brassica oleracea]
          Length = 1131

 Score =  101 bits (252), Expect = 1e-19
 Identities = 97/438 (22%), Positives = 177/438 (40%), Gaps = 61/438 (13%)

Query: 14  VRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAP-TEKAALEEWETKDAQIITWILSTI 72
           ++  G NY  W    ++ +  +     ++G    P T       W   ++ + +W+L+++
Sbjct: 30  LKLDGSNYDDWNAAMKIALDAKNKIGFVDGTLTRPDTSDPTFRLWSRCNSMVKSWLLNSV 89

Query: 73  NPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNL 132
           +PQ+  ++   + A ++W  L   ++  N  + F L  EI + KQG+ S+ +YY+    L
Sbjct: 90  SPQIYRSILRLNDAADIWRDLHGRFHMTNLPRTFNLTQEIQDLKQGSMSLSDYYTTLKTL 149

Query: 133 WTEHSAIIHADVPNIYLAA--VQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDT 190
           W    ++   D P +   A  +Q+  + +K  +FL  L   + ++R  ++ + V+PSL  
Sbjct: 150 WDNLESVDEPDTPCVCGNAEKLQKKVDRAKIVKFLAGLNDSYAIIRRQIIMKKVLPSLVE 209

Query: 191 CVSELLREEQR-----LLTQGAMSRDALI---FESTTVAYAAQRRGKGHDMQQVQCFSCK 242
             + L +++ +      +T  A +    +        + Y      KG  +    C  C 
Sbjct: 210 VYNILDQDDSQKGFSTAITPAAFNVSENVPPPMAEAGICYVQTGPNKGRPI----CSFCN 265

Query: 243 QFGHIARSCSKK------FCNYCKQRG---------HIITECYVRPPPSTQSPM------ 281
           + GHIA  C KK      F +  K +           +  +    PP S QSPM      
Sbjct: 266 RVGHIAERCYKKHGFPPGFVSKYKSQSSGDRLQKPKQVAAQVSFSPPNSGQSPMTMDHLV 325

Query: 282 -----------*ALHAYSTTNATNGGVSQSEMIQQMVIS-------ALPSIGIQGKSSN- 322
                       AL +    N T G    S   Q M  S        L  IG+   S + 
Sbjct: 326 GNHSKEQLQQFIALFSSQLPNVTMGSNEASSSKQPMDNSGISFNPTTLVFIGLLTVSRHT 385

Query: 323 -ASHPWFLDSGASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGDINSD----FR 377
            A+  W +DSGA++H+      ++          + + +G  + I+ VG +  +      
Sbjct: 386 LANETWIIDSGATHHVCHD-RSMYTSIDITTTSNVNLPNGMIVKISGVGIVQLNEHITLH 444

Query: 378 DVLVSPGLASNLLSVGQL 395
           +VL  P    NLLS+  L
Sbjct: 445 NVLYIPEFRLNLLSISSL 462


>UniRef100_Q9FWZ5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1404

 Score =  100 bits (248), Expect = 4e-19
 Identities = 101/409 (24%), Positives = 174/409 (41%), Gaps = 39/409 (9%)

Query: 5   SQKQIDNMCVRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALEEWET----- 59
           SQK I  + ++  G NY  W    +  + G  LWSH+   S+AP E    EE ET     
Sbjct: 4   SQKVITTVILQ--GGNYLTWSRTTKTVLCGRGLWSHVIS-SQAPKEDKEEEETETISPEE 60

Query: 60  -----KDAQIITWILSTINPQMINNLRSFSFAQEMWNYLKRIY-NQDNPAKRFQLELEIA 113
                +D  ++  + +++   ++        A+E+W+ LK +Y N+ N  + F+++  I 
Sbjct: 61  EKWFQEDQAVLALLQNSLETSILEGYSYCETAKELWDTLKNVYGNESNLTRVFEVKKAIN 120

Query: 114 NYKQGNSSVQEYYSGFLNLWTEHSAIIHADV-PNIYLAAVQEVYNTSKQDQFLMILRPEF 172
              Q +    +++  F +LW+E  ++    + P I    + E     K    L+ L P +
Sbjct: 121 ELSQEDLEFTKHFGKFRSLWSELKSLRPGTLDPKI----LHERREQDKVFGLLLTLNPGY 176

Query: 173 EVVRGSLLNRNVVPSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHD 232
             +   LL    +PSLD   S++ +E+      G  S   LI  +     A +   K  D
Sbjct: 177 NDLIKHLLRSEKLPSLDEVCSKIQKEQGSTGLFGGKSE--LITANKGEVVANKGVYKNED 234

Query: 233 MQQVQCFSCKQFGHIARSC-----SKKFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAY 287
            + + C  CK+ GH    C       K   +   R H   E +     +  S        
Sbjct: 235 RKLLTCDHCKKKGHTKDKCWLLHPHLKPAKFKDSRAHFSQETHEEQSQAGSSK------- 287

Query: 288 STTNATNGGVSQSEMIQQMV--ISALPSIGIQGKSSNASHPWFLDSGASYHMTGSLEYLH 345
             T+ + G   +   ++ ++  I +L   GI   S  +S    +DSGAS+HM  +   L 
Sbjct: 288 GETSTSFGDYVRKSDLEALIKSIVSLKESGITFSSQTSSGSIVIDSGASHHMISNSNLLD 347

Query: 346 NLHSYDGNKKIQIADGNTLSITDVGDINSDFRD--VLVSPGLASNLLSV 392
           N+    G+  + IA+G+ + I  +G++    +D      P   SNLLSV
Sbjct: 348 NIEPALGH--VIIANGDKVPIEGIGNLKLFNKDSKAFFMPKFTSNLLSV 394



 Score = 44.3 bits (103), Expect = 0.025
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 553 KCFLYLRNF*HMLKLNFKQVLKFF-TDSGGEYMSHEFQEYLQHKGILSQ*SCPNTP 607
           + F    NF   +   F   +K F TD+GGEY S +F+++L  +GI+ Q SCP TP
Sbjct: 552 RVFEAFTNFETYVTNQFNAKIKVFRTDNGGEYTSQKFRDHLAKRGIIHQTSCPYTP 607


>UniRef100_Q9FIC5 Retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score = 99.0 bits (245), Expect = 9e-19
 Identities = 94/406 (23%), Positives = 171/406 (41%), Gaps = 32/406 (7%)

Query: 18  GKNYSAWEFQFRMYVKGERLWSHLNGVSKAPTE-KAALEEWETKDAQIITWILSTINPQM 76
           G NY  W    R+ +K  + +   +G    P E     ++W   +A +++W+  TI+  +
Sbjct: 43  GPNYDEWATNLRLALKARKKFGFADGTIPQPDETNPDFDDWIANNALVVSWMKLTIHESL 102

Query: 77  INNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTEH 136
             ++     + +MW ++++ +   N  +  +L+ E+A  +Q  + ++ YY     LW   
Sbjct: 103 ATSMSHLDDSHDMWTHIQKRFGVKNGQRIQRLKTELATCRQKGTPIETYYGKLSQLWRSL 162

Query: 137 SAIIHADVPNIYLAAVQEVYNTSKQDQFLMIL-RPEFEVVRGSLLNRNVVPSLDTCVSEL 195
           +    A      +  V++     K  QFLM L    +  V+ +LL+R  +PSL+   + L
Sbjct: 163 ADYQQAKT----MEEVRKEREEDKLHQFLMGLDESMYGAVKSALLSRVPLPSLEEAYNTL 218

Query: 196 LR-EEQRLLTQGAMSR-DALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSCSK 253
            + EE + L++    R D  +  + T +   Q    G     V   S K      R  S 
Sbjct: 219 TQDEESKSLSRLHDERNDEKMRRNATSSSRNQSASMGRGSSVVPATSFKGKQSFGRGAS- 277

Query: 254 KFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAYSTTNATNGGVS-----QSEMIQQMVI 308
              N+    G            ST +   ++     T A   G+S     Q + ++QM+ 
Sbjct: 278 --ANHVANIGE-----------STTAATSSMSGSQLTEADRVGISGLNDEQWKQLRQMLK 324

Query: 309 SALPSIGIQGKSSNASHPWFLDSGASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITD 368
               +      S      W +DSGA+ HMTG+LE+L ++        I++ DG   + T 
Sbjct: 325 ERNFNSTNTKSSKFFLESWIIDSGATNHMTGTLEFLRDVCDMP-PIMIKLPDGRLTTSTK 383

Query: 369 VGDI----NSDFRDVLVSPGLASNLLSVGQLVVILMLIFHVLVVLC 410
            G +    + D ++V    GL  +L+SV QL      +F +   +C
Sbjct: 384 HGRVYLGSSLDLQEVFFVDGLHCHLISVSQLTRAKSCVFQITDKVC 429


>UniRef100_Q5XWR5 Putative retroelement pol polyprotein-like [Solanum tuberosum]
          Length = 1476

 Score = 96.3 bits (238), Expect = 6e-18
 Identities = 68/272 (25%), Positives = 123/272 (45%), Gaps = 20/272 (7%)

Query: 19  KNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALE--EWETKDAQIITWILSTINPQM 76
           +NYS W    ++ +  +     ++G  +    K  LE  +W+  +A +++W+++ ++  +
Sbjct: 25  ENYSLWSRAMQLTLLTKNKMGFIDGSLRRDDFKEELEKKQWDRCNAMVLSWLMNNVSTDL 84

Query: 77  INNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTEH 136
           ++ +   S A  +WN LK  +++ N ++ F L   I  + QG S V  YYS   +LW E+
Sbjct: 85  VSGILFRSNATLVWNDLKERFDKVNMSRIFHLHKAIVTHVQGVSPVSVYYSKLKDLWDEY 144

Query: 137 SAIIHADVPNIYLAA-VQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDTCVSEL 195
            +I+     +   +    +     K  QFLM L   +   R  +L  N  PS++ C + +
Sbjct: 145 DSILPPPSCDCEKSVDYTDSMLRQKLLQFLMGLNDNYGQARSQILMMNPSPSVNQCYAMI 204

Query: 196 LREE-QRLLTQGAMSRDALIF------ESTTVAYAAQRRGKG---------HDMQQVQCF 239
           +++E QR L+    + D           S   +  +Q  G G         H    + C 
Sbjct: 205 VQDESQRSLSGSGQTIDPTALFTHRPGGSGFGSQGSQGSGNGSSNGNSHRFHKGGNIYCD 264

Query: 240 SCKQFGHIARSCSK-KFCNYCKQRGHIITECY 270
            C   GHI  +C+K K C +C  +GH    CY
Sbjct: 265 FCNMKGHIRANCNKLKHCTHCNMQGHTKDTCY 296



 Score = 38.1 bits (87), Expect = 1.8
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 320 SSNASHPWFLDSGASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGDI----NSD 375
           S+  S  W +DSGA+ HM  +   L++  S     K+Q+  G++  +T  G         
Sbjct: 411 SNTHSSAWIVDSGATDHMVSNTTLLNHGLSVSHPGKVQLPTGDSAVVTHSGSSQLTGGDV 470

Query: 376 FRDVLVSPGLASNLLSVGQL 395
            ++VL  P    NLLSV +L
Sbjct: 471 VKNVLCVPTFQFNLLSVSKL 490



 Score = 36.2 bits (82), Expect = 6.8
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 558 LRNF*HMLKLNFKQVLKFF-TDSGGEYMSHEFQEYLQHKGILSQ*SCPNTP 607
           L+NF  M+   F Q +K F +D+G E+ + +     +  GI+ Q SCP+TP
Sbjct: 654 LQNFILMIDTQFGQKIKIFRSDNGTEFFNAQCDGLFKSHGIVHQSSCPHTP 704


>UniRef100_Q9LGZ8 Retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1098

 Score = 96.3 bits (238), Expect = 6e-18
 Identities = 103/424 (24%), Positives = 168/424 (39%), Gaps = 58/424 (13%)

Query: 20  NYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALEEWETKDAQIITWILSTINPQMINN 79
           NYS W  +    ++ ++    L+G    PT + AL  W+  ++ II WI ++I+P + + 
Sbjct: 35  NYSEWAEELMNSLQAKQKLGFLDGTIPKPTTEPALSSWKAANSMIIGWIRTSIDPTIRST 94

Query: 80  LRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTEHSAI 139
           +   S A+++W+ LK+ ++  N  ++  L+ EI   KQ   SV  YY     LW E    
Sbjct: 95  VAFVSDAKDLWDSLKQRFSNGNGVRKQLLKDEILACKQDGQSVLVYYGRLTKLWEELQNY 154

Query: 140 IHADVPNIYLAA-VQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDTCVSELLRE 198
             +       A  + +     K  QFL+ L   F  +R ++  ++ +P+L+   S ++ E
Sbjct: 155 KTSRTCTCEAAPDIAKEREDDKVHQFLLNLDERFRPIRSTITVQDPLPALNQVYSRVIHE 214

Query: 199 EQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSCSKKFCNY 258
           EQ L      SR     ++  V +  Q         QV   S  +F    R  S   C +
Sbjct: 215 EQNL----NASRIKDDIKTEAVGFTVQATPL-PPTPQVAAVSAPRF----RDRSSLTCTH 265

Query: 259 CKQRGHIITECYV-------------------------------------RPPPSTQSPM 281
             ++GH ITEC++                                     R   S     
Sbjct: 266 YHRQGHDITECFLVHGYPDWWLEQNGSNGSAGRGTSGRGNNGRGNNNRGGRSSSSGSRGK 325

Query: 282 *ALHAYSTTNATNGGVSQSEMIQQMVISALPSIGIQGKSSNASHPWF-----LDSGASYH 336
              +A ST        S ++ I Q+ IS L +      S   S   F     +D+GAS+H
Sbjct: 326 GRANAASTHPPPTSTPSNADQINQL-ISLLQAQNPATSSQKLSGKTFTTYVIIDTGASHH 384

Query: 337 MTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGDINSD----FRDVLVSPGLASNLLSV 392
           MTG +  L N+     +  +   DG     T  G +         DVL  P     L+SV
Sbjct: 385 MTGDITLLTNVEDIIPS-PVTKPDGTASRATKRGTLALHNAYVLPDVLFVPDFNCTLISV 443

Query: 393 GQLV 396
            +L+
Sbjct: 444 AKLL 447


>UniRef100_Q6ZI27 Hypothetical protein OJ1004_H01.32 [Oryza sativa]
          Length = 304

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 61/227 (26%), Positives = 110/227 (47%), Gaps = 13/227 (5%)

Query: 49  TEKAALEEWETKDAQIITWILSTINPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQL 108
           T+   ++ W+T D +++ +I  ++   +  + R  + A+EMW+YLK+ Y Q++ A RF L
Sbjct: 21  TDATKIKAWKTADDRVMGFIFMSVEVPIRMSFRDHTTAKEMWDYLKQRYTQESGALRFSL 80

Query: 109 ELEIANYKQGNSSVQEYYSGFLNLWTEHSAIIHADVPNIYLAAVQEVYNTSK-QDQFLMI 167
              + N +Q + S++E+Y+ F  L  +  A              +E ++      QF+M 
Sbjct: 81  LQNLHNLQQQDQSIEEFYNAFTRLSGQLEAQTPKGASGCAQCKAREKHDQENLVYQFVMR 140

Query: 168 LRPEFEVVRGSLLNRNVVPSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRR 227
           L  +FE +R  LL R   P++   +++L+ EE RL +        +   +  V  A QR 
Sbjct: 141 LSSQFESIRVQLLGRPTRPTMAEALADLIAEETRLCSLDTTPTPVV---THNVMAAPQRV 197

Query: 228 GKGHDMQQVQCFSCKQFGHIARSCSKKFCNYCKQRGHIITECYVRPP 274
           G              +F  IA+  S + C++CK+ GHI  +C+   P
Sbjct: 198 G-------APMGGIPEFSSIAK--SDRICSHCKKVGHISDDCFYLHP 235


>UniRef100_O82331 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 105/427 (24%), Positives = 174/427 (40%), Gaps = 77/427 (18%)

Query: 1   YTMDSQKQIDNMCVRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPT-------EKAA 53
           YT+ S    + + V+ + +NY  W+ QF  ++ G+ L   +NG   APT       +   
Sbjct: 8   YTLPSLNISNCVTVKLTDRNYILWKSQFESFLSGQGLLGFVNGAYAAPTGTVSGPQDAGV 67

Query: 54  LEEWETKDAQIITWILS---TINPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLEL 110
            E     D Q   W  S    ++  +++ +     + E+W  L + +N+ + ++ F+L+ 
Sbjct: 68  TEAIPNPDYQ--AWFRSDQVVMSEDILSVVVGSKTSHEVWMNLAKHFNRISSSRIFELQR 125

Query: 111 EIANYKQGNSSVQEYYSGFLNLWTEHSAIIHADVPNIYLAAVQEVYNTSKQDQFLMI--L 168
            + +  +   +++EY   +L    +  A + + V               K   F M+  L
Sbjct: 126 RLHSLSKEGKTMEEYLR-YLKTICDQLASVGSPV-------------AEKMKIFAMVHGL 171

Query: 169 RPEFEVVRGSL---LNRNVVPSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQ 225
             E+E +  SL   L+    PS +  V  L   + RL  QG    D     +     ++ 
Sbjct: 172 TREYEPLITSLEGTLDAFPGPSYEDVVYRLKNFDDRL--QGYTVTDVSPHLAFNTFRSSN 229

Query: 226 R-------RGKGHDMQQVQCFSCKQFGHIARSCS---KKFCNYCKQRGHIITECYVRPPP 275
           R       RGKG+   + + F  +QF   + S S   K  C  C +RGH   +C+ R   
Sbjct: 230 RGRGGRNNRGKGNFSTRGRGFQ-QQFSSSSSSVSASEKPMCQICGKRGHYALQCWHRFDD 288

Query: 276 STQSPM*ALHAYSTTNATNGGVSQSEMIQQMVISALPSIGIQGKSSNASHPWFLDSGASY 335
           S Q    A  A+S  + T+  VS                            W  DS A+ 
Sbjct: 289 SYQHSEAAAAAFSALHITD--VSDDS------------------------GWVPDSAATA 322

Query: 336 HMTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGDI-------NSDFRDVLVSPGLASN 388
           H+T +   L  +  Y GN  +  +DGN L IT +G         N   +DVLV P +A +
Sbjct: 323 HITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKS 382

Query: 389 LLSVGQL 395
           LLSV +L
Sbjct: 383 LLSVSKL 389



 Score = 38.1 bits (87), Expect = 1.8
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 554 CFLYLRNF*HMLKLNFKQVLKFFTDSGGEYMSHEFQEYLQHKGILSQ*SCPNTP 607
           C L+++    +  L   ++  F +D GGE+ S+ F ++LQ  GI    SCP+TP
Sbjct: 549 CSLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTP 602


>UniRef100_Q851Y3 Putative polyprotein [Oryza sativa]
          Length = 1299

 Score = 89.4 bits (220), Expect = 7e-16
 Identities = 83/347 (23%), Positives = 159/347 (44%), Gaps = 33/347 (9%)

Query: 19  KNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALE--EWETKDAQIITWILSTINPQM 76
           KNY +W  +  + +K + L  ++ G  K P   +++E   W T ++ ++ W+L+++ P +
Sbjct: 55  KNYLSWSRRALLILKTKGLEGYVTGEIKEPENISSVEWKTWSTTNSLVVAWLLTSLIPAI 114

Query: 77  INNLRSFSFAQEMWNYLKRIYN-QDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWT- 134
              + + S A EMW  L  +Y+ + N     + + +I+  +QG  SV EY +   +LW+ 
Sbjct: 115 ATTVETISSASEMWKTLTNLYSGEGNVMLMVEAQEKISVLRQGERSVAEYVAELKHLWSD 174

Query: 135 -EHSAIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDTCVS 193
            +H   +  + P+  +A +++     +  +FL  L  EFE  R ++ ++  +PSLD  ++
Sbjct: 175 LDHYDPLGLEHPDC-IAKMRKWIERRRVIEFLKGLNSEFEGRRDAMFHQTTLPSLDEAIA 233

Query: 194 ELLREE--QRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSC 251
            + +EE  +++L     S  +  +    VA + + R         +CF+C + GH+ R  
Sbjct: 234 AMAQEELKKKVLPSATPSSPSPTY---VVAQSKETR---------ECFNCGEMGHLIRDY 281

Query: 252 -SKKFCNYCKQRGHIITECYVRPPPSTQSPM*ALHAYSTTNATNGGV---------SQSE 301
            + +  +Y   RG        R              Y   +     V         S + 
Sbjct: 282 RAPRKPSY--GRGRFGDRGGARGGRGYAGRGNRGRGYEYRSDHRANVVTLEESCSGSTNV 339

Query: 302 MIQQMVISALPSIGIQGKSSNASHP-WFLDSGASYHMTGSLEYLHNL 347
            +  +V S+  +      S N+SH  W LDSGAS H+T +L  + +L
Sbjct: 340 DVANLVHSSSGNSNQAFMSINSSHSNWILDSGASRHVTVNLVSISSL 386



 Score = 47.4 bits (111), Expect = 0.003
 Identities = 19/32 (59%), Positives = 26/32 (80%)

Query: 577 TDSGGEYMSHEFQEYLQHKGILSQ*SCPNTPP 608
           TD+GGEY+++EF  +L  +GIL Q SCP+TPP
Sbjct: 451 TDNGGEYINNEFSSFLSSEGILHQTSCPDTPP 482


>UniRef100_Q9SLL4 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 98/445 (22%), Positives = 173/445 (38%), Gaps = 91/445 (20%)

Query: 1   YTMDSQKQIDNMCVRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALEE---- 56
           Y++ S    + + V  + KNY  W+ QF  ++ G+ L   + G   AP++ + + +    
Sbjct: 4   YSVPSLNISNCVTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGS 63

Query: 57  -----------WETKDAQIITWILSTINPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKR 105
                      W   D  + +W+L +    +++ + + + + E+W  +   +N+ + ++ 
Sbjct: 64  TSASPNPEYYTWFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRL 123

Query: 106 FQLELEIANYKQGNSSVQEYYSGFLNLWTEHSAIIHADVPNIYLAAVQEVYNTSKQDQFL 165
           F+L+  + N  + + S+ EY      +  +             LA+V     T K   F 
Sbjct: 124 FELQRRLQNVSKRDKSMDEYLKDLKTICDQ-------------LASVGSPV-TEKMKIFA 169

Query: 166 MI--LRPEFEVVRGSLLNRNVV---PSLDTCVSELLREEQRLLTQGAMSRDA----LIFE 216
            +  L  E+E ++ ++ N       PSL+  + +L   + RL  QG +   A    + F 
Sbjct: 170 ALNGLGREYEPIKTTIENSMDALPGPSLEDVIPKLTGYDDRL--QGYLEETAVSPHVAFN 227

Query: 217 STTV-------AYAAQRRGKGHDMQQVQCFSCKQFGHIARSCSKK------------FCN 257
            TT         + A  RGKG   +    FS +  G   +  S               C 
Sbjct: 228 ITTSDDSNASGYFNAYNRGKGKSNRGRNSFSTRGRGFHQQISSTNSSSGSQSGGTSVVCQ 287

Query: 258 YCKQRGHIITECYVRPPPSTQSPM*ALHAYSTTNATNGGVSQSEMIQQMVISALPSIGIQ 317
            C + GH   +C+ R                     N      E+ +     AL ++ I 
Sbjct: 288 ICGKMGHPALKCWHR--------------------FNNSYQYEELPR-----ALAAMRIT 322

Query: 318 GKSSNASHPWFLDSGASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGDI----- 372
             +    + W  DS A+ H+T S   L     Y G+  + +ADGN L IT  G       
Sbjct: 323 DITDQHGNEWLPDSAATAHVTNSPRSLQQSQPYHGSDAVMVADGNFLPITHTGSTNLASS 382

Query: 373 --NSDFRDVLVSPGLASNLLSVGQL 395
             N    DVLV P +  +LLSV +L
Sbjct: 383 SGNVPLTDVLVCPSITKSLLSVSKL 407



 Score = 37.0 bits (84), Expect = 4.0
 Identities = 18/42 (42%), Positives = 28/42 (65%), Gaps = 1/42 (2%)

Query: 566 KLNFKQVLKFFTDSGGEYMSHEFQEYLQHKGILSQ*SCPNTP 607
           +LN K +  F  D GGE+++H+F ++LQ+ GI    S P+TP
Sbjct: 580 QLNHK-ISVFQCDGGGEFVNHKFLQHLQNHGIQQHISYPHTP 620


>UniRef100_Q94IU9 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 94/430 (21%), Positives = 170/430 (38%), Gaps = 91/430 (21%)

Query: 11  NMCVRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAAL--------------EE 56
           ++ ++ +  NY  W+ QF   +  ++L   +NGV   P +   +              E+
Sbjct: 16  SVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQYED 75

Query: 57  WETKDAQIITWILSTINPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYK 116
           W   D  + +W+  T++ +++ ++ + + ++++W  L   +N+ + A+ F L   +    
Sbjct: 76  WFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQLLT 135

Query: 117 QGNSSVQEYYSGFLNLWTEHSAIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFE--- 173
           + + S+  Y   F  +    S+I             + V  + K   FL  L  E++   
Sbjct: 136 KKDKSLSVYCRDFKIICDSLSSI------------GKPVEESMKIFGFLNGLGREYDPIT 183

Query: 174 VVRGSLLNRNVVPSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAY----------- 222
            V  S L++   P+ +  +SE+   + +L      S D  +  +  +A+           
Sbjct: 184 TVIQSSLSKLPAPTFNDVISEVQGFDSKL-----QSYDDTVSVNPHLAFNTERSNSGAPQ 238

Query: 223 ----------AAQRRGKGHDMQQVQCFSCKQFGHIARSCSKKFCNYCKQRGHIITECYVR 272
                     + Q RG+G    + + FS  Q      S  +  C  C + GH   +CY R
Sbjct: 239 YNSNSRGRGRSGQNRGRGGYSTRGRGFSQHQSAS-PSSGQRPVCQICGRIGHTAIKCYNR 297

Query: 273 PPPSTQSPM*ALHAYSTTNATNGGVSQSEMIQQMVISALPSIGIQGKSSNASHPWFLDSG 332
              + QS                       +     SAL      GK       W+ DS 
Sbjct: 298 FDNNYQSE----------------------VPTQAFSALRVSDETGKE------WYPDSA 329

Query: 333 ASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGD--INSD-----FRDVLVSPGL 385
           A+ H+T S   L N  +Y+GN  + + DG  L IT VG   I+S        +VLV P +
Sbjct: 330 ATAHITASTSGLQNATTYEGNDAVLVGDGTYLPITHVGSTTISSSKGTIPLNEVLVCPAI 389

Query: 386 ASNLLSVGQL 395
             +LLSV +L
Sbjct: 390 QKSLLSVSKL 399


>UniRef100_Q6I5B6 Putative polyprotein [Oryza sativa]
          Length = 1204

 Score = 86.3 bits (212), Expect = 6e-15
 Identities = 97/439 (22%), Positives = 168/439 (38%), Gaps = 80/439 (18%)

Query: 14  VRFSGKNYSAWEFQFRMYVKGERLWSHLNGVSKAP------------------------- 48
           V F G NYS W    R++++G+RLW  L+     P                         
Sbjct: 15  VLFDGCNYSHWAQHMRLHMRGQRLWDVLSSELPCPPCPIAPTMPSLASQATDDDREKAKE 74

Query: 49  ----------TEKAALEEWETKDAQIITWILSTINPQMINNLRSFSFAQEMWNYLKRIYN 98
                     ++ A  + W  +DA+    +++++   +   + + + A  MW +L   Y 
Sbjct: 75  QFDDAMENYQSQFALYKAWLDEDARASAILVASMEIHLTGEVVTLTSAHLMWTHLHDRYA 134

Query: 99  QDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTEHSAI---------------IHAD 143
             + A    +  +  + +QG+S+V E+Y+   ++W +  ++                H D
Sbjct: 135 PTSDALYLAMVRQEQSLQQGDSTVDEFYTQLSSIWRQLDSLGPTICHTYPCCQRQRSHMD 194

Query: 144 VPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDTCVSELLREEQRLL 203
           +  IY               FL  LR E+E  R  LL+R+   ++   ++E+  EE RL 
Sbjct: 195 LRRIY--------------DFLTRLRSEYESTRAQLLSRHPRVTIMEALTEIRSEEIRLR 240

Query: 204 TQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSC-SKKFCNYCKQR 262
             G +   + +    TVA +A      H        S +    +  S      C YC + 
Sbjct: 241 EAGILPLPSSVLAVRTVASSASSTPAVHSTVSSSSSSARPPTTVVPSTRGHLHCTYCDKD 300

Query: 263 GHIITECYVRPPPSTQSPM*ALHAYSTTNATNGGVSQSEMIQQM----VISALPSIGIQG 318
           GH+ + C+ R     +    +     ++  ++GG    E++  +      +A  S+G   
Sbjct: 301 GHVESFCF-RKKKDLRRGNSSKGTSGSSQKSSGGSDSQEILMLLRRLTASAATGSVGSVA 359

Query: 319 KSSNASHPWFLDSGASYHMTGSLEYLHNLHSYDGNKKIQIADGNTLSITDVGDINSDFRD 378
             S  S    L S +S   + S      +H+ DG   + I    TLSI       S F  
Sbjct: 360 LPSAQSGSAVLGSSSSTEGSSSASVPTTVHTADGT-PLAIVGRGTLSI-------SSFSV 411

Query: 379 VLVS--PGLASNLLSVGQL 395
             VS  P LA  L+S GQL
Sbjct: 412 PAVSYVPKLAMQLMSAGQL 430



 Score = 40.8 bits (94), Expect = 0.28
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 559 RNF*HMLKLNFKQVLKFF-TDSGGEYMSHEFQEYLQHKGILSQ*SCP 604
           ++F  M++ +F   ++ F  DS GEY+S E + +L  +G LSQ SCP
Sbjct: 603 KSFARMIRTHFDSPIRVFRADSAGEYLSRELRVFLSEQGTLSQFSCP 649


>UniRef100_Q9MAJ8 F27F5.19 [Arabidopsis thaliana]
          Length = 1309

 Score = 85.9 bits (211), Expect = 8e-15
 Identities = 62/244 (25%), Positives = 113/244 (45%), Gaps = 8/244 (3%)

Query: 18  GKNYSAWEFQFRMYVKGERLWSHLNGVSKAP-TEKAALEEWETKDAQIITWILSTINPQM 76
           G +Y+ W    RM +  +   S ++G    P         W   ++ + TW+L+ ++ ++
Sbjct: 87  GTSYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFRIWSRCNSMVKTWLLNVVSKEI 146

Query: 77  INNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNLWTE- 135
            +++  +  A EMWN L   +   N  +++QLE  I   KQ N  +  YY+    LW + 
Sbjct: 147 YDSILYYEDAVEMWNDLFSRFRVSNLPRKYQLEQSIHTLKQRNLDLSTYYTKKKTLWVQL 206

Query: 136 -HSAIIHADVPNI-YLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDTCVS 193
            ++ ++     N  ++  + E   TS+  QFLM L   F  +RG +LN    P L    +
Sbjct: 207 ANTRVLTVRKCNCDHVKELLEEAETSRIIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYN 266

Query: 194 ELLREE-QRLLTQGAMSRDALIF--ESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARS 250
            L ++E QRL+    +S     F  +++ V  +     +G   ++ +C  C + GH+   
Sbjct: 267 MLDQDESQRLVGSTPLSNLTAAFQVQASPVIDSQVNMAQG-SYKKPKCSFCNKLGHLVDK 325

Query: 251 CSKK 254
           C KK
Sbjct: 326 CYKK 329


>UniRef100_Q9FKA8 Retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 370

 Score = 85.9 bits (211), Expect = 8e-15
 Identities = 65/268 (24%), Positives = 124/268 (46%), Gaps = 27/268 (10%)

Query: 14  VRFSGKNYSAWEFQFRMYVKGERLWSHLNG-VSKAPTEKAALEEWETKDAQIITWILSTI 72
           V  +G NY+ W  +    ++ +R    ++G + K  ++    E W+T ++ I+ WI  +I
Sbjct: 45  VVLNGDNYNEWSEEMLNALQAKRKTGFIDGTIQKPASDSPDFENWKTVNSMIVGWIRVSI 104

Query: 73  NPQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEIANYKQGNSSVQEYYSGFLNL 132
            P++ + +   S A  +W+ L++ ++  N  +  Q++ ++A+ +Q   +V +YY    NL
Sbjct: 105 EPKVKSTVTFISDAHLLWDELRQRFSVTNNVRVHQIKAQLASCRQEGQTVIDYYGRLCNL 164

Query: 133 WTE-----HSAII-HADVPNIYLAAVQEVYNTSKQDQFLMIL-RPEFEVVRGSLLNRNVV 185
           W E      SA+  H  V    L A+ +  +  K  QF++ L    F  +  +L+N + +
Sbjct: 165 WDELKNYQASAVCPHGSV----LTAIVKERDDEKLHQFVLGLDSARFSGLCTNLINMDPL 220

Query: 186 PSLDTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFG 245
           PSL    S+++REEQR+       +         V + A+        +Q    S     
Sbjct: 221 PSLGVAYSQVIREEQRIHASRTQEQ-----RQEVVGFVARH-------EQSSAMSSPAQS 268

Query: 246 HIARSCSKK---FCNYCKQRGHIITECY 270
            I  S  K     C++C + GH   +C+
Sbjct: 269 SIESSIVKSRPVLCSHCGRTGHEKKDCW 296


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.347    0.154    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,917,992,284
Number of Sequences: 2790947
Number of extensions: 74488889
Number of successful extensions: 346807
Number of sequences better than 10.0: 2843
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 2659
Number of HSP's that attempted gapping in prelim test: 339809
Number of HSP's gapped (non-prelim): 6551
length of query: 1309
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1170
effective length of database: 460,108,200
effective search space: 538326594000
effective search space used: 538326594000
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 81 (35.8 bits)