BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146711.3 - phase: 0
(61 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9AY98 Putative copia-type pol polyprotein [Oryza sativa] 74 1e-12
UniRef100_Q9SDD5 Similar to copia-type pol polyprotein [Oryza sa... 73 2e-12
UniRef100_Q8H8K3 Putative retroelement [Oryza sativa] 72 3e-12
UniRef100_Q7XM07 OSJNBa0084K01.24 protein [Oryza sativa] 72 3e-12
UniRef100_Q850V9 Putative polyprotein [Oryza sativa] 72 4e-12
UniRef100_Q8S5R3 Putative copia-type pol polyprotein [Oryza sativa] 72 5e-12
UniRef100_Q7XS40 OSJNBa0069D17.3 protein [Oryza sativa] 71 6e-12
UniRef100_Q94I66 Putative copia-like retroelement [Oryza sativa] 71 6e-12
UniRef100_Q7XP45 OSJNBa0063G07.6 protein [Oryza sativa] 70 1e-11
UniRef100_Q8LMY8 Putative polyprotein [Oryza sativa] 70 1e-11
UniRef100_Q8W2U1 Putative polyprotein [Oryza sativa] 70 1e-11
UniRef100_Q7XWL7 OSJNBb0052B05.12 protein [Oryza sativa] 70 1e-11
UniRef100_Q9ZSX0 Copia protein [Zea mays] 69 3e-11
UniRef100_Q8H6I4 Putative gag-pol polyprotein [Zea mays] 69 3e-11
UniRef100_Q7XLK0 OSJNBa0009K15.10 protein [Oryza sativa] 69 3e-11
UniRef100_Q8S479 Putative pol protein [Zea mays] 69 4e-11
UniRef100_Q84MV2 Putative gag-pol polyprotein [Oryza sativa] 69 4e-11
UniRef100_Q84MR5 Putative copia-type pol polyprotein [Oryza sativa] 69 4e-11
UniRef100_Q9XEJ4 Copia-type pol polyprotein [Zea mays] 68 5e-11
UniRef100_Q8H7T1 Putative Zea mays retrotransposon Opie-2 [Oryza... 68 5e-11
>UniRef100_Q9AY98 Putative copia-type pol polyprotein [Oryza sativa]
Length = 1778
Score = 73.6 bits (179), Expect = 1e-12
Identities = 33/50 (66%), Positives = 43/50 (86%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALSTTEAEY +A S
Sbjct: 1457 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNSIALSTTEAEYVAAGS 1506
>UniRef100_Q9SDD5 Similar to copia-type pol polyprotein [Oryza sativa]
Length = 940
Score = 72.8 bits (177), Expect = 2e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DADYAG K++RKSTSG+CQFL ++L WS +KQN++ALST EAEY S S
Sbjct: 788 DADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGS 837
>UniRef100_Q8H8K3 Putative retroelement [Oryza sativa]
Length = 1299
Score = 72.4 bits (176), Expect = 3e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1147 DSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1196
>UniRef100_Q7XM07 OSJNBa0084K01.24 protein [Oryza sativa]
Length = 543
Score = 72.4 bits (176), Expect = 3e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 391 DSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 440
>UniRef100_Q850V9 Putative polyprotein [Oryza sativa]
Length = 1128
Score = 72.0 bits (175), Expect = 4e-12
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 974 DSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGS 1023
>UniRef100_Q8S5R3 Putative copia-type pol polyprotein [Oryza sativa]
Length = 1866
Score = 71.6 bits (174), Expect = 5e-12
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
+ DYAG K++RKSTSG+CQFL ++L WS +KQN++ LSTTEAEY SA S
Sbjct: 1224 NVDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVVLSTTEAEYVSAGS 1273
>UniRef100_Q7XS40 OSJNBa0069D17.3 protein [Oryza sativa]
Length = 1156
Score = 71.2 bits (173), Expect = 6e-12
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALST EAEY +A S
Sbjct: 1004 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSFKKQNSIALSTAEAEYVAAGS 1053
>UniRef100_Q94I66 Putative copia-like retroelement [Oryza sativa]
Length = 809
Score = 71.2 bits (173), Expect = 6e-12
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DADY G K++RKSTSG+CQFL ++L WS +KQN++ LST EAEY SA S
Sbjct: 47 DADYVGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVTLSTAEAEYVSARS 96
>UniRef100_Q7XP45 OSJNBa0063G07.6 protein [Oryza sativa]
Length = 1539
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++R STSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1387 DSDYAGCKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1436
>UniRef100_Q8LMY8 Putative polyprotein [Oryza sativa]
Length = 1584
Score = 70.1 bits (170), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYA K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1432 DSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1481
>UniRef100_Q8W2U1 Putative polyprotein [Oryza sativa]
Length = 877
Score = 70.1 bits (170), Expect = 1e-11
Identities = 31/48 (64%), Positives = 41/48 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALST EAEY +A
Sbjct: 261 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNSIALSTAEAEYVAA 308
>UniRef100_Q7XWL7 OSJNBb0052B05.12 protein [Oryza sativa]
Length = 1549
Score = 70.1 bits (170), Expect = 1e-11
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DADYA K++RKSTSG+CQFL ++L WS +KQN +ALST EAEY SA S
Sbjct: 1397 DADYARCKVDRKSTSGTCQFLGRSLVSWSSKKQNFVALSTAEAEYISAGS 1446
>UniRef100_Q9ZSX0 Copia protein [Zea mays]
Length = 447
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 11 LDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
LD+DYAG K++RKSTSG+CQFL ++L W+ +KQ ++ALST EAEY +A
Sbjct: 340 LDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAA 388
>UniRef100_Q8H6I4 Putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 68.9 bits (167), Expect = 3e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYAG K++RKST+G+CQFL ++L WS +KQN +ALST EAEY +A +
Sbjct: 1670 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNCVALSTAEAEYIAAGA 1719
>UniRef100_Q7XLK0 OSJNBa0009K15.10 protein [Oryza sativa]
Length = 845
Score = 68.9 bits (167), Expect = 3e-11
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+DYA K++RKSTSGSCQ L ++L WS +KQN +ALST EAEY SA S
Sbjct: 693 DSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALSTAEAEYVSAGS 742
>UniRef100_Q8S479 Putative pol protein [Zea mays]
Length = 1553
Score = 68.6 bits (166), Expect = 4e-11
Identities = 30/48 (62%), Positives = 40/48 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
D+DYAG K++RKSTSG+CQFL ++L WS +KQ ++ALST EAEY +A
Sbjct: 1401 DSDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQTSVALSTAEAEYVAA 1448
>UniRef100_Q84MV2 Putative gag-pol polyprotein [Oryza sativa]
Length = 1975
Score = 68.6 bits (166), Expect = 4e-11
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 9 SLLDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
S D DYA K++RKSTSGSCQ L ++L WS +KQN++ALST EAEY SA S
Sbjct: 1819 SYSDLDYAVCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGS 1871
>UniRef100_Q84MR5 Putative copia-type pol polyprotein [Oryza sativa]
Length = 1896
Score = 68.6 bits (166), Expect = 4e-11
Identities = 30/48 (62%), Positives = 41/48 (84%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
D+DYAG K++RKST+G+CQFL ++L WS +KQN+IALST +AEY +A
Sbjct: 1301 DSDYAGCKVDRKSTTGTCQFLGRSLVSWSSKKQNSIALSTAKAEYVAA 1348
>UniRef100_Q9XEJ4 Copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 68.2 bits (165), Expect = 5e-11
Identities = 31/48 (64%), Positives = 40/48 (82%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
DAD+AG KI RKSTSG+CQFL ++L W+ +KQN++ALST EAEY +A
Sbjct: 910 DADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAA 957
>UniRef100_Q8H7T1 Putative Zea mays retrotransposon Opie-2 [Oryza sativa]
Length = 2145
Score = 68.2 bits (165), Expect = 5e-11
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DAD+AG KI+RKSTSG+C FL +L WS RKQ+++A ST EAEY +AAS
Sbjct: 1643 DADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAAS 1692
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.332 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,256,021
Number of Sequences: 2790947
Number of extensions: 1843666
Number of successful extensions: 6835
Number of sequences better than 10.0: 399
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 6443
Number of HSP's gapped (non-prelim): 401
length of query: 61
length of database: 848,049,833
effective HSP length: 37
effective length of query: 24
effective length of database: 744,784,794
effective search space: 17874835056
effective search space used: 17874835056
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146711.3