BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146709.5 + phase: 0 /pseudo
         (1304 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...   229  3e-58
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]        225  8e-57
UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidop...   224  1e-56
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]              220  2e-55
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops...   218  7e-55
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]                  214  1e-53
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]                  210  3e-52
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo...   209  4e-52
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop...   209  6e-52
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or...   205  8e-51
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa...   204  2e-50
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]      201  1e-49
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]             199  4e-49
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]                  196  4e-48
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza...   193  3e-47
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]                  191  1e-46
UniRef100_Q9LS18 Retroelement pol polyprotein-like [Arabidopsis ...   186  5e-45
UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidop...   183  3e-44
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                            181  2e-43
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]              179  5e-43

>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  229 bits (585), Expect = 3e-58
 Identities = 137/391 (35%), Positives = 219/391 (55%), Gaps = 46/391 (11%)

Query: 7   DIEKFTGSNDFGLWKVKMRA---ILIQQKCVEALKGEAQMSAHLTPAEKT---------- 53
           ++EKF G  D+ +WK K+ A   IL     ++  +   +  + L  +++           
Sbjct: 7   EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66

Query: 54  --EMNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
             E   KA SAI+L + D+VLR++ +E+TA +M   LD LYM+K+L +R   KQ+LY ++
Sbjct: 67  LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFK 126

Query: 112 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGK-EGT 170
           M E+  +   + EF +II DL N++V + DED+ + LL ALP++F+  KDT+ Y   +  
Sbjct: 127 MSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSI 186

Query: 171 ITLEEVQAALRTKEL---TKFKELKVDDSG---EGLNISRGRSHNKGKGKGKNSRSKSRS 224
           +TL+EV AA+ +KEL   +  K +KV   G   +  N ++G+   KGKGKGK  +SK + 
Sbjct: 187 LTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKKKP 246

Query: 225 KGDGNKTQYKCFICHNPGHFKKDCPERK------------DNGGGESSVQIASKDEGYES 272
                     C+ C   GHF+  CP +             ++ GG+ ++  A+   GY  
Sbjct: 247 ---------GCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAA---GYYV 294

Query: 273 AGALTVTSWEPEKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIR 332
           + AL+ T    E  W+LD+GCSYH+  ++E+F       GG VR+GN    +++G+GTIR
Sbjct: 295 SEALSSTEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIR 354

Query: 333 LKMFDDRDFLLKNVRYIPELKRNLISISMFD 363
           +K  D    +L NVRYIP++ RNL+S+  F+
Sbjct: 355 VKNSDGLTIVLTNVRYIPDMDRNLLSLGTFE 385


>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  225 bits (573), Expect = 8e-57
 Identities = 142/400 (35%), Positives = 225/400 (55%), Gaps = 49/400 (12%)

Query: 3   GSKWDIEKFTGSNDFGLWKVKM---------RAILIQQKCVEALKGEAQMSAHLTPAEKT 53
           G++ ++EKF G  D+ +WK K+          A+L + +     + +++ S      E+ 
Sbjct: 3   GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62

Query: 54  EMND------KAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQL 107
           +M        KA S I+L + D+VLR++ +E +A +M   LD LYM+K+L +R  LKQ+L
Sbjct: 63  KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122

Query: 108 YFYRMVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGK 167
           Y ++M E+  I   + EF  I+ DL N++V + DED+ + LL +LP+ F+  KDT+ Y  
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182

Query: 168 EGTI-TLEEVQAALRTKELTKFKELK--VDDSGEGLNI-----SRGRSHNKGKGKGKNSR 219
             T+ +L+EV AA+ ++EL +F  +K  +    EGL +     +RGRS  K KGKGK S+
Sbjct: 183 GKTVLSLDEVAAAIYSREL-EFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSK 241

Query: 220 SKSRSKGDGNKTQYKCFICHNPGHFKKDCPER-----KDNGG--GESSVQIASKDEG--- 269
           SKS+           C+IC   GH K  CP +     K+ G   GESS    +  EG   
Sbjct: 242 SKSKR---------GCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVN 292

Query: 270 -YESAG-----ALTVTSWEPEKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKAC 323
             ESAG     AL+ T    E  W++D+GC YH+  ++E+ E  + + GG VR+GN    
Sbjct: 293 FVESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSIS 352

Query: 324 KIQGMGTIRLKMFDDRDFLLKNVRYIPELKRNLISISMFD 363
           +++G+GT+R+   +     L+NVRYIP++ RNL+S+  F+
Sbjct: 353 RVKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFE 392


>UniRef100_Q9SJU6 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  224 bits (571), Expect = 1e-56
 Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 28/380 (7%)

Query: 7   DIEKFTGSNDFGLWKVKMRAI---------LIQQKCVEALKGEAQMSAHLTPAEKT---E 54
           ++EK  G  D+ LWK K+ A          L + + +E  +  A+  + LT  E     E
Sbjct: 7   EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66

Query: 55  MNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVE 114
              KA S +IL LG+ VLR+V +E TA  M   LD L+M KSL +R  LKQ+LY Y+M +
Sbjct: 67  KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126

Query: 115 SKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLE 174
           S  I E + +F K+I DL N+ V++ DED+ + LL +LP+ F+  KDT+ YGK  T+ L+
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALD 185

Query: 175 EVQAALRTKELTKFKELK-VDDSGEGLNI-SRGRSHNKGKGKGKNSRSKSRSKGDGNKTQ 232
           E+  A+R+K L      K + +S + L +  RGRS  + K   +N +S+SRSK    K  
Sbjct: 186 EITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERN-KSQSRSKSREKKV- 243

Query: 233 YKCFICHNPGHFKKDC---PERKDNGGGESSVQIASKDEGYESAGALTV------TSWEP 283
             C++C   GHFKK C    E+   G      + ++       A AL V       + E 
Sbjct: 244 --CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNADNQEV 301

Query: 284 EKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLL 343
           +  W++D+GCS+H+ PR+++F   +  + G V++ N    +I+G+G+IR++  D+   LL
Sbjct: 302 DNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLL 361

Query: 344 KNVRYIPELKRNLISISMFD 363
           KNVRY+P + +NLIS+   +
Sbjct: 362 KNVRYVPSMSKNLISMGTLE 381


>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
          Length = 1181

 Score =  220 bits (561), Expect = 2e-55
 Identities = 131/379 (34%), Positives = 217/379 (56%), Gaps = 27/379 (7%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVSAII 64
           K+D+        F LW+VKMRA+L QQ+  +AL G  + +   +  EK + + KA+S I 
Sbjct: 5   KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63

Query: 65  LCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 124
           L L + +L+EV +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ +   +M+ L+ 
Sbjct: 64  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123

Query: 125 FNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKE 184
           F +I+ DL +++V  +++D  L LLC+LP S+ NF+DT+LY ++ T+TL+EV  AL  KE
Sbjct: 124 FKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRD-TLTLKEVYDALHAKE 182

Query: 185 LTKFKELKVDDSGEGLNISRGRSHNKGKGKGKNSRSKSRSKGDG-------NKTQYK-CF 236
                ++K     EG N        +G  + KN+ +KSR K          ++ +YK C 
Sbjct: 183 -----KMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCK 237

Query: 237 ICHNPGHFKKDC--PERKDNGGGESSVQIASKDEGY------ESAGALTVTSW----EPE 284
            C   GH    C   + KD   G+   +   ++EG       E + A  + ++    +  
Sbjct: 238 YCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS 297

Query: 285 KSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLK 344
             W+LD+ C+YH+CP +++F T E+ +GG V +G++  C++ G+GT+++KMFD     L 
Sbjct: 298 DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 357

Query: 345 NVRYIPELKRNLISISMFD 363
           +VR+IP LKR+LIS+   D
Sbjct: 358 DVRHIPNLKRSLISLCTLD 376


>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  218 bits (556), Expect = 7e-55
 Identities = 140/388 (36%), Positives = 211/388 (54%), Gaps = 37/388 (9%)

Query: 7   DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKT------------- 53
           ++EKF G  D+ LWK K+ A +     +E L  E +     +  E +             
Sbjct: 7   EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66

Query: 54  -------EMNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQ 106
                  E   KA S IIL LG+ VLR+V ++ TA  M   LD L+M KSL +R  LKQ+
Sbjct: 67  LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126

Query: 107 LYFYRMVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYG 166
           LY Y+M E+  + E + +F K+I DL N+ V + DED+ + LL +LPR F+  K+T+ Y 
Sbjct: 127 LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186

Query: 167 KEGTITLEEVQAALRTKELTKFKELK-VDDSGEGLNI-SRGRSHNKGKGKGKNSRSKSRS 224
           K  T+ LEE+ +A+R+K L      K + ++ +GL +  RGRS  +GKG  KN +S+S+S
Sbjct: 187 KT-TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKN-KSRSKS 244

Query: 225 KGDGNKTQYKCFICHNPGHFKKDC---PERKDNGGGESSVQIASKDEGYESAGALTVT-- 279
           KG G      C+IC   GHFKK C    ER   G      + ++       A AL V+  
Sbjct: 245 KGAGK----TCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRA 300

Query: 280 ----SWEPEKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKM 335
               +     +W+LD+GCS+H+  RK++    +    G VR+GN+   +++G+G +R+K 
Sbjct: 301 LLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKN 360

Query: 336 FDDRDFLLKNVRYIPELKRNLISISMFD 363
            D    LL +VRYIPE+ +NLIS+   +
Sbjct: 361 EDGSTILLTDVRYIPEMSKNLISLGTLE 388


>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
          Length = 1280

 Score =  214 bits (546), Expect = 1e-53
 Identities = 131/377 (34%), Positives = 207/377 (54%), Gaps = 23/377 (6%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVSAII 64
           K+D+        F LW+VKMRA+L QQ   +AL G  + +   +  EK + + KA+S I 
Sbjct: 40  KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAMSYIH 98

Query: 65  LCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 124
           L L + +L+EV +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ +   +M+ L+ 
Sbjct: 99  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158

Query: 125 FNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKE 184
           F +I+ DL +I+V  ++ED  L LLC+LP S+ NF+DT+LY  + T+ L+EV  AL  KE
Sbjct: 159 FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHD-TLILKEVYDALHAKE 217

Query: 185 LTKFKELKVDD----SGEGLNISRGRSHNKGKGKGKNSRSKSRSKG-DGNKTQYK-CFIC 238
             K K++   +      EGL + RGR   K        +S S  +G   ++ +YK C  C
Sbjct: 218 --KMKKMVPSEGSNSQAEGL-VVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274

Query: 239 HNPGHFKKDCPERKDNGGGESSVQIASKDEGYESAGALTVTSWEPE------------KS 286
              GH   +C + +D            K E    A  +T    + E              
Sbjct: 275 KRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQ 334

Query: 287 WVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNV 346
           W+LD+  +YH+CP +++F T E  +GG V +G++  C++ G+GT+++KMFD     L +V
Sbjct: 335 WILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDV 394

Query: 347 RYIPELKRNLISISMFD 363
           R+IP LKR+LIS+   D
Sbjct: 395 RHIPNLKRSLISLCTLD 411


>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
          Length = 1211

 Score =  210 bits (534), Expect = 3e-52
 Identities = 130/379 (34%), Positives = 212/379 (55%), Gaps = 27/379 (7%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVSAII 64
           K+D+        F LW+VKMRA+L QQ   +AL G  + +   +  EK + + K +S I 
Sbjct: 5   KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63

Query: 65  LCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 124
           L L + +L+EV +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ +   +M+ L+ 
Sbjct: 64  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSA 123

Query: 125 FNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKE 184
           F KI+ DL +++V  ++ED  L LLC+LP S+ NF+DT+LY  + T+TL+EV  AL  KE
Sbjct: 124 FKKIVADLESMEVKYDEEDLCLILLCSLPSSYANFRDTILYSCD-TLTLKEVYDALHAKE 182

Query: 185 LTKFKELKVDDSGEGLNISRGRSHNKGKGKGKNSRSKSRSKGDG-------NKTQYK-CF 236
                ++K     EG N        +G+ + KN+ SKSR K          ++ +YK C 
Sbjct: 183 -----KIKKMVPSEGSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCK 237

Query: 237 ICHNPGHFKKDC--PERKDNGGGESSVQIASKDEGY------ESAGALTVTSW----EPE 284
                GH   +C   + KD   G+   +   ++EG       E + A  + ++    +  
Sbjct: 238 YYKRDGHDISECWKLQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTS 297

Query: 285 KSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLK 344
             W+LD+ C+YH+C  +++F T E  +GG V +G++  C++ G+ T+++KMFD     L 
Sbjct: 298 DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLS 357

Query: 345 NVRYIPELKRNLISISMFD 363
           +VR+IP LKR+LIS+   D
Sbjct: 358 DVRHIPNLKRSLISLCTLD 376


>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Contains: Protease (EC 3.4.23.-); Reverse transcriptase
           (EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
          Length = 1328

 Score =  209 bits (532), Expect = 4e-52
 Identities = 127/369 (34%), Positives = 203/369 (54%), Gaps = 19/369 (5%)

Query: 3   GSKWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVSA 62
           G K+++ KF G N F  W+ +MR +LIQQ   + L  +++    +   +  +++++A SA
Sbjct: 3   GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62

Query: 63  IILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQL 122
           I L L D V+  +  E TA  +W +L+SLYM+K+L ++  LK+QLY   M E    +  L
Sbjct: 63  IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 123 TEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRT 182
             FN +I  LAN+ V +E+EDK + LL +LP S++N   T+L+GK  TI L++V +AL  
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTSALLL 181

Query: 183 KELTKFKELKVDDSGEGL-NISRGRSHNKGKGKGKNSRSKSRSKGDGNKTQYKCFICHNP 241
            E  +    K ++ G+ L    RGRS+ +       S ++ +SK         C+ C+ P
Sbjct: 182 NEKMR---KKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQP 238

Query: 242 GHFKKDCPERKDNGGGESSVQ-----IASKDEGYESAGALTVTSWE-------PEKSWVL 289
           GHFK+DCP  +  G GE+S Q      A+  +  ++   L +   E       PE  WV+
Sbjct: 239 GHFKRDCPNPR-KGKGETSGQKNDDNTAAMVQNNDNV-VLFINEEEECMHLSGPESEWVV 296

Query: 290 DSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYI 349
           D+  S+H  P ++ F      + G V++GN    KI G+G I +K       +LK+VR++
Sbjct: 297 DTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHV 356

Query: 350 PELKRNLIS 358
           P+L+ NLIS
Sbjct: 357 PDLRMNLIS 365


>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  209 bits (531), Expect = 6e-52
 Identities = 139/380 (36%), Positives = 206/380 (53%), Gaps = 46/380 (12%)

Query: 7   DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDK-------- 58
           ++EKF G  D+ +WK K+ A L       ALK E  +   +   + TE  +K        
Sbjct: 7   EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66

Query: 59  -------AVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
                  A SAI+L + D+VLR++ +E +A +M   LD LYM+K+L +R   KQ+LY ++
Sbjct: 67  LEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFK 126

Query: 112 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYG-KEGT 170
           M E+  I   + EF +II DL N +V + DED+ + LL +LP+ F+  +DT+ YG    T
Sbjct: 127 MSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVT 186

Query: 171 ITLEEVQAALRTKELTKFKELK-VDDSGEGLNI-----SRGRSHNKG-KGKGKNSRSKSR 223
           ++L+EV AA+ +KEL      K +    EGL +     +RGR+  +G     K SRSKSR
Sbjct: 187 LSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSR 246

Query: 224 SKGDGNKTQYKCFICHNPGHFKKDCPERKDNGGGESSVQIASKDEGYESAGALTVTSWEP 283
           SK         C+IC              ++  G S+    S+  G   + AL+ T    
Sbjct: 247 SKKG-------CWIC-------------GESSNGSSNY---SEANGLYVSEALSSTDIHL 283

Query: 284 EKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLL 343
           E  WV+D+GCSYH+  ++E+FE L    GG VR+GN    K++G+GTIR+K        L
Sbjct: 284 EDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRL 343

Query: 344 KNVRYIPELKRNLISISMFD 363
            NVRYIPE+ RNL+S+  F+
Sbjct: 344 TNVRYIPEMDRNLLSLGTFE 363


>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
          Length = 556

 Score =  205 bits (521), Expect = 8e-51
 Identities = 117/342 (34%), Positives = 201/342 (58%), Gaps = 14/342 (4%)

Query: 18  GLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVSAIILCLGDKVLREVSR 77
           G  +++++ +L QQ   +AL  E  M   +   +  EM  +A + I L L D V+ +V  
Sbjct: 152 GSSQMRLKDLLAQQGISKAL--EETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMD 209

Query: 78  EATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDDLANIDV 137
           E T   +W+KL SLYM+KSL  +  LKQQLY  +M E   + + +  FN+++ DL+ +DV
Sbjct: 210 EKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDV 269

Query: 138 NLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDSG 197
            L+DEDK + LLC+LP SFE+   T+ +GK+ T+  EE+ ++L  ++L + K+ +  ++ 
Sbjct: 270 KLDDEDKAIILLCSLPPSFEHVVTTLTHGKD-TVKTEEIISSLLARDLRRSKKNEAMEAS 328

Query: 198 EGLNISRGRSHNKGKGKGKNSRSKSRSKGDGNKTQYKCFICHNPGHFKKDCPERKDNGGG 257
           +  ++     H+   G      SKS+ KG       +C+ CH  GH +++CP  K   GG
Sbjct: 329 QAESLLVKAKHDHEAGV-----SKSKEKG------ARCYKCHEFGHIRRNCPLLKKRKGG 377

Query: 258 ESSVQIASKDEGYESAGALTVTSWEPEKSWVLDSGCSYHICPRKEYFETLELKEGGVVRL 317
            +S+     +    S   LTV++ +  ++W+LDS  SYH+  + E+F + +  + GVV L
Sbjct: 378 IASLAARGDNSDSSSHEILTVSNEKSGEAWMLDSASSYHVTSKWEWFSSYKSGDFGVVYL 437

Query: 318 GNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIPELKRNLISI 359
           GN+ + ++ G+G I+ KM+D  + LL +VR++P L+++LIS+
Sbjct: 438 GNDTSYRVIGVGDIKFKMYDGNEVLLSDVRHVPGLRKSLISL 479


>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1326

 Score =  204 bits (518), Expect = 2e-50
 Identities = 127/372 (34%), Positives = 210/372 (56%), Gaps = 20/372 (5%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMSAHLTPAEKTEMNDKAVSAI 63
           K+D+        F LW+VKMRAIL Q   + EAL+   +  +    AE+   + KA+  I
Sbjct: 5   KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLI 64

Query: 64  ILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 123
            L L + +L+EV +E TA  +W KL+S+ M+K L  +  +K +L+ +++ ES  ++  ++
Sbjct: 65  QLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 124

Query: 124 EFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTK 183
            F +I+ DL +I+V  +DED  L LLC+LP S+ NF+DT+L  ++  +TL EV  AL+ +
Sbjct: 125 VFKEIVVDLVSIEVQFDDEDLGLLLLCSLPSSYANFRDTILLSRD-ELTLAEVYEALQNR 183

Query: 184 ELTKFKELKVDDS----GEGLNI---SRGRSHNKGKGKGKNSRSKSRSKGDGNKTQYKCF 236
           E  K K +   D+    GE L +   S  R++N    + K S+S+ RSK  G K    C 
Sbjct: 184 E--KMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDK-SQSRGRSKSRGKKF---CK 237

Query: 237 ICHNPGHFKKDC--PERKDNGGGESSVQIASKDEGYESAGALTVTSW--EPEKSWVLDSG 292
            C    HF ++C   + K+    +    + +  E  +S   L V +        W+LD+ 
Sbjct: 238 YCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTA 297

Query: 293 CSYHICPRKEYFETLE-LKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIPE 351
           CS+HIC  +++F + + ++ G VVR+G++   +I G+G++++K  D     LK+VR+IP 
Sbjct: 298 CSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPG 357

Query: 352 LKRNLISISMFD 363
           + RNLIS+S  D
Sbjct: 358 MARNLISLSTLD 369


>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
          Length = 1230

 Score =  201 bits (511), Expect = 1e-49
 Identities = 134/387 (34%), Positives = 194/387 (49%), Gaps = 54/387 (13%)

Query: 7   DIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEK-------------T 53
           ++EKF G  D+ LWK K+ A +       AL+    +S  L   E+              
Sbjct: 7   EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66

Query: 54  EMNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMV 113
           E   KA S I+L + D+VLR+  +E TA SM   LD LYM+K+L +R  LKQ+LY Y+M 
Sbjct: 67  EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQ 126

Query: 114 ESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGK-EGTIT 172
           E+  +   + EF ++I DL N +V + DED+ + LL +LP+ F+  KDT+ YG    T++
Sbjct: 127 ENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLS 186

Query: 173 LEEVQAALRTKELTKFKELK-VDDSGEGLNIS---RGRSHNKGKGKGKNSRSKSRSKGDG 228
           ++EV AA+ +KEL      K +    EGL +      R  ++ K KG   RS+SRSKG  
Sbjct: 187 VDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSRSKG-- 244

Query: 229 NKTQYKCFICHNPGHFKKDCPER-------KDNGGGESSVQI-----ASKDEGYESAGAL 276
                 C+IC   GHFK  CP +       KD   G            S+  GY  + AL
Sbjct: 245 ---WKGCWICGEEGHFKTSCPNKGKQQNKGKDQASGSKGEAATIKGNTSEGSGYYVSEAL 301

Query: 277 TVTSWEPEKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMF 336
             T       WV+D+GC+YH+  +KE+FE L    GG VR+GN    K +          
Sbjct: 302 HSTDVNLGNEWVMDTGCNYHMTHKKEWFEELSEDAGGTVRMGNKSTSKFR---------- 351

Query: 337 DDRDFLLKNVRYIPELKRNLISISMFD 363
                    V+YIP++ RNL+S+   +
Sbjct: 352 ---------VKYIPDMDRNLLSMGTLE 369


>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
          Length = 1328

 Score =  199 bits (507), Expect = 4e-49
 Identities = 126/368 (34%), Positives = 198/368 (53%), Gaps = 16/368 (4%)

Query: 3   GSKWDIEKFTGSND-FGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVS 61
           G K+++ KF G    F +W+ +M+ +LIQQ   +AL G+++    +   +  E+++KA S
Sbjct: 3   GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62

Query: 62  AIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQ 121
           AI L L D V+  +  E +A  +W KL++LYM+K+L ++  LK+QLY   M E    +  
Sbjct: 63  AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122

Query: 122 LTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALR 181
           L   N +I  LAN+ V +E+EDK + LL +LP S++    T+L+GK+ +I L++V +AL 
Sbjct: 123 LNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKD-SIQLKDVTSALL 181

Query: 182 TKELTKFKELKVDDSGEGLNISRGRSHNKGKGKGKNSRSKSRSKGDGNKTQYKCFICHNP 241
             E  K ++   +     +  SRGRS+ +       S ++ +SK         C+ C  P
Sbjct: 182 LNE--KMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQP 239

Query: 242 GHFKKDCPERKDNGGGESSVQ-----IASKDEGYESAGALTVTSWE------PEKSWVLD 290
           GHFK+DCP  K  G GESS Q      A+  +  +    L     E       E  WV+D
Sbjct: 240 GHFKRDCPNPK-RGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTESEWVVD 298

Query: 291 SGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIP 350
           +  SYH  P ++ F      + G V++GN    KI G+G I  K       +LK+VR++P
Sbjct: 299 TAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVP 358

Query: 351 ELKRNLIS 358
           +L+ NLIS
Sbjct: 359 DLRMNLIS 366


>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
          Length = 1322

 Score =  196 bits (498), Expect = 4e-48
 Identities = 121/370 (32%), Positives = 204/370 (54%), Gaps = 16/370 (4%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMSAHLTPAEKTEMNDKAVSAI 63
           K+D+        F LW+VKMRA+L Q   + EAL+   +       AE+   + KA+S I
Sbjct: 5   KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64

Query: 64  ILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 123
            L L + +L+EV ++ TA  +W KL+S+ M+K L  +  +K +L+ +++ ES  ++  ++
Sbjct: 65  QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124

Query: 124 EFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTK 183
            F +I+ DL +++V  +DED  L LLC+LP S+ NF+ T+L  ++  +TL EV  AL+ +
Sbjct: 125 VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRD-ELTLAEVYEALQNR 183

Query: 184 ELTK--FKELKVDDSGEGLNISRGRSHNKGKGKGKN---SRSKSRSKGDGNKTQYKCFIC 238
           E  K   +       GE L + RGRS  +      +   S+S+ RSK  G K    C  C
Sbjct: 184 EKMKGMVQSYASSSKGEALQV-RGRSEQRTYNDSNDHDKSQSRGRSKSRGKKF---CKYC 239

Query: 239 HNPGHFKKDC--PERKDNGGGESSVQIASKDEGYESAGALTVTSW--EPEKSWVLDSGCS 294
               HF ++C   + K+    +    + +  E  +S   L V +        W+LD+ CS
Sbjct: 240 KKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACS 299

Query: 295 YHICPRKEYFETLE-LKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIPELK 353
           +HIC  +++F + + ++   VVR+G++   +I G+G++++K  D     LK+VR+IP + 
Sbjct: 300 FHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMA 359

Query: 354 RNLISISMFD 363
           RNLIS+S  D
Sbjct: 360 RNLISLSTLD 369


>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
          Length = 1229

 Score =  193 bits (491), Expect = 3e-47
 Identities = 123/372 (33%), Positives = 206/372 (55%), Gaps = 20/372 (5%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCV-EALKGEAQMSAHLTPAEKTEMNDKAVSAI 63
           K+D+        F LW+VKMRA+L Q   + EAL+   +       AE+   + KA+S I
Sbjct: 2   KYDLPLQDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 61

Query: 64  ILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLT 123
            L L + +L++V +E TA  +W KL+S+ M+K L  +  +K +L+ +++ ES  ++  ++
Sbjct: 62  QLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHIS 121

Query: 124 EFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTK 183
            F +II DL +++V  +DED  L LLC+LP  + NF+DT+L  ++  +TL EV  AL+ +
Sbjct: 122 VFKEIIADLVSMEVQFDDEDLGLLLLCSLPSLYANFRDTILLSRD-ELTLAEVYEALQNR 180

Query: 184 ELTKFKELKVDDS----GEGLNI---SRGRSHNKGKGKGKNSRSKSRSKGDGNKTQYKCF 236
           E  K K +   D+    G+ L +   S  R++N    + K S+S+ RSK  G K    C 
Sbjct: 181 E--KMKGMVQSDASSSKGKALQVRGRSEQRTYNDSNDRDK-SQSRGRSKSRGKKF---CK 234

Query: 237 ICHNPGHFKKDC--PERKDNGGGESSVQIASKDEGYESAGALTVTSW--EPEKSWVLDSG 292
            C    HF ++C   + K+    +    + +  E  +SA  L   +        W+LD+ 
Sbjct: 235 YCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSADCLVFFAGCVASHDEWILDTA 294

Query: 293 CSYHICPRKEYFET-LELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIPE 351
           C + IC  +++F +   ++ G VVR+G+N   +I G+G++++K  D     LK+VR+IP 
Sbjct: 295 CLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPG 354

Query: 352 LKRNLISISMFD 363
           + RNLIS+S  D
Sbjct: 355 MARNLISLSTLD 366


>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
          Length = 1243

 Score =  191 bits (485), Expect = 1e-46
 Identities = 122/362 (33%), Positives = 206/362 (56%), Gaps = 16/362 (4%)

Query: 5   KWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEKTEMNDKAVSAII 64
           K+D+        F LW+VKMRA+L QQ   +AL G  + +   +  EK + + KA+S I 
Sbjct: 5   KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63

Query: 65  LCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTE 124
           L L + +L+EV +E TA  +W KL+ + MTK L  +  LKQ+L+ +++ + + +M+ L+ 
Sbjct: 64  LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSA 123

Query: 125 FNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKE 184
           F +I+ DL +++V  +++D  L LLC+LP S+ NF+ T+LY ++ T+TL+EV  A   KE
Sbjct: 124 FKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRD-TLTLKEVYDAFHAKE 182

Query: 185 LTKFKELKVDD----SGEGLNISRGRSHNKGKGKGKNSRSKSRSKG-DGNKTQYK-CFIC 238
             K K++   +      EGL + RGR   K        +S S  +G   ++ +YK C  C
Sbjct: 183 --KMKKMVTSEGSNSQAEGL-VVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKSCKYC 239

Query: 239 HNPGHFKKDCPERKDNGGGESSVQIASKDEGYESAGALTVTSWEPE-KSWVLDSGCSYHI 297
              GH   +C + +D    + + +   K +  E   A  VT  + + +  V  +GC+   
Sbjct: 240 KRDGHDISECWKLQDK--DKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ-- 295

Query: 298 CPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIPELKRNLI 357
              +++F T E  +GG V +G++  C++ G+GT+++KMFD     L +V++IP LKR+LI
Sbjct: 296 TSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLI 355

Query: 358 SI 359
           S+
Sbjct: 356 SL 357


>UniRef100_Q9LS18 Retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1338

 Score =  186 bits (471), Expect = 5e-45
 Identities = 116/384 (30%), Positives = 196/384 (50%), Gaps = 33/384 (8%)

Query: 9   EKFTGSNDFGLWKVKMRAILIQQKCVEALK--------------------GEAQMSAHLT 48
           E+F G  D+ LWK K+ A L      +ALK                     E +   H  
Sbjct: 18  ERFDGRGDYTLWKRKLLAQLEVMGISDALKEKEEKKEAVETERVKVVSSSSERRREEHKK 77

Query: 49  PAEKTEMNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLY 108
              + E  +KA S IIL + D +LR +  E TA  M + LD LY++  L+ R  LK++L+
Sbjct: 78  DHSREEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLF 137

Query: 109 FYRMVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLYGKE 168
            ++M E+K + E + +F +I++DL  +DV + DEDK   LL +LPR  E  K ++ Y +E
Sbjct: 138 EFKMSENKAVEENIEDFFRIVEDLEKLDVYVSDEDKAFMLLLSLPRKLEQLKYSLDYCEE 197

Query: 169 GTITLEEVQAALRTKELTKFK-ELKVDDSGEGLNISRGRSHNKGKGKGKNSRSKSRSKGD 227
             +TL  V  A+  KEL   + E + ++  + L++   R   +   + + ++ K + + +
Sbjct: 198 -PLTLGRVMTAIYKKELEVAQIERQTEEEEKRLSL---RERERSDYREEQAKGKEKVRSE 253

Query: 228 GNKTQYKCFICHNPGHFKKDCPERKDNGGGESSVQI-ASKDEGYESAGALTVTSWEPEKS 286
             + +  C+ C   GH K +C + K N   + SV+   S  +   S G++ + S    ++
Sbjct: 254 AREKKGPCWRCGQKGHVKTECFQEKKNKSRKKSVRYEESSAQSIVSGGSVFMVSEAAARA 313

Query: 287 -------WVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDR 339
                  W+ D+GC+ H+  RKE+FE L   E G V + N+   +++G+G++R+   D  
Sbjct: 314 SKGSSEEWICDTGCTSHMSSRKEWFEDLVFSESGNVSMANDTTLQVKGIGSVRILNDDGT 373

Query: 340 DFLLKNVRYIPELKRNLISISMFD 363
             LL NV YIP + +NLIS+   +
Sbjct: 374 TVLLTNVMYIPGMSKNLISLGTLE 397


>UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  183 bits (464), Expect = 3e-44
 Identities = 109/328 (33%), Positives = 175/328 (53%), Gaps = 24/328 (7%)

Query: 52  KTEMNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYR 111
           + E  DKA + I L + DKVLR++    TA   W  LD L+M +SL HR   +   Y ++
Sbjct: 42  RLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFK 101

Query: 112 MVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLY-GKEGT 170
           M E+K I E + +F KI+ DL ++ +++ DE + + LL +LP  ++   +TM Y      
Sbjct: 102 MQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREK 161

Query: 171 ITLEEVQAALRTKELTKFKELKVDDSG--EGLNISRGRSHNKGKGKGKNSRSKSRSK-GD 227
           + L++V  A R KE    +EL  ++    EG + +RGR   K   +G   +++SRSK  D
Sbjct: 162 LRLDDVMVAARDKE----RELSQNNRPVVEG-HFARGRPDGKNNNQGNKGKNRSRSKSAD 216

Query: 228 GNKTQYKCFICHNPGHFKKDC------PERKDNGGGESSVQIASKDEGYESAGALTVT-- 279
           G +    C+IC   GHFKK C       + K  G       +A   E +  A  L  T  
Sbjct: 217 GKRV---CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDE 273

Query: 280 ----SWEPEKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKM 335
               +      WVLD+GCS+H+ PRK++F+  +    G V++GN+    ++G+G+I+++ 
Sbjct: 274 TLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRN 333

Query: 336 FDDRDFLLKNVRYIPELKRNLISISMFD 363
            D    +L +VRY+P + RNLIS+   +
Sbjct: 334 SDGSQVILTDVRYMPNMTRNLISLGTLE 361


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  181 bits (458), Expect = 2e-43
 Identities = 120/372 (32%), Positives = 198/372 (52%), Gaps = 24/372 (6%)

Query: 2   MGSKWDIEKFTGSNDFGLWKVKMRAILIQQKCVEALKGEAQMSAHLTPAEK-TEMNDKAV 60
           M +K++IEKF G N F LWK+K++AIL +  C+ A+   ++     T  +K +EMN+ A+
Sbjct: 1   MAAKFEIEKFNGKN-FSLWKLKVKAILRKDNCLAAI---SERPVDFTDDKKWSEMNEDAM 56

Query: 61  SAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIME 120
           + + L + D VL  +  + TA  +W+ L+ LY  KSL ++  LK++LY  RM ES  + E
Sbjct: 57  ADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTE 116

Query: 121 QLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFE----NFKDTMLYGKEGTITLEEV 176
            L   N +   L ++   +E +++   LL +LP S++    N  + +L      +  ++V
Sbjct: 117 HLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNIL---TDYLVFDDV 173

Query: 177 QAALRTKELTK--FKELKVD-DSGEGLNISRGRSHNKGKGKGKNSRSKSRSKGDGNKTQY 233
            AA+  +E  +   ++ +V+    E L + RGRS  +G+  G+  RSKS      +K   
Sbjct: 174 AAAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGR-GRSKS------SKKNL 226

Query: 234 KCFICHNPGHFKKDCPERKDNGGGESSVQIASKDEGYESAGALTVTSWEPEKS--WVLDS 291
            C+ C   GH KKDC     N   + +V   S D       A          +  W++DS
Sbjct: 227 TCYNCGKKGHLKKDCWNLAQNSNPQGNVASTSDDGSALCCEASIAREGRKRFADIWLIDS 286

Query: 292 GCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLLKNVRYIPE 351
           G +YH+  RKE+F   E   GG V   ++ A +I G+GTI+LKM+D     +++VR++  
Sbjct: 287 GATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKG 346

Query: 352 LKRNLISISMFD 363
           LK+NL+S  + D
Sbjct: 347 LKKNLLSYGILD 358


>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
          Length = 1356

 Score =  179 bits (454), Expect = 5e-43
 Identities = 113/382 (29%), Positives = 196/382 (50%), Gaps = 27/382 (7%)

Query: 7   DIEKFTGSNDFGLWKVKMRAIL------------IQQKCVEALKGEAQMSA--------- 45
           +I+ F G  DF LWK++++A L               K V   K EA+  +         
Sbjct: 9   EIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSGTK 68

Query: 46  HLTPAEKTEMNDKAVSAIILCLGDKVLREVSREATAVSMWNKLDSLYMTKSLAHRQCLKQ 105
            +    K E +++A + II  + D VL +V+  AT   +W  L+  YM  SL +R   + 
Sbjct: 69  EVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQL 128

Query: 106 QLYFYRMVESKPIMEQLTEFNKIIDDLANIDVNLEDEDKVLHLLCALPRSFENFKDTMLY 165
           +LY ++MV +  I + + EF +I+ +L ++++ +++E + + +L +LP S    K T+ Y
Sbjct: 129 KLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKY 188

Query: 166 GKEGTITLEEVQAALRT--KELTKFKELKVDDSGEGLNISRGRSHNKGKGKGKNSRSKSR 223
           G + T+T+++V ++ ++  +EL +  +L    +       RGR   +   KG   + +SR
Sbjct: 189 GNK-TLTVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSR 247

Query: 224 SKGDGNKTQYKCFICHNPGHFKKDCPERKDNGGGESSVQIASKDEGYESAGALTVTSWEP 283
           S    +KT+  C+ C   GH KKDC  RK     E   +     E    + AL+V     
Sbjct: 248 SN---SKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSEALSVNEQMV 304

Query: 284 EKSWVLDSGCSYHICPRKEYFETLELKEGGVVRLGNNKACKIQGMGTIRLKMFDDRDFLL 343
           +  W+LDSGC+ H+  R+++F + + K    + LG++ + + QG GTIR+        +L
Sbjct: 305 KDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKIL 364

Query: 344 KNVRYIPELKRNLISISMFDGL 365
           +NV+Y+P L+RNLIS    D L
Sbjct: 365 ENVKYVPHLRRNLISTGTLDKL 386


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.357    0.158    0.567 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,787,831,081
Number of Sequences: 2790947
Number of extensions: 64433284
Number of successful extensions: 316886
Number of sequences better than 10.0: 745
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 314845
Number of HSP's gapped (non-prelim): 1340
length of query: 1304
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1165
effective length of database: 460,108,200
effective search space: 536026053000
effective search space used: 536026053000
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 81 (35.8 bits)