BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.3 + phase: 0 /pseudo
(122 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9FG78 Protein transport protein SEC23 [Arabidopsis th... 71 6e-12
UniRef100_Q84WI4 Hypothetical protein [Arabidopsis thaliana] 71 6e-12
UniRef100_Q75KX1 Hypothetical protein OJ1365_D05.6 [Oryza sativa] 60 1e-08
UniRef100_UPI000021B0BD UPI000021B0BD UniRef100 entry 57 1e-07
UniRef100_Q9NFN9 Putative Sec23 protein [Drosophila melanogaster] 57 1e-07
UniRef100_Q9VNF8 CG1250-PA [Drosophila melanogaster] 57 1e-07
UniRef100_Q95TD2 GH01163p [Drosophila melanogaster] 57 1e-07
UniRef100_Q7PY59 ENSANGP00000012825 [Anopheles gambiae str. PEST] 57 1e-07
UniRef100_Q8IGT0 RE35250p [Drosophila melanogaster] 56 2e-07
UniRef100_UPI00003C1604 UPI00003C1604 UniRef100 entry 55 3e-07
UniRef100_UPI0000431D8D UPI0000431D8D UniRef100 entry 55 4e-07
UniRef100_UPI0000431D8C UPI0000431D8C UniRef100 entry 55 4e-07
UniRef100_UPI00002F9DF5 UPI00002F9DF5 UniRef100 entry 53 1e-06
UniRef100_UPI000023D053 UPI000023D053 UniRef100 entry 53 1e-06
UniRef100_Q8C1E4 Mus musculus adult male tongue cDNA, RIKEN full... 52 2e-06
UniRef100_Q5R9P3 Hypothetical protein DKFZp459E2428 [Pongo pygma... 52 2e-06
UniRef100_Q5R5U8 Hypothetical protein DKFZp459O136 [Pongo pygmaeus] 52 2e-06
UniRef100_Q9C284 Probable SEC23 [Neurospora crassa] 52 2e-06
UniRef100_Q01405 Protein transport protein Sec23A [Mus musculus] 52 2e-06
UniRef100_Q15436 Protein transport protein Sec23A [Homo sapiens] 52 2e-06
>UniRef100_Q9FG78 Protein transport protein SEC23 [Arabidopsis thaliana]
Length = 736
Score = 70.9 bits (172), Expect = 6e-12
Identities = 43/86 (50%), Positives = 53/86 (61%), Gaps = 10/86 (11%)
Query: 32 ITVAIEDIHSTYNFKSRNR---STGVAFSAALGLLECCFVNTGSRIMVFAS-----GPGL 83
+T A E+I + K +R STG A S ALGLLE C V TGSRIMVF S GPG+
Sbjct: 219 LTSAFEEIIPLVDVKPGHRPHRSTGAAISTALGLLEGCSVTTGSRIMVFTSGPATRGPGI 278
Query: 84 VLDSDFWQSMRTHNDIYICNGHLAVY 109
++DSD S+RTH D I GH++ Y
Sbjct: 279 IVDSDLSNSIRTHRD--IITGHVSYY 302
>UniRef100_Q84WI4 Hypothetical protein [Arabidopsis thaliana]
Length = 794
Score = 70.9 bits (172), Expect = 6e-12
Identities = 43/86 (50%), Positives = 53/86 (61%), Gaps = 10/86 (11%)
Query: 32 ITVAIEDIHSTYNFKSRNR---STGVAFSAALGLLECCFVNTGSRIMVFAS-----GPGL 83
+T A E+I + K +R STG A S ALGLLE C V TGSRIMVF S GPG+
Sbjct: 277 LTSAFEEIIPLVDVKPGHRPHRSTGAAISTALGLLEGCSVTTGSRIMVFTSGPATRGPGI 336
Query: 84 VLDSDFWQSMRTHNDIYICNGHLAVY 109
++DSD S+RTH D I GH++ Y
Sbjct: 337 IVDSDLSNSIRTHRD--IITGHVSYY 360
>UniRef100_Q75KX1 Hypothetical protein OJ1365_D05.6 [Oryza sativa]
Length = 757
Score = 60.1 bits (144), Expect = 1e-08
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 32 ITVAIEDIHSTYNFKSRNR---STGVAFSAALGLLE-CCFVNTGSRIMVFAS-----GPG 82
IT AIED+ S +R +TG A S A+ LLE CC N G RIMVF S GPG
Sbjct: 241 ITSAIEDLRSMSACPRGHRPLRATGAAISTAVALLEGCCSPNAGGRIMVFTSGPTTVGPG 300
Query: 83 LVLDSDFWQSMRTHNDIYICNGHL 106
LV+++D +++R+H DI+ N L
Sbjct: 301 LVVETDLGKAIRSHRDIFNGNAPL 324
>UniRef100_UPI000021B0BD UPI000021B0BD UniRef100 entry
Length = 763
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVFAS-----GPGLVLDSDFWQSMRTHNDI 99
R TGVA S A+GLLE F N+G RIM+FA+ GPG+V+ S+ + MR+H+DI
Sbjct: 265 RCTGVALSVAVGLLESSFQNSGGRIMLFAAGPATEGPGMVVSSELREPMRSHHDI 319
>UniRef100_Q9NFN9 Putative Sec23 protein [Drosophila melanogaster]
Length = 769
Score = 57.0 bits (136), Expect = 1e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDIY 100
RSTG A S A+GLLEC + NTG RIM F + GPG V+D + +R+H+DI+
Sbjct: 266 RSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIH 321
>UniRef100_Q9VNF8 CG1250-PA [Drosophila melanogaster]
Length = 773
Score = 57.0 bits (136), Expect = 1e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDIY 100
RSTG A S A+GLLEC + NTG RIM F + GPG V+D + +R+H+DI+
Sbjct: 270 RSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIH 325
>UniRef100_Q95TD2 GH01163p [Drosophila melanogaster]
Length = 312
Score = 57.0 bits (136), Expect = 1e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDIY 100
RSTG A S A+GLLEC + NTG RIM F + GPG V+D + +R+H+DI+
Sbjct: 68 RSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIH 123
>UniRef100_Q7PY59 ENSANGP00000012825 [Anopheles gambiae str. PEST]
Length = 783
Score = 56.6 bits (135), Expect = 1e-07
Identities = 28/55 (50%), Positives = 37/55 (66%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RSTG A S A+GLLEC + NTG RIM+F + GPG V+D + +R+H+DI
Sbjct: 280 RSTGAALSIAVGLLECTYPNTGGRIMLFVGGPCSQGPGQVVDDELKHPIRSHHDI 334
>UniRef100_Q8IGT0 RE35250p [Drosophila melanogaster]
Length = 773
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDIY 100
RSTG A S A+GLLEC + NTG RIM F + GPG V+D + +R+H DI+
Sbjct: 270 RSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHYDIH 325
>UniRef100_UPI00003C1604 UPI00003C1604 UniRef100 entry
Length = 773
Score = 55.5 bits (132), Expect = 3e-07
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 44 NFKSRNRSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHND 98
N K R TGVA S A+G+LE F NTG+R+M+F GPG+V+ ++ + +R+H+D
Sbjct: 263 NDKRSQRCTGVALSVAVGMLETTFPNTGARVMLFCGGPATEGPGMVVSTELRERIRSHHD 322
Query: 99 I 99
I
Sbjct: 323 I 323
>UniRef100_UPI0000431D8D UPI0000431D8D UniRef100 entry
Length = 765
Score = 55.1 bits (131), Expect = 4e-07
Identities = 28/55 (50%), Positives = 37/55 (66%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RSTGVA + A GLLE + NTG+RIM+F + GPG V+ D Q +R+H+DI
Sbjct: 265 RSTGVALAVATGLLEASYANTGARIMLFVGGPCSQGPGQVVTDDLRQPIRSHHDI 319
>UniRef100_UPI0000431D8C UPI0000431D8C UniRef100 entry
Length = 764
Score = 55.1 bits (131), Expect = 4e-07
Identities = 28/55 (50%), Positives = 37/55 (66%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RSTGVA + A GLLE + NTG+RIM+F + GPG V+ D Q +R+H+DI
Sbjct: 265 RSTGVALAVATGLLEASYANTGARIMLFVGGPCSQGPGQVVTDDLRQPIRSHHDI 319
>UniRef100_UPI00002F9DF5 UPI00002F9DF5 UniRef100 entry
Length = 674
Score = 53.1 bits (126), Expect = 1e-06
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDIYICNG 104
RSTGVA S A+GLLE F NTG+R+M+F GPG+V+ + +R+ +DI N
Sbjct: 236 RSTGVALSVAVGLLEGAFPNTGARVMLFIGGPPTQGPGMVVGDELKTPIRSWHDIQKDNA 295
Query: 105 -HL--AVYTSKLLRGCRCV 120
HL A TS+ L+ C +
Sbjct: 296 RHLKKATKTSRELKVCGAI 314
>UniRef100_UPI000023D053 UPI000023D053 UniRef100 entry
Length = 771
Score = 53.1 bits (126), Expect = 1e-06
Identities = 31/77 (40%), Positives = 44/77 (56%), Gaps = 9/77 (11%)
Query: 32 ITVAIEDIHS----TYNFKSRNRSTGVAFSAALGLLECCFVNTGSRIMVFA-----SGPG 82
+T A+E + N + R TGVA S A+GLLE F N G RIM+FA GPG
Sbjct: 243 LTKALESLQKDPWPVANDRRNLRCTGVALSVAVGLLESSFQNAGGRIMLFAGGPATEGPG 302
Query: 83 LVLDSDFWQSMRTHNDI 99
+V+ + + +R+H+DI
Sbjct: 303 MVVGPELREPIRSHHDI 319
>UniRef100_Q8C1E4 Mus musculus adult male tongue cDNA, RIKEN full-length enriched
library, clone:2310044N18 product:PROTEIN TRANSPORT
PROTEIN SEC23A (SEC23-RELATED PROTEIN A) homolog [Mus
musculus]
Length = 765
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RS+GVA S A+GLLEC F NTG+RIM+F GPG+V+ + +R+ +DI
Sbjct: 262 RSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDI 316
>UniRef100_Q5R9P3 Hypothetical protein DKFZp459E2428 [Pongo pygmaeus]
Length = 765
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RS+GVA S A+GLLEC F NTG+RIM+F GPG+V+ + +R+ +DI
Sbjct: 262 RSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDI 316
>UniRef100_Q5R5U8 Hypothetical protein DKFZp459O136 [Pongo pygmaeus]
Length = 765
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RS+GVA S A+GLLEC F NTG+RIM+F GPG+V+ + +R+ +DI
Sbjct: 262 RSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDI 316
>UniRef100_Q9C284 Probable SEC23 [Neurospora crassa]
Length = 775
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVFA-----SGPGLVLDSDFWQSMRTHNDI 99
R TGVA S A+GLLE F N G RIM+FA GPG+V+ + + +R+H+DI
Sbjct: 266 RCTGVALSVAVGLLETSFQNAGGRIMLFAGGPATEGPGMVVGPELREPIRSHHDI 320
>UniRef100_Q01405 Protein transport protein Sec23A [Mus musculus]
Length = 765
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RS+GVA S A+GLLEC F NTG+RIM+F GPG+V+ + +R+ +DI
Sbjct: 262 RSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDI 316
>UniRef100_Q15436 Protein transport protein Sec23A [Homo sapiens]
Length = 765
Score = 52.4 bits (124), Expect = 2e-06
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
RS+GVA S A+GLLEC F NTG+RIM+F GPG+V+ + +R+ +DI
Sbjct: 262 RSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDI 316
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.326 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,273,582
Number of Sequences: 2790947
Number of extensions: 7075924
Number of successful extensions: 17543
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17427
Number of HSP's gapped (non-prelim): 81
length of query: 122
length of database: 848,049,833
effective HSP length: 98
effective length of query: 24
effective length of database: 574,537,027
effective search space: 13788888648
effective search space used: 13788888648
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146683.3