Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146681.8 + phase: 0 
         (173 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9SK79 Hypothetical protein At2g20220 [Arabidopsis tha...   131  8e-30
UniRef100_UPI00003119FB UPI00003119FB UniRef100 entry                  38  0.12
UniRef100_UPI000025C10B UPI000025C10B UniRef100 entry                  35  0.62
UniRef100_Q98CM8 ATP-dependent nuclease subunit A [Rhizobium loti]     35  0.62
UniRef100_Q8YNV6 Alr4455 protein [Anabaena sp.]                        34  1.8
UniRef100_UPI00002D7C79 UPI00002D7C79 UniRef100 entry                  33  2.4
UniRef100_O14206 Hypothetical protein C1B9.03c in chromosome I [...    33  2.4
UniRef100_Q8ZVG2 Valyl-tRNA synthetase [Pyrobaculum aerophilum]        33  3.1
UniRef100_UPI00002435B0 UPI00002435B0 UniRef100 entry                  33  4.0
UniRef100_Q7PWZ4 ENSANGP00000004153 [Anopheles gambiae str. PEST]      33  4.0
UniRef100_Q6HH66 Hypothetical protein [Bacillus thuringiensis]         32  5.2
UniRef100_UPI000036CB46 UPI000036CB46 UniRef100 entry                  32  6.8
UniRef100_UPI000023F000 UPI000023F000 UniRef100 entry                  32  6.8
UniRef100_Q8L7N3 Hypothetical protein At1g78790 [Arabidopsis tha...    32  6.8
UniRef100_Q7Y5A8 Gp61 DNA primase subunit [Bacteriophage RB69]         32  6.8
UniRef100_Q5RCD4 Hypothetical protein DKFZp459D2032 [Pongo pygma...    32  6.8
UniRef100_Q5R607 Hypothetical protein DKFZp459D0927 [Pongo pygma...    32  6.8
UniRef100_Q7Z753 DEAH (Asp-Glu-Ala-His) box polypeptide 30, isof...    32  6.8
UniRef100_O94965 KIAA0890 protein [Homo sapiens]                       32  6.8
UniRef100_Q9HEI9 Related to the component Tra1 of the SAGA compl...    32  6.8

>UniRef100_Q9SK79 Hypothetical protein At2g20220 [Arabidopsis thaliana]
          Length = 190

 Score =  131 bits (329), Expect = 8e-30
 Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 6/154 (3%)

Query: 9   SLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDV 68
           SL  LCI  L  QLL  ++     IP +YELPS LLD +++ L   AL  F  +MPF  +
Sbjct: 6   SLAFLCIQSLKIQLLESDNP----IPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCL 61

Query: 69  NEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQ-PSDWQKAYWEAHLQNC 127
           +  +   D      RKR+R+  L ++W+ LF+LRWPD +++++ P+DWQ+ YWE HLQNC
Sbjct: 62  DSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNC 121

Query: 128 LDEAAEIALISPFKGRLADINISGTMLSCFLCNE 161
           +DEAAE+AL   F GR+  IN+S  +L  ++C+E
Sbjct: 122 VDEAAEVALRPTFSGRICSINVSDNILR-YICHE 154


>UniRef100_UPI00003119FB UPI00003119FB UniRef100 entry
          Length = 616

 Score = 37.7 bits (86), Expect = 0.12
 Identities = 30/116 (25%), Positives = 48/116 (40%), Gaps = 16/116 (13%)

Query: 17  HLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQ-----DVNEE 71
           + AN +  G D+V+ +  + Y LP H  DD+ +  TP  L+   L   +Q      + + 
Sbjct: 291 NFANHMSGGNDDVMGMFSLFYGLPGHYYDDIRNDKTPPVLFDEMLRQDYQFGLFGALEDA 350

Query: 72  DFSRDDSTNNKRK------RSRDWNLNTAWQKLFELRWPD-----LINQIQPSDWQ 116
              R    +  RK      ++ D  L   WQ+    R PD     L+    P D+Q
Sbjct: 351 QKYRQSILSGLRKQVFVSEQTDDTQLIGDWQQWLAKRSPDRPWFSLVYLSSPGDYQ 406


>UniRef100_UPI000025C10B UPI000025C10B UniRef100 entry
          Length = 275

 Score = 35.4 bits (80), Expect = 0.62
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 17  HLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQ 66
           + AN +  G D+V+ +  + Y LP H  DD+ +  TP  L+   L   +Q
Sbjct: 184 NFANHMSGGNDDVMGMFSLFYGLPGHYYDDIRNDKTPPVLFDEMLRQDYQ 233


>UniRef100_Q98CM8 ATP-dependent nuclease subunit A [Rhizobium loti]
          Length = 1170

 Score = 35.4 bits (80), Expect = 0.62
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 4    EAPPSSLITLCIDHLANQLLFGEDEVIAII-----PVIYELPSHLLDDLISRLT 52
            E PP+ L+ L +     Q L+   EV A +     P + ELP+H++DD ++RLT
Sbjct: 1115 EVPPAYLLQLALYRALLQPLYPGREVKAALLFTEAPRLIELPAHVMDDALARLT 1168


>UniRef100_Q8YNV6 Alr4455 protein [Anabaena sp.]
          Length = 253

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 94  AWQKLFELRWPDLINQIQPSDWQKAYWEAH--LQNCLDEAAEIALISPFKG 142
           AW  + E+ +P L +   P +W K YWE    LQN LD   E+ +IS   G
Sbjct: 70  AW--MAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLD--IEVPVISAVNG 116


>UniRef100_UPI00002D7C79 UPI00002D7C79 UniRef100 entry
          Length = 347

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 40  PSHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNT--AWQK 97
           P   LD+ ++ L  +++  F+LHMP  ++N ED      +     +  ++ L+   AWQ 
Sbjct: 95  PEQQLDESLTALKQNSVPIFYLHMPATEINLEDTLASVQSAYAAGKFEEFGLSNFPAWQV 154

Query: 98  LFELRWPDLINQIQPSDWQKAYWEAHLQNCLDEAAEIALISPFKGRLADINISGTMLSCF 157
           +   ++      + P+ +Q  Y      N L+  +E  L+   +         G++ S F
Sbjct: 155 VEISQYCQRKGIVLPTVYQGVY------NALNRTSEYELVPVLRNYGIKYYTHGSLASGF 208

Query: 158 L 158
           L
Sbjct: 209 L 209


>UniRef100_O14206 Hypothetical protein C1B9.03c in chromosome I [Schizosaccharomyces
           pombe]
          Length = 389

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 18/74 (24%), Positives = 36/74 (48%)

Query: 19  ANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDVNEEDFSRDDS 78
           A+QLL  + + I +I +   +   L+      +    LYH H+H   +++ ++D   + S
Sbjct: 276 ASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQQDNFHEQS 335

Query: 79  TNNKRKRSRDWNLN 92
              K KR ++ + N
Sbjct: 336 RALKEKRKKEQDEN 349


>UniRef100_Q8ZVG2 Valyl-tRNA synthetase [Pyrobaculum aerophilum]
          Length = 799

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 54  HALYHFHLHMPFQD-----VNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLIN 108
           HALY+F  H  F D     V    ++R+     + +R+  W L TAW+   +L  P    
Sbjct: 638 HALYNFIWH-EFADHYIELVKSRAYNREGVFTEEEQRAAIWTLYTAWRYSLKLLAP---- 692

Query: 109 QIQPSDWQKAYWEAHLQNCLDEAAE 133
            I P    K + EA+ ++  DE  E
Sbjct: 693 -IMPFVTDKIWREAYGRSIHDEMIE 716


>UniRef100_UPI00002435B0 UPI00002435B0 UniRef100 entry
          Length = 1161

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 10/64 (15%)

Query: 104 PDLINQIQPSDWQKAY------WEAHLQNCLDEAAEIALISPFKGRLADINISGTMLSCF 157
           PD I  I P + Q+AY      ++  L + L +  EIA +  F+GR  DI I    +SC 
Sbjct: 775 PDQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIII----MSCV 830

Query: 158 LCNE 161
             NE
Sbjct: 831 RANE 834


>UniRef100_Q7PWZ4 ENSANGP00000004153 [Anopheles gambiae str. PEST]
          Length = 1120

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 10/64 (15%)

Query: 104 PDLINQIQPSDWQKAY------WEAHLQNCLDEAAEIALISPFKGRLADINISGTMLSCF 157
           PD I  I P + Q+AY      ++  L + L +  EIA +  F+GR  DI I    +SC 
Sbjct: 797 PDQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIII----MSCV 852

Query: 158 LCNE 161
             NE
Sbjct: 853 RANE 856


>UniRef100_Q6HH66 Hypothetical protein [Bacillus thuringiensis]
          Length = 310

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 53  PHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQI 110
           P+ L H+   M F+ +N  ++  +D T    K       N A + +   +W  L+N++
Sbjct: 132 PYDLVHYKNTMKFKHINLSEYHFEDETEENEKIVEGIENNPALENIIPPKWYSLVNEL 189


>UniRef100_UPI000036CB46 UPI000036CB46 UniRef100 entry
          Length = 581

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (51%)

Query: 24  FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
           FG   VI +   +Y +  H L+D++++L  H   H H H   +D
Sbjct: 481 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 524


>UniRef100_UPI000023F000 UPI000023F000 UniRef100 entry
          Length = 3880

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 11  ITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLH 62
           + LC+D+L    L   D ++A  PVI EL + L D     L PH   HFH H
Sbjct: 852 LELCVDNLTADYL---DPIMA--PVIDELMTALFD----HLKPHPYSHFHAH 894


>UniRef100_Q8L7N3 Hypothetical protein At1g78790 [Arabidopsis thaliana]
          Length = 104

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 105 DLINQIQPSDWQKAYWEAHLQNCLDEA-AEIALISPFKGRLADINISGTMLSCFL 158
           DLI+ I    W + + E    + +D   AE+AL +  K RLA  N +   LSC L
Sbjct: 10  DLIHAIFKHIWARRFRERERSDAIDATEAEVALGTTKKNRLASANANALKLSCEL 64


>UniRef100_Q7Y5A8 Gp61 DNA primase subunit [Bacteriophage RB69]
          Length = 340

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 1/32 (3%)

Query: 94  AWQKL-FELRWPDLINQIQPSDWQKAYWEAHL 124
           +W +L F L WP L+N+IQP  ++K   E  L
Sbjct: 147 SWNRLWFTLEWPKLVNKIQPGTYKKEIPEPRL 178


>UniRef100_Q5RCD4 Hypothetical protein DKFZp459D2032 [Pongo pygmaeus]
          Length = 1166

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (51%)

Query: 24  FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
           FG   VI +   +Y +  H L+D++++L  H   H H H   +D
Sbjct: 575 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 618


>UniRef100_Q5R607 Hypothetical protein DKFZp459D0927 [Pongo pygmaeus]
          Length = 1194

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (51%)

Query: 24  FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
           FG   VI +   +Y +  H L+D++++L  H   H H H   +D
Sbjct: 603 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 646


>UniRef100_Q7Z753 DEAH (Asp-Glu-Ala-His) box polypeptide 30, isoform 2 [Homo sapiens]
          Length = 1155

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (51%)

Query: 24  FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
           FG   VI +   +Y +  H L+D++++L  H   H H H   +D
Sbjct: 564 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 607


>UniRef100_O94965 KIAA0890 protein [Homo sapiens]
          Length = 1210

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (51%)

Query: 24  FGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
           FG   VI +   +Y +  H L+D++++L  H   H H H   +D
Sbjct: 619 FGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESED 662


>UniRef100_Q9HEI9 Related to the component Tra1 of the SAGA complex [Neurospora
           crassa]
          Length = 3940

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 11  ITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLH 62
           + LC+D+L    L   D ++A  PVI EL + L D     L PH   HFH H
Sbjct: 881 LELCVDNLTADYL---DPIMA--PVIDELMAALFD----HLKPHPYNHFHAH 923


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.323    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,790,628
Number of Sequences: 2790947
Number of extensions: 12809665
Number of successful extensions: 28946
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 28930
Number of HSP's gapped (non-prelim): 25
length of query: 173
length of database: 848,049,833
effective HSP length: 118
effective length of query: 55
effective length of database: 518,718,087
effective search space: 28529494785
effective search space used: 28529494785
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 70 (31.6 bits)


Medicago: description of AC146681.8