BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.1 - phase: 0 /pseudo
(191 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q5WML9 Putative polyprotein [Oryza sativa] 56 6e-07
UniRef100_Q75H20 Putative polyprotein [Oryza sativa] 56 6e-07
UniRef100_Q6AV66 Hypothetical protein OSJNBa0035N15.2 [Oryza sat... 56 6e-07
UniRef100_Q6AUU4 Putative pol polyprotein [Oryza sativa] 56 6e-07
UniRef100_Q9XE85 Polyprotein [Sorghum bicolor] 55 1e-06
UniRef100_Q75KD0 Putative polyprotein [Oryza sativa] 55 1e-06
UniRef100_Q5W696 Putative polyprotein [Oryza sativa] 55 1e-06
UniRef100_Q7XNM2 OSJNBb0068N06.8 protein [Oryza sativa] 55 1e-06
UniRef100_Q9AVM7 Reverse transcriptase [Chrysanthemum x morifolium] 54 2e-06
UniRef100_Q8S669 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q8S644 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q8LMV8 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q8LMA6 Putative retroelement [Oryza sativa] 54 2e-06
UniRef100_Q8LM00 Putative retroelement [Oryza sativa] 54 2e-06
UniRef100_Q8LLX9 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q8H870 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q8H832 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q7F9M3 OSJNBa0017P10.12 protein [Oryza sativa] 54 2e-06
UniRef100_Q6UU96 Putative polyprotein [Oryza sativa] 54 2e-06
UniRef100_Q6AU11 Putative retrotransposon protein, 5'-partial [O... 54 2e-06
>UniRef100_Q5WML9 Putative polyprotein [Oryza sativa]
Length = 1310
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 556 RIDDLFDQLEGATVFSKIDLRSRYHQLRIREEDIPKTAFTTR 597
>UniRef100_Q75H20 Putative polyprotein [Oryza sativa]
Length = 1116
Score = 55.8 bits (133), Expect = 6e-07
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF TQ
Sbjct: 778 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTQ 819
>UniRef100_Q6AV66 Hypothetical protein OSJNBa0035N15.2 [Oryza sativa]
Length = 1169
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 318 RIDDLFDQLKGATVFSKIDLRSRYHQLRIREEDIPKTAFTTR 359
>UniRef100_Q6AUU4 Putative pol polyprotein [Oryza sativa]
Length = 922
Score = 55.8 bits (133), Expect = 6e-07
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 222 RIDDLFDQLKGATVFSKIDLRSRYHQLRIREEDIPKTAFTTR 263
>UniRef100_Q9XE85 Polyprotein [Sorghum bicolor]
Length = 1484
Score = 55.1 bits (131), Expect = 1e-06
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GACV SKI+ RS YH ++ + D+PKTAF T+
Sbjct: 632 RIDDLFDQLRGACVFSKIDLRSGYHQLKIRNSDIPKTAFTTR 673
>UniRef100_Q75KD0 Putative polyprotein [Oryza sativa]
Length = 934
Score = 55.1 bits (131), Expect = 1e-06
Identities = 26/42 (61%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RSRYH ++ + ED+PKTAF T+
Sbjct: 143 RIDDLFDQLKGAKVFSKIDLRSRYHQLRIREEDIPKTAFTTR 184
>UniRef100_Q5W696 Putative polyprotein [Oryza sativa]
Length = 1092
Score = 54.7 bits (130), Expect = 1e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ + ED+PKTAF TQ
Sbjct: 420 RIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTQ 461
>UniRef100_Q7XNM2 OSJNBb0068N06.8 protein [Oryza sativa]
Length = 947
Score = 54.7 bits (130), Expect = 1e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ + ED+PKTAF TQ
Sbjct: 476 RIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTQ 517
>UniRef100_Q9AVM7 Reverse transcriptase [Chrysanthemum x morifolium]
Length = 143
Score = 54.3 bits (129), Expect = 2e-06
Identities = 25/42 (59%), Positives = 32/42 (75%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L G+ V SKI+ RS YH ++ + ED+PKTAFRT+
Sbjct: 22 RIDDLFDQLQGSSVYSKIDLRSGYHQLRVREEDIPKTAFRTR 63
>UniRef100_Q8S669 Putative polyprotein [Oryza sativa]
Length = 1680
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 815 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 856
>UniRef100_Q8S644 Putative polyprotein [Oryza sativa]
Length = 1722
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 857 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 898
>UniRef100_Q8LMV8 Putative polyprotein [Oryza sativa]
Length = 1406
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 541 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 582
>UniRef100_Q8LMA6 Putative retroelement [Oryza sativa]
Length = 1683
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 883 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 924
>UniRef100_Q8LM00 Putative retroelement [Oryza sativa]
Length = 1523
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 830 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 871
>UniRef100_Q8LLX9 Putative polyprotein [Oryza sativa]
Length = 1078
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 826 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 867
>UniRef100_Q8H870 Putative polyprotein [Oryza sativa]
Length = 1715
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 850 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 891
>UniRef100_Q8H832 Putative polyprotein [Oryza sativa]
Length = 1263
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 848 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 889
>UniRef100_Q7F9M3 OSJNBa0017P10.12 protein [Oryza sativa]
Length = 1742
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 877 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 918
>UniRef100_Q6UU96 Putative polyprotein [Oryza sativa]
Length = 1735
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 870 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 911
>UniRef100_Q6AU11 Putative retrotransposon protein, 5'-partial [Oryza sativa]
Length = 1633
Score = 54.3 bits (129), Expect = 2e-06
Identities = 26/42 (61%), Positives = 31/42 (72%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RIDDL D L GA V SKI+ RS YH ++ K ED+PKTAF T+
Sbjct: 445 RIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTR 486
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.365 0.164 0.594
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,581,574
Number of Sequences: 2790947
Number of extensions: 6933212
Number of successful extensions: 30003
Number of sequences better than 10.0: 780
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 28806
Number of HSP's gapped (non-prelim): 1204
length of query: 191
length of database: 848,049,833
effective HSP length: 120
effective length of query: 71
effective length of database: 513,136,193
effective search space: 36432669703
effective search space used: 36432669703
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 71 (32.0 bits)
Medicago: description of AC146588.1