BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.10 + phase: 2 /partial
(83 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 51 6e-06
UniRef100_Q64M76 Phosphoribosyl pyrophosphate synthase-like [Ory... 47 9e-05
UniRef100_Q7XET4 Contains similarity to non-LTR reverse transcri... 46 2e-04
UniRef100_Q8H992 Oryza sativa (japonica cultivar-group) retrotra... 45 3e-04
UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sa... 45 3e-04
UniRef100_Q6I5S8 Putative polyprotein [Oryza sativa] 45 4e-04
UniRef100_Q5ZD87 HcrVf2 protein-like [Oryza sativa] 44 0.001
UniRef100_Q6L3X8 Hypothetical protein [Solanum demissum] 44 0.001
UniRef100_Q5W642 Retrotransposon protein, putative, unclassified... 44 0.001
UniRef100_Q9XEU4 Putative reverse transcriptase [Oryza sativa] 41 0.006
UniRef100_Q9FYJ4 F17F8.5 [Arabidopsis thaliana] 40 0.011
UniRef100_Q6AUJ7 Hypothetical protein OSJNBa0052E20.4 [Oryza sat... 40 0.014
UniRef100_Q8S0M4 B1078G07.7 protein [Oryza sativa] 40 0.014
UniRef100_Q7XMF6 OSJNBa0061G20.3 protein [Oryza sativa] 40 0.019
UniRef100_Q5SMW3 Cyst nematode resistance protein-like [Oryza sa... 40 0.019
UniRef100_Q7XMS7 OSJNBa0029L02.10 protein [Oryza sativa] 40 0.019
UniRef100_Q9LR94 T23E23.16 [Arabidopsis thaliana] 39 0.032
UniRef100_Q5ZDG9 Hypothetical protein P0480E02.9 [Oryza sativa] 39 0.042
UniRef100_Q5WMS3 Hypothetical protein OJ1333_C12.8 [Oryza sativa] 39 0.042
UniRef100_Q851L3 Hypothetical protein OSJNBa0042I09.31 [Oryza sa... 39 0.042
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 51.2 bits (121), Expect = 6e-06
Identities = 26/60 (43%), Positives = 33/60 (54%), Gaps = 2/60 (3%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCPI 80
IW VPLK+ I W +N++ TK NL+ RG D + C VET QHLF CP+
Sbjct: 844 IWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGWRKGDNK--CQFCDKVETVQHLFFDCPL 901
>UniRef100_Q64M76 Phosphoribosyl pyrophosphate synthase-like [Oryza sativa]
Length = 183
Score = 47.4 bits (111), Expect = 9e-05
Identities = 25/62 (40%), Positives = 33/62 (52%), Gaps = 4/62 (6%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTL-APDAQLCVSGCWAVETAQHLFVS 77
+ +W P+KV AW L ++R P K NL + + AP +LC S A ETA HL
Sbjct: 8 KFVWENKAPMKVQFFAWLLTKDRFPIKRNLHKKTIVPAPTCELCNS---ADETALHLCFQ 64
Query: 78 CP 79
CP
Sbjct: 65 CP 66
>UniRef100_Q7XET4 Contains similarity to non-LTR reverse transcriptase [Oryza sativa]
Length = 379
Score = 46.2 bits (108), Expect = 2e-04
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
+ IW PLKV AW L+++RL TK NL + T+ P+ +C A ETA HL C
Sbjct: 264 DAIWKCKAPLKVKFFAWLLVKDRLSTKKNL-HKKTIVPN-DICDICNGATETASHLCFFC 321
Query: 79 P 79
P
Sbjct: 322 P 322
>UniRef100_Q8H992 Oryza sativa (japonica cultivar-group) retrotransposon Karma DNA,
complete sequence [Oryza sativa]
Length = 1197
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSC 78
+ IW +PLK+ + AW L+R+RL TK NL+ + + C ETA HL +C
Sbjct: 1034 KFIWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKKIV--QTATCDICSTTDETADHLSFNC 1091
Query: 79 P 79
P
Sbjct: 1092 P 1092
>UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sativa]
Length = 387
Score = 45.4 bits (106), Expect = 3e-04
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTL-APDAQLCVSGCWAVETAQHLFVSCP 79
IW P +V AW + +NRLPT+ NL + L P +LC + +E H+F+ CP
Sbjct: 229 IWRSAAPPRVKFFAWLMSKNRLPTRVNLHKKTILPTPTCELCNAN---LEDTYHIFLRCP 285
Query: 80 I 80
+
Sbjct: 286 M 286
>UniRef100_Q6I5S8 Putative polyprotein [Oryza sativa]
Length = 1419
Score = 45.1 bits (105), Expect = 4e-04
Identities = 24/62 (38%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+EL+W P K AW L +NR+ T +L RG P+ C +ET QHLF+
Sbjct: 284 TELVWETWAPGKHKFFAWLLAQNRIWTADHLQCRGW--PNNYFCQLCFRNLETVQHLFME 341
Query: 78 CP 79
CP
Sbjct: 342 CP 343
>UniRef100_Q5ZD87 HcrVf2 protein-like [Oryza sativa]
Length = 1064
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVAR--GTLAPDAQL 60
+ +WH PLK + AW L + RLPTK NL R G L P+ L
Sbjct: 823 KFVWHNKAPLKAQLFAWLLAKERLPTKHNLDVRQLGRLRPNGNL 866
>UniRef100_Q6L3X8 Hypothetical protein [Solanum demissum]
Length = 1155
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARG-TLAPDAQLCVSG--CWAVETAQHLFV 76
IWH+ +P K+S L W + NRLPT A G L+P C + +E+A+H+F+
Sbjct: 906 IWHKDIPFKMSFLTWKAIINRLPTGAKFKRLGIPLSPTCYCCTNNNIPTTLESAEHIFM 964
>UniRef100_Q5W642 Retrotransposon protein, putative, unclassified [Oryza sativa]
Length = 1090
Score = 43.5 bits (101), Expect = 0.001
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
++LIW P K AW L NR+ T L RG P+ C +ETAQHLF
Sbjct: 923 ADLIWKTWAPGKHKFFAWLLAHNRIWTADRLQCRGW--PNNYFCQLCFRNLETAQHLFKE 980
Query: 78 CP 79
CP
Sbjct: 981 CP 982
>UniRef100_Q9XEU4 Putative reverse transcriptase [Oryza sativa]
Length = 331
Score = 41.2 bits (95), Expect = 0.006
Identities = 21/64 (32%), Positives = 33/64 (50%), Gaps = 3/64 (4%)
Query: 20 LIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCP 79
LIW++ +P I W R+RL T AN V + D+ C A+ET+ H+ + C
Sbjct: 174 LIWNKAIPNTCRIFLWLAFRDRLNTNANRVLKKW---DSNPHCMTCPAIETSNHIILRCK 230
Query: 80 IFGD 83
+ G+
Sbjct: 231 LAGE 234
>UniRef100_Q9FYJ4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 40.4 bits (93), Expect = 0.011
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLV---ARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+W RH K ++ W + NRLPT ++ + G+++ + LC + +T +HLF S
Sbjct: 707 VWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNS---KTLEHLFFS 763
Query: 78 C 78
C
Sbjct: 764 C 764
>UniRef100_Q6AUJ7 Hypothetical protein OSJNBa0052E20.4 [Oryza sativa]
Length = 144
Score = 40.0 bits (92), Expect = 0.014
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 19 ELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTL-APDAQLCVSGCWAVETAQHLFVS 77
E IW P +V W + NRLPT NL + T+ + QLC + E H+F++
Sbjct: 11 EFIWKSSAPPRVKFFGWLMTMNRLPTAVNLHKKSTIPSLTCQLCNT---CPEDTDHIFLA 67
Query: 78 CPI 80
P+
Sbjct: 68 YPL 70
>UniRef100_Q8S0M4 B1078G07.7 protein [Oryza sativa]
Length = 325
Score = 40.0 bits (92), Expect = 0.014
Identities = 22/62 (35%), Positives = 25/62 (39%), Gaps = 2/62 (3%)
Query: 17 VSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFV 76
V ELIWH P K+ W + R T NL RG P + C E HLF
Sbjct: 135 VGELIWHTKAPAKIRFFMWLAAKGRCLTADNLQKRGW--PHSDCCNLCSRKPEDCTHLFT 192
Query: 77 SC 78
C
Sbjct: 193 KC 194
>UniRef100_Q7XMF6 OSJNBa0061G20.3 protein [Oryza sativa]
Length = 1463
Score = 39.7 bits (91), Expect = 0.019
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 14 DVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQH 73
D + LIW P K AW +L+NR+ T L R P+ C +E AQH
Sbjct: 1299 DSRAATLIWKTWAPSKCKKFAWLVLQNRIWTSDRLQLRQW--PNNYFCQLCYRNLEMAQH 1356
Query: 74 LFVSCP 79
LF CP
Sbjct: 1357 LFKDCP 1362
>UniRef100_Q5SMW3 Cyst nematode resistance protein-like [Oryza sativa]
Length = 185
Score = 39.7 bits (91), Expect = 0.019
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+ LIW P K AW +++NR+ T L RG P+ +C ETA HL +
Sbjct: 23 NRLIWKAWAPHKCKTFAWLIIQNRVWTSDKLATRGW--PNGSICPLCRRTQETALHLLAA 80
Query: 78 C 78
C
Sbjct: 81 C 81
>UniRef100_Q7XMS7 OSJNBa0029L02.10 protein [Oryza sativa]
Length = 389
Score = 39.7 bits (91), Expect = 0.019
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVSCPI 80
IW VPLK+ I W +N++ TK NL RG A C ET Q LF CP+
Sbjct: 125 IWGLKVPLKIKIFIWMFTKNKILTKDNLFKRGWRKGKAN--CQFCDQTETLQPLFY-CPL 181
>UniRef100_Q9LR94 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 38.9 bits (89), Expect = 0.032
Identities = 22/59 (37%), Positives = 29/59 (48%), Gaps = 4/59 (6%)
Query: 21 IWHRHVPLKVSILAWCLLRNRLPTKANLVA-RGTLAPDAQLCVSGCWAVETAQHLFVSC 78
IW H K S AW ++NRL T ++ L+P LC + +ET HLF SC
Sbjct: 490 IWFAHATPKFSFCAWLAVQNRLSTGDKMLQWNRRLSPTCVLCNNN---IETRNHLFFSC 545
>UniRef100_Q5ZDG9 Hypothetical protein P0480E02.9 [Oryza sativa]
Length = 385
Score = 38.5 bits (88), Expect = 0.042
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 18 SELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVETAQHLFVS 77
+ LIW P K AW +++NR+ T L RG P+ +C ETA HL
Sbjct: 228 NNLIWKPWAPHKCKTFAWLIIQNRVWTSNRLATRGW--PNGSICPLCRHRQETAIHLLAE 285
Query: 78 C 78
C
Sbjct: 286 C 286
>UniRef100_Q5WMS3 Hypothetical protein OJ1333_C12.8 [Oryza sativa]
Length = 244
Score = 38.5 bits (88), Expect = 0.042
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSGCWAVET 70
NN + ++LIW +PLK+ I W LL+ + TK NL AR + + C C ET
Sbjct: 62 NNGYIDRNKLIWKLKMPLKIKIFMWYLLKGVVLTKDNL-ARRNWTGNLRCCF--CTKNET 118
Query: 71 AQH 73
QH
Sbjct: 119 IQH 121
>UniRef100_Q851L3 Hypothetical protein OSJNBa0042I09.31 [Oryza sativa]
Length = 350
Score = 38.5 bits (88), Expect = 0.042
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 1 TGYDLLTADDNNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLV-ARGTLAPDAQ 59
T Y+LLT A +IW++ P I W R+RL T AN V + + P
Sbjct: 128 TNYNLLTYHGILWQPA--SIIWNKATPNTCRIFLWLAFRDRLNTNANRVHKKWAIDPHC- 184
Query: 60 LCVSGCWAVETAQHLFVSCPI 80
S C +ETA H+ + C +
Sbjct: 185 ---SSCPTIETANHIILHCKL 202
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.324 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,620,222
Number of Sequences: 2790947
Number of extensions: 4142030
Number of successful extensions: 12505
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 12459
Number of HSP's gapped (non-prelim): 83
length of query: 83
length of database: 848,049,833
effective HSP length: 59
effective length of query: 24
effective length of database: 683,383,960
effective search space: 16401215040
effective search space used: 16401215040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146554.10