BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146527.10 - phase: 0 /pseudo
(129 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa] 48 4e-05
UniRef100_Q6L3U7 Putative RNase H domain containing protein [Sol... 46 2e-04
UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa] 46 2e-04
UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa] 46 2e-04
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 46 2e-04
UniRef100_Q75HL0 Putative reverse transcriptase [Oryza sativa] 45 3e-04
UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa] 45 5e-04
UniRef100_Q5W741 Hypothetical protein OJ1005_D04.5 [Oryza sativa] 44 6e-04
UniRef100_Q8LMV3 Putative reverse transcriptase [Oryza sativa] 44 8e-04
UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa] 41 0.007
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip... 41 0.007
UniRef100_Q6UUN4 Putative reverse transcriptase [Oryza sativa] 41 0.007
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 40 0.009
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 40 0.009
UniRef100_Q7XUE8 OJ991113_30.21 protein [Oryza sativa] 40 0.012
UniRef100_Q7XLJ7 OSJNBa0009K15.13 protein [Oryza sativa] 40 0.015
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip... 39 0.034
UniRef100_Q9LNB4 F5O11.4 [Arabidopsis thaliana] 38 0.045
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 38 0.058
UniRef100_Q9C7N6 Reverse transcriptase, putative; 100033-105622 ... 38 0.058
>UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]
Length = 1205
Score = 48.1 bits (113), Expect = 4e-05
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGS-S 59
+++S + L +L KY + S SSPTW I+ +LK+G WRIG GS +
Sbjct: 861 LIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKT 920
Query: 60 SFWFSNWNSLG 70
W ++W + G
Sbjct: 921 KIWRNHWVAHG 931
>UniRef100_Q6L3U7 Putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 45.8 bits (107), Expect = 2e-04
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 8 LWVSLLSNK--YTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSN 65
LW SL + K Y + + + SS S TWS +++ ++ ++ W I +G+ S W+ N
Sbjct: 36 LWASLEATKRIYCSRVHPVAKAKSSKQSHTWSKMLKIRHSVENNILWIIYAGNVSMWWDN 95
Query: 66 WNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHI 119
W G + + +P H +V+D + L LP V N I +I I
Sbjct: 96 WMGNGALSNILP-PPSHYNKDNVKDFIHKREWDFDKLSDILPPQVVNQIVSIPI 148
>UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]
Length = 1936
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
+++ N L +L KY + + S+N+SPTW I ++LK+G WRIG+G+S
Sbjct: 1513 LIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSV 1572
Query: 60 SFWFSNW 66
W W
Sbjct: 1573 RIWRDPW 1579
>UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]
Length = 1711
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
+++ N L +L KY + + S+N+SPTW I ++LK+G WRIG+G+S
Sbjct: 1357 LIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSV 1416
Query: 60 SFWFSNW 66
W W
Sbjct: 1417 RIWRDPW 1423
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + L +L KY + + S SNSSP W SI ++LK+G WR+G+G+S
Sbjct: 1607 LITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSI 1666
Query: 60 SFWFSNW 66
W +W
Sbjct: 1667 RIWRDSW 1673
>UniRef100_Q75HL0 Putative reverse transcriptase [Oryza sativa]
Length = 256
Score = 45.4 bits (106), Expect = 3e-04
Identities = 24/62 (38%), Positives = 32/62 (50%), Gaps = 1/62 (1%)
Query: 6 NKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFWFS 64
+ L +L KY N L + S SSPTW +I +LKEG WRIG+G++ W
Sbjct: 3 DSLCARILKAKYYPHGNLLDTAFPSVSSPTWKAIEHGLQLLKEGVIWRIGNGTNIKIWRH 62
Query: 65 NW 66
W
Sbjct: 63 RW 64
>UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]
Length = 791
Score = 44.7 bits (104), Expect = 5e-04
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + L +L KY + + S SNSSP W SI ++LK+G WR+G+G+S
Sbjct: 283 LITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSI 342
Query: 60 SFWFSNW 66
W W
Sbjct: 343 RIWRDPW 349
>UniRef100_Q5W741 Hypothetical protein OJ1005_D04.5 [Oryza sativa]
Length = 697
Score = 44.3 bits (103), Expect = 6e-04
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGS-GSS 59
++ N L LL KY + + SN+SPTW I +LK+G WRIG ++
Sbjct: 307 LIAEPNSLCARLLKAKYYPNGSLTDTAFPSNTSPTWKGIEHGLELLKKGLIWRIGDRRTT 366
Query: 60 SFWFSNWNSLG 70
W + W + G
Sbjct: 367 KIWRNRWVAHG 377
>UniRef100_Q8LMV3 Putative reverse transcriptase [Oryza sativa]
Length = 566
Score = 43.9 bits (102), Expect = 8e-04
Identities = 21/67 (31%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q+ + L LL KY N L A + S +W SI++ +L++G WR+G+G
Sbjct: 263 LIQNPDSLCSRLLKAKYFPNCNVLDAQSRKQMSYSWRSILKGIQLLRKGVIWRVGNGEHI 322
Query: 60 SFWFSNW 66
+ W W
Sbjct: 323 NIWSDPW 329
>UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]
Length = 1557
Score = 40.8 bits (94), Expect = 0.007
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ + + L +L KY + + S N+SP W +I ++K+G WRIG+G S
Sbjct: 1242 LIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSV 1301
Query: 60 SFWFSNW 66
W W
Sbjct: 1302 RVWQDPW 1308
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 40.8 bits (94), Expect = 0.007
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++ S L +L KY + + S S W SII + ILKEG W I +G
Sbjct: 768 LLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKV 827
Query: 60 SFWFSNWNSLG-PIGSYVPIIDIH-DLHLSV---RDVLSAPGNHTQVLYTNLPSAVE 111
S W W S+ P+ P + H DL +S ++ L N V+ N + ++
Sbjct: 828 SIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPNYENLIK 884
>UniRef100_Q6UUN4 Putative reverse transcriptase [Oryza sativa]
Length = 284
Score = 40.8 bits (94), Expect = 0.007
Identities = 21/61 (34%), Positives = 30/61 (48%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSS 60
++Q + L LL KY + A +SS TW S+ +LK+G WRIG G+
Sbjct: 93 LIQFPDSLCARLLKAKYFPNSELIDAVFLGDSSVTWKSLEYGLQLLKKGLIWRIGDGTKK 152
Query: 61 F 61
F
Sbjct: 153 F 153
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 40.4 bits (93), Expect = 0.009
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q L + KY L A A+S SS W SI+ ++ G + G+G++
Sbjct: 328 ILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNI 387
Query: 60 SFWFSNWNSLGPIGSYVPIIDIHDLHLSVRDVL 92
W NW L P V D L V D+L
Sbjct: 388 QLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLL 420
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 40.4 bits (93), Expect = 0.009
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q + L +L KY + +SN S TW SI + +L+ G WR+G GS
Sbjct: 1074 LIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKI 1133
Query: 60 SFWFSNW 66
+ W W
Sbjct: 1134 NIWADPW 1140
>UniRef100_Q7XUE8 OJ991113_30.21 protein [Oryza sativa]
Length = 541
Score = 40.0 bits (92), Expect = 0.012
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS- 59
++Q + L +L KY + A ++ SPTW ++ +LK+G WRIG G
Sbjct: 24 LIQYHDSLCARILKAKYYPNCELIDAVFPADVSPTWKAVEHGLELLKKGLIWRIGDGRKV 83
Query: 60 SFWFSNW 66
W W
Sbjct: 84 RIWKDQW 90
>UniRef100_Q7XLJ7 OSJNBa0009K15.13 protein [Oryza sativa]
Length = 779
Score = 39.7 bits (91), Expect = 0.015
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
Query: 11 SLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFWFSNWNSL 69
+LL KY G S+ S W S++ KN +K G + IG+G + FW W
Sbjct: 530 NLLRKKYLGQGGGFFQSSPEGGSQFWKSLLEVKNWMKLGSAYNIGNGEAVRFWDDVWLGE 589
Query: 70 GPIGSYVPII 79
P+ P I
Sbjct: 590 VPLKIQFPYI 599
>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 38.5 bits (88), Expect = 0.034
Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 1/93 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGS-S 59
+++ N L +L +Y + + ++ S W SI+ AK +L G IGSG +
Sbjct: 753 LIRFPNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLT 812
Query: 60 SFWFSNWNSLGPIGSYVPIIDIHDLHLSVRDVL 92
W W P I++I D HL V D++
Sbjct: 813 RVWEDPWIPSFPPRPAKSILNIRDTHLYVNDLI 845
>UniRef100_Q9LNB4 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 38.1 bits (87), Expect = 0.045
Identities = 23/84 (27%), Positives = 42/84 (49%), Gaps = 11/84 (13%)
Query: 4 STNKLWVSLLS----NKYTGGHNTLLASASSNS------SPTWSSIIRAKNILKEGYTWR 53
ST K+ + +LS N ++ HN +++ N S W ++R + + + +
Sbjct: 712 STIKMVIDMLSDDKANYFSKYHNCSKSTSFWNQPEKPSDSWNWKCLLRLRCLAENFVRCK 771
Query: 54 IGSG-SSSFWFSNWNSLGPIGSYV 76
IG G ++SFWF NW GP+ ++
Sbjct: 772 IGDGKTASFWFDNWTPFGPLIKFI 795
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 37.7 bits (86), Expect = 0.058
Identities = 27/95 (28%), Positives = 44/95 (45%), Gaps = 13/95 (13%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASAS-SNSSPTWSSIIRAKNILKEGYTWRIGSGSS 59
+++ + L +L KY + + SAS S +S W I+ +++L++G W IG G S
Sbjct: 807 ILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDS 866
Query: 60 -SFWFSNWNSLGPIGSYVPI---------IDIHDL 84
+ W W L P PI + +HDL
Sbjct: 867 INVWTEAW--LSPSSPQTPIGPPTETNKDLSVHDL 899
>UniRef100_Q9C7N6 Reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
Length = 1557
Score = 37.7 bits (86), Expect = 0.058
Identities = 27/97 (27%), Positives = 47/97 (47%), Gaps = 12/97 (12%)
Query: 9 WVSLLSNKYTGGH-----NTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSS-SFW 62
W + +K GG + L A + S W S++ +++L +G IG+G+S S W
Sbjct: 1150 WEKMCLSKENGGRYFPDEDFLEADLGARPSYAWRSVLHGRDLLTKGLRKEIGNGNSISVW 1209
Query: 63 FSNWNSLGPIGSYVPIIDIH---DLHLSVRDVLSAPG 96
NW + G +P + H L+L V+D+++ G
Sbjct: 1210 MDNW--IYDNGPRIP-LQKHFSVSLNLRVKDLINLDG 1243
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.314 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,259,402
Number of Sequences: 2790947
Number of extensions: 9941241
Number of successful extensions: 21846
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 21801
Number of HSP's gapped (non-prelim): 112
length of query: 129
length of database: 848,049,833
effective HSP length: 105
effective length of query: 24
effective length of database: 555,000,398
effective search space: 13320009552
effective search space used: 13320009552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146527.10