BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.5 + phase: 0 /pseudo
(141 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q40369 RPE15 protein [Medicago sativa] 78 4e-14
UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum] 41 0.005
UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum] 41 0.005
UniRef100_O96668 Cell surface protein DTFA [Dictyostelium discoi... 38 0.055
UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum] 37 0.12
UniRef100_Q6IG93 HDC06910 [Drosophila melanogaster] 37 0.12
UniRef100_Q8MMQ3 Similar to Dictyostelium discoideum (Slime mold... 36 0.16
UniRef100_O15816 Myb2 protein [Dictyostelium discoideum] 36 0.16
UniRef100_Q622G4 Hypothetical protein CBG02207 [Caenorhabditis b... 36 0.21
UniRef100_UPI000042D584 UPI000042D584 UniRef100 entry 35 0.27
UniRef100_Q9V6J0 CG3905-PA [Drosophila melanogaster] 35 0.27
UniRef100_Q6CDL6 Similar to sp|P09230 Yarrowia lipolytica Alkali... 35 0.35
UniRef100_Q41531 Alpha-gliadin storage protein [Triticum aestivum] 35 0.46
UniRef100_Q9NDJ2 Helicase DOMINO A [Drosophila melanogaster] 35 0.46
UniRef100_Q7SAT8 Hypothetical protein [Neurospora crassa] 35 0.46
UniRef100_UPI000007FB6D UPI000007FB6D UniRef100 entry 34 0.60
UniRef100_UPI00003189DF UPI00003189DF UniRef100 entry 34 0.60
UniRef100_Q61WJ5 Hypothetical protein CBG04380 [Caenorhabditis b... 34 0.60
UniRef100_Q96DJ3 Small-conductance calcium-activated potassium c... 34 0.60
UniRef100_Q6JXY2 Small-conductance calcium-activated potassium c... 34 0.60
>UniRef100_Q40369 RPE15 protein [Medicago sativa]
Length = 219
Score = 78.2 bits (191), Expect = 4e-14
Identities = 40/62 (64%), Positives = 45/62 (72%), Gaps = 4/62 (6%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT----FPLIPMLYAKLLPTLLLKGQA 56
PLP GQP VPVNA+ Q++Q QPPAQQ+QQQQ P FP IPM YA+LLPTLL KG
Sbjct: 136 PLPPGQPPVPVNAMAQQVQHQPPAQQQQQQQQGPRPKTYFPPIPMRYAELLPTLLAKGHC 195
Query: 57 ST 58
T
Sbjct: 196 VT 197
>UniRef100_Q6WAY7 Gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 41.2 bits (95), Expect = 0.005
Identities = 29/77 (37%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*S 60
P P Q Q V Q+ QQQ P Q RQ+ R F +PM YA+LLP LL G +
Sbjct: 380 PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDR-RFDSLPMSYAELLPELLRLGMVELRT 438
Query: 61 IASQVPFGPQV*FPSRC 77
+A P RC
Sbjct: 439 MAPPTVLPPGYDANVRC 455
>UniRef100_Q6WAY5 Gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 41.2 bits (95), Expect = 0.005
Identities = 29/77 (37%), Positives = 35/77 (44%), Gaps = 1/77 (1%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*S 60
P P Q Q V Q+ QQQ P Q RQ+ R F +PM YA+LLP LL G +
Sbjct: 380 PQPRQQQQQRVQQPQQQQQQQRPYQPRQRMPDR-RFDSLPMSYAELLPELLRLGMVELRT 438
Query: 61 IASQVPFGPQV*FPSRC 77
+A P RC
Sbjct: 439 MAPPTVLPPGYDANVRC 455
>UniRef100_O96668 Cell surface protein DTFA [Dictyostelium discoideum]
Length = 1402
Score = 37.7 bits (86), Expect = 0.055
Identities = 15/35 (42%), Positives = 23/35 (64%)
Query: 14 VVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLP 48
+ Q+ +Q PP QQ+QQQ P PL+P ++ +L P
Sbjct: 229 IQQKSKQPPPQQQQQQQPPPPPIPLLPQIHQQLKP 263
>UniRef100_Q6WAY3 Gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 36.6 bits (83), Expect = 0.12
Identities = 26/78 (33%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT--FPLIPMLYAKLLPTLLLKGQAST* 59
+P+ QP+ VQ+ QQQ + Q +Q P F +PM YA+LLP LL G
Sbjct: 376 IPAPQPRQQQQQRVQQPQQQQQQRPYQPRQRMPDRRFDSLPMSYAELLPELLRLGLVELC 435
Query: 60 SIASQVPFGPQV*FPSRC 77
++A P RC
Sbjct: 436 TMAPPTVLPPGYDANVRC 453
>UniRef100_Q6IG93 HDC06910 [Drosophila melanogaster]
Length = 682
Score = 36.6 bits (83), Expect = 0.12
Identities = 16/26 (61%), Positives = 19/26 (72%)
Query: 6 QPQVPVNAVVQRMQQQPPAQQRQQQQ 31
QP VPV+ + QQQPP QQ+QQQQ
Sbjct: 47 QPYVPVSCEYPQQQQQPPPQQQQQQQ 72
>UniRef100_Q8MMQ3 Similar to Dictyostelium discoideum (Slime mold). Myb2 protein
[Dictyostelium discoideum]
Length = 682
Score = 36.2 bits (82), Expect = 0.16
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT----FPLIPMLYAKLLPTLLLKGQAST* 59
+ QPQ P ++ Q+ QQQ QQ+QQQQ + IP + L+
Sbjct: 19 NAQPQQPQQSLQQQQQQQQQQQQQQQQQQQQQQHHHHQNIPPTPQPIFSPQLINKNFGCY 78
Query: 60 SIASQVPFGPQV*FPSRCY 78
++Q+P PQ FP + +
Sbjct: 79 GTSNQIPMIPQALFPQQTF 97
>UniRef100_O15816 Myb2 protein [Dictyostelium discoideum]
Length = 699
Score = 36.2 bits (82), Expect = 0.16
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 4 SGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT------FPLIPMLYAKLLPTLLLKGQAS 57
+ QPQ P ++ Q+ QQQ QQ+QQQQ + IP + L+
Sbjct: 19 NAQPQQPQQSIQQQQQQQQQQQQQQQQQQQQQQQQHHHHQNIPPTPQPIFSPQLINKNFG 78
Query: 58 T*SIASQVPFGPQV*FPSRCY 78
++Q+P PQ FP + +
Sbjct: 79 CYGTSNQIPMIPQALFPQQTF 99
>UniRef100_Q622G4 Hypothetical protein CBG02207 [Caenorhabditis briggsae]
Length = 651
Score = 35.8 bits (81), Expect = 0.21
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 5 GQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
G P+VP V Q+ Q+PP QQ QQQQ RP
Sbjct: 513 GPPRVPNAGVQQQNVQRPPPQQLQQQQQRP 542
>UniRef100_UPI000042D584 UPI000042D584 UniRef100 entry
Length = 625
Score = 35.4 bits (80), Expect = 0.27
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 1 PLPSGQP--QVPVNAVVQRMQQQPPAQQRQQQQARPTF 36
P+PS Q Q P A VQ+ QQQ QQ+QQQQ +P +
Sbjct: 447 PVPSHQAAQQSPAAAPVQQQQQQQQQQQQQQQQQQPQY 484
Score = 31.6 bits (70), Expect = 3.9
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQAR 33
P PS QPQ P +Q Q PP Q R QQQ +
Sbjct: 534 PAPSTQPQAPAQTPIQ--GQIPPTQPRAQQQGQ 564
>UniRef100_Q9V6J0 CG3905-PA [Drosophila melanogaster]
Length = 1368
Score = 35.4 bits (80), Expect = 0.27
Identities = 17/49 (34%), Positives = 26/49 (52%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPT 49
P P+ +P+ Q+ Q Q QQ+QQQQ + F ++P + LPT
Sbjct: 595 PTPTAEPEQQQQQQQQQQQPQQQQQQQQQQQQQQQFVVLPKIKDLTLPT 643
>UniRef100_Q6CDL6 Similar to sp|P09230 Yarrowia lipolytica Alkaline extracellular
protease [Yarrowia lipolytica]
Length = 539
Score = 35.0 bits (79), Expect = 0.35
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
P P QP+ P Q+ QQQP QQR+ Q RP
Sbjct: 176 PQPKAQPKPPPKQQQQQQQQQPRPQQRRPQPGRP 209
>UniRef100_Q41531 Alpha-gliadin storage protein [Triticum aestivum]
Length = 289
Score = 34.7 bits (78), Expect = 0.46
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 1 PLPSGQPQV--PVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTL 50
P P QPQ P + Q+ QQQ QQ+QQQQ + L +L +L+P +
Sbjct: 99 PYPQPQPQYSQPQQPISQQQQQQQQQQQQQQQQQQQQQILQQILQQQLIPCM 150
>UniRef100_Q9NDJ2 Helicase DOMINO A [Drosophila melanogaster]
Length = 3201
Score = 34.7 bits (78), Expect = 0.46
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 6 QPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIP 40
QP V V VVQ+MQQQ QQ+ QQQ +P P +P
Sbjct: 2329 QPPVGVG-VVQQMQQQSQQQQQSQQQQQPAPPPLP 2362
>UniRef100_Q7SAT8 Hypothetical protein [Neurospora crassa]
Length = 1533
Score = 34.7 bits (78), Expect = 0.46
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPT 35
P +G P VP A+ Q+ QQQ QQ+QQQQ +P+
Sbjct: 132 PFQTGMPPVP--AIPQQFQQQQSFQQQQQQQQQPS 164
>UniRef100_UPI000007FB6D UPI000007FB6D UniRef100 entry
Length = 1267
Score = 34.3 bits (77), Expect = 0.60
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 2 LPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFP-LIPMLYAKLLPTLLLKGQAST*S 60
LP Q ++ QQQP Q+QQQQ +P P L +++ +P QA+T S
Sbjct: 717 LPQQPQQQQTQYILATPQQQPQQIQQQQQQQQPILPTLTSFSHSRPMPQTTTLYQATTPS 776
Query: 61 IASQVP 66
+ Q P
Sbjct: 777 GSGQTP 782
>UniRef100_UPI00003189DF UPI00003189DF UniRef100 entry
Length = 751
Score = 34.3 bits (77), Expect = 0.60
Identities = 23/64 (35%), Positives = 29/64 (44%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST*S 60
P QPQ P Q+ QQQPP Q+QQ Q P P P P+ + Q S+ +
Sbjct: 504 PQQPQQPQQPQPQQQQQQQQQPPPPQQQQPQPPPQQPPPPQQQQPQQPSYPGQPQGSSGT 563
Query: 61 IASQ 64
SQ
Sbjct: 564 SYSQ 567
Score = 30.4 bits (67), Expect = 8.7
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 6/37 (16%)
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFP 37
P GQPQ P + QQP QQ+QQQQ +P P
Sbjct: 498 PPHPGQPQQP------QQPQQPQPQQQQQQQQQPPPP 528
>UniRef100_Q61WJ5 Hypothetical protein CBG04380 [Caenorhabditis briggsae]
Length = 1427
Score = 34.3 bits (77), Expect = 0.60
Identities = 23/55 (41%), Positives = 27/55 (48%), Gaps = 8/55 (14%)
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAS 57
PS QP +P Q QQQ QQ+QQ QA P FP P PT + Q+S
Sbjct: 1258 PSIQPTMPAVQNQQHFQQQQQ-QQQQQSQAPPPFPQAP-------PTQIASNQSS 1304
>UniRef100_Q96DJ3 Small-conductance calcium-activated potassium channel SK3 [Homo
sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.60
Identities = 19/36 (52%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPL 38
PS QPQ P Q+ QQQ QQ+QQQQ +P PL
Sbjct: 57 PSLQPQPP-QLQQQQQQQQQQQQQQQQQQQQPPHPL 91
>UniRef100_Q6JXY2 Small-conductance calcium-activated potassium channel SK3 [Homo
sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.60
Identities = 19/36 (52%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPL 38
PS QPQ P Q+ QQQ QQ+QQQQ +P PL
Sbjct: 57 PSLQPQPP-QLQQQQQQQQQQQQQQQQQQQQPPHPL 91
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.352 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,338,174
Number of Sequences: 2790947
Number of extensions: 6235416
Number of successful extensions: 102399
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 99054
Number of HSP's gapped (non-prelim): 1674
length of query: 141
length of database: 848,049,833
effective HSP length: 117
effective length of query: 24
effective length of database: 521,509,034
effective search space: 12516216816
effective search space used: 12516216816
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC145220.5