BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144728.11 + phase: 0 /pseudo
(438 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_O64712 Putative reverse transcriptase [Arabidopsis tha... 47 8e-04
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 47 0.001
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 47 0.001
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip... 46 0.002
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 46 0.002
UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa] 45 0.005
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 44 0.007
UniRef100_Q9ZVH1 T2P11.5 protein [Arabidopsis thaliana] 44 0.012
UniRef100_Q9SXN3 SAE1-S9-protein [Brassica campestris] 44 0.012
UniRef100_O22220 Putative non-LTR retroelement reverse transcrip... 42 0.027
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 42 0.027
UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa] 42 0.027
UniRef100_Q93VN3 P0487H02.8 protein [Oryza sativa] 42 0.045
UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor] 42 0.045
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 41 0.059
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr... 41 0.059
UniRef100_Q6ZIA0 Cyst nematode resistance protein-like [Oryza sa... 41 0.077
UniRef100_Q9LVT7 Similarity to non-LTR retroelement reverse tran... 40 0.10
UniRef100_Q6H671 Hypothetical protein OJ1112_F09.38 [Oryza sativa] 40 0.13
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 40 0.13
>UniRef100_O64712 Putative reverse transcriptase [Arabidopsis thaliana]
Length = 365
Score = 47.4 bits (111), Expect = 8e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 316 CVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGM 367
CV G L T L+ + + C C E E ++H+MF CP++ VW SA +
Sbjct: 53 CVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANI 104
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 47.0 bits (110), Expect = 0.001
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
++ P KL + GC+P L+ +G+ C C SC E +NH +F+C + Q+W
Sbjct: 831 VQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 46.6 bits (109), Expect = 0.001
Identities = 18/44 (40%), Positives = 25/44 (55%)
Query: 319 GCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
G L L+ +G+ C C E E +NHL+F+CPF+ QVW
Sbjct: 1017 GALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVW 1060
>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 45.8 bits (107), Expect = 0.002
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
+++ RK C+ GCL T L + + C C E E +NHL+F CP S Q+W
Sbjct: 929 IKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIW 988
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 45.8 bits (107), Expect = 0.002
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 319 GCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
G +P L+ +G+ C C E E +NH++FECP + QVW
Sbjct: 1043 GAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVW 1086
>UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa]
Length = 1185
Score = 44.7 bits (104), Expect = 0.005
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 290 TSIVRVIGETFGALRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLN 349
+S R + + L P K+ + G +P + +L DK ++ C CS ED+
Sbjct: 853 SSSSRPVWDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSGVEDIK 912
Query: 350 HLMFECPFSIQVWMSAGMW 368
H++F C + +W G+W
Sbjct: 913 HMVFTCRRAKLIWKQLGIW 931
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 44.3 bits (103), Expect = 0.007
Identities = 16/46 (34%), Positives = 26/46 (55%)
Query: 317 VGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
+ LPTR L +G+ +C C E E +NH++F CP++ +W
Sbjct: 1379 ISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIW 1424
>UniRef100_Q9ZVH1 T2P11.5 protein [Arabidopsis thaliana]
Length = 240
Score = 43.5 bits (101), Expect = 0.012
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 293 VRVIGETFGALRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLM 352
++V+ ++ P KL + GC+P L+ +G++C C+ C E +NH +
Sbjct: 11 IKVLKAFSWKVQCPPKLYHFLWQILAGCVPITDNLRKRGINCEIGCSRCGALEETINHTL 70
Query: 353 FECPFSIQVW----MSAGMWYMCK 372
F C + Q+W + +WY+ K
Sbjct: 71 FLCHPARQIWALSQIPTIIWYIWK 94
>UniRef100_Q9SXN3 SAE1-S9-protein [Brassica campestris]
Length = 255
Score = 43.5 bits (101), Expect = 0.012
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGMWYMCKMRP*IRTL 380
LPTR L G++ P +C C+ E +HL FEC F++ VW+ M P ++T+
Sbjct: 153 LPTRDRLISWGLTVPNSCVLCNGGVESHSHLFFECSFAVGVWLHFCGRSMTSPPPDLQTV 212
Query: 381 LSTQFSIYSK---TRLWIFNHLLLLFVGVYG 408
++ ++ + + + LL + V ++G
Sbjct: 213 VAYCQQLHGPLMVSTMKVMKLLLQVIVTIFG 243
>UniRef100_O22220 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 42.4 bits (98), Expect = 0.027
Identities = 19/60 (31%), Positives = 30/60 (49%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L S K+ + G + L+ +GV C+ C + E LNH++F+CP + QVW
Sbjct: 778 LNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVW 837
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 42.4 bits (98), Expect = 0.027
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 316 CVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSA 365
C+ G L T L+++ + C C + E +NH++F C ++ VW SA
Sbjct: 1404 CLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSA 1453
>UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa]
Length = 3331
Score = 42.4 bits (98), Expect = 0.027
Identities = 23/68 (33%), Positives = 34/68 (49%), Gaps = 13/68 (19%)
Query: 296 IGETFGALRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFEC 355
+G+ GAL PR C T LLQ +G+ + C C+ E E NH++ +C
Sbjct: 1530 VGDIRGALTVPR------------CW-TADLLQKRGIDSHSACPFCAQELETANHILIDC 1576
Query: 356 PFSIQVWM 363
F+ QVW+
Sbjct: 1577 VFARQVWL 1584
>UniRef100_Q93VN3 P0487H02.8 protein [Oryza sativa]
Length = 297
Score = 41.6 bits (96), Expect = 0.045
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 323 TRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWM 363
T LLQ +G+ + C C+ E E NH++ +C F+ QVW+
Sbjct: 230 TADLLQKRGIDSHSACPFCAQELETANHILIDCVFARQVWL 270
>UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor]
Length = 1323
Score = 41.6 bits (96), Expect = 0.045
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 338 CASCSHEYEDLNHLMFECPFSIQVWMSAGMWYMC 371
CA C E +HL FECP+S VW + W C
Sbjct: 1201 CALCERNLETAHHLFFECPYSRLVWQAVSSWSSC 1234
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 41.2 bits (95), Expect = 0.059
Identities = 16/42 (38%), Positives = 21/42 (49%)
Query: 321 LPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
LPT L +G+ C C E E +NH +F CPF+ W
Sbjct: 688 LPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAW 729
>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 41.2 bits (95), Expect = 0.059
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 303 LRSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
L++ K+ + G +P LL +G+ + C +C E E + H++F C F QVW
Sbjct: 897 LQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVW 956
>UniRef100_Q6ZIA0 Cyst nematode resistance protein-like [Oryza sativa]
Length = 158
Score = 40.8 bits (94), Expect = 0.077
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 304 RSPRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW- 362
R+P ++ + G T LQ +G +C C+ E E NHL+ +CP + +VW
Sbjct: 51 RAPSRIKFFMWLATKGRCLTADNLQKRGWPHDASCGLCNAEMESCNHLLMKCPLTNRVWR 110
Query: 363 MSAGMWYMCKMR 374
M W++ K R
Sbjct: 111 MLMVCWFIWKER 122
>UniRef100_Q9LVT7 Similarity to non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana]
Length = 329
Score = 40.4 bits (93), Expect = 0.10
Identities = 18/48 (37%), Positives = 26/48 (53%)
Query: 320 CLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWMSAGM 367
CL T L + + C C + E +NHL+FECP + QVW +G+
Sbjct: 33 CLATCQRLYFRHIGRDKKCPRCGADEETINHLIFECPPARQVWALSGI 80
>UniRef100_Q6H671 Hypothetical protein OJ1112_F09.38 [Oryza sativa]
Length = 60
Score = 40.0 bits (92), Expect = 0.13
Identities = 15/38 (39%), Positives = 24/38 (62%)
Query: 326 LLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVWM 363
LLQ +G+ C+ C+ E E NH++ +C F+ QVW+
Sbjct: 4 LLQKRGIDSHPVCSFCAQELEMTNHILLDCVFAWQVWL 41
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 40.0 bits (92), Expect = 0.13
Identities = 18/57 (31%), Positives = 28/57 (48%)
Query: 306 PRKLNT*FGVCVGGCLPTRVLLQDKGVSCPTNCASCSHEYEDLNHLMFECPFSIQVW 362
P K++ CV CL L + ++ +C C E +NHL+F+CPF+ W
Sbjct: 1060 PPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTW 1116
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.359 0.163 0.562
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,020,719
Number of Sequences: 2790947
Number of extensions: 19519861
Number of successful extensions: 79815
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 79744
Number of HSP's gapped (non-prelim): 78
length of query: 438
length of database: 848,049,833
effective HSP length: 130
effective length of query: 308
effective length of database: 485,226,723
effective search space: 149449830684
effective search space used: 149449830684
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 76 (33.9 bits)
Medicago: description of AC144728.11