BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144726.11 + phase: 0
(515 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8L6K2 Phage-type RNA polymerase [Nicotiana tabacum] 518 e-145
UniRef100_Q93Y94 DNA-directed RNA polymerase 1, mitochondrial pr... 516 e-145
UniRef100_Q84LK6 RpoT1 [Oryza sativa] 489 e-137
UniRef100_Q6K326 Putative phage-type RNA polymerase [Oryza sativa] 489 e-137
UniRef100_Q8L6J7 Mitochondrial and chloroplast RNA polymerase [N... 488 e-136
UniRef100_Q9XF15 T7-like RNA polymerase [Zea mays] 488 e-136
UniRef100_Q8VWF8 DNA-directed RNA polymerase 2, chloroplast/mito... 487 e-136
UniRef100_P93661 Mitochondrial single-subunit DNA-dependent RNA ... 486 e-136
UniRef100_Q9MQV1 Single-subunit RNA polymerase G [Triticum aesti... 482 e-134
UniRef100_P92969 DNA-directed RNA polymerase, mitochondrial prec... 476 e-133
UniRef100_Q70BU3 RNA polymerase [Hordeum vulgare] 475 e-132
UniRef100_O23644 DNA-directed RNA polymerase precursor [Arabidop... 434 e-120
UniRef100_Q9LFV6 DNA-directed RNA polymerase [Arabidopsis thaliana] 432 e-120
UniRef100_Q8L6J6 Chloroplast RNA polymerase [Nicotiana tabacum] 374 e-102
UniRef100_Q8L4F8 DNA-directed RNA polymerase 3, chloroplast prec... 374 e-102
UniRef100_Q84LK5 T3/T7-like RNA polymerase [Oryza sativa] 372 e-101
UniRef100_Q70XR1 DNA-directed RNA polymerase, chloroplast [Horde... 371 e-101
UniRef100_Q70XR0 DNA-directed RNA polymerase, chloroplast [Horde... 371 e-101
UniRef100_Q9SYW4 T7-like RNA polymerase [Zea mays] 369 e-101
UniRef100_O82725 DNA directed RNA polymerase [Zea mays] 369 e-101
>UniRef100_Q8L6K2 Phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 518 bits (1334), Expect = e-145
Identities = 293/545 (53%), Positives = 366/545 (66%), Gaps = 62/545 (11%)
Query: 1 MWSKLAKRASSRRFILPSQSSTSLRFSHQHN----------FPEKILRHPFSRFSQVGIF 50
MW ++K A SR+F S S L FS + E+ HP SQ IF
Sbjct: 1 MWRYISKHAYSRKF-RNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIF 59
Query: 51 TSEYK-----------------LGRS-NFSFSEHPFSF------SSISLNHFRTYGSVAA 86
+ + LG S N +FS F S SL R+YGS AA
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGS-AA 118
Query: 87 EAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KYKMLRRRQ 143
EAI ST ED + +Q+L+++M E E L+ K+ KY LRRRQ
Sbjct: 119 EAIVSTSEEDI-----DEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQ 173
Query: 144 IKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTK 203
IK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q++C + K
Sbjct: 174 IKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGK 233
Query: 204 TRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYR 263
R ++AP+F++LP +MMAVITMHKLMGLLMT G GSARV+QAA IGEAIEHE RI+R
Sbjct: 234 NRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGG-GTGSARVVQAASYIGEAIEHEARIHR 292
Query: 264 FMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQA 323
F+EKTK A S D + P + KE +RLR KV L+KKQK +Q
Sbjct: 293 FLEKTKKSNALS--GDLEETPGD-------------MMKERERLRKKVKILMKKQKLRQV 337
Query: 324 LGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTI 383
IVK +D KPWGQ+ VKVG RLIQ+L+ETAY++PP ++ DG PDI PAF HTLKT+
Sbjct: 338 RKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV 397
Query: 384 SNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYV 443
++ GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 444 MRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLV 503
MR HGAKQQR+A+K PK QL+ +F+AL+TLGNTKWRVN+ VLG++++IWA+GGR+ADLV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLV 515
Query: 504 DRDDV 508
DR+DV
Sbjct: 516 DREDV 520
>UniRef100_Q93Y94 DNA-directed RNA polymerase 1, mitochondrial precursor [Nicotiana
sylvestris]
Length = 1002
Score = 516 bits (1330), Expect = e-145
Identities = 277/492 (56%), Positives = 351/492 (71%), Gaps = 34/492 (6%)
Query: 20 SSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFSFSSISLNHFR 79
S S + H E+ ++P SQ +F+S + +F S SL R
Sbjct: 60 SRISRKVRHLEGICEESSKNPHLGLSQNSLFSSV----KGDFRVCGKR---GSGSLGFLR 112
Query: 80 TYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSY---KY 136
+YGS AAEAI ST ED + +Q+L+++M E E L+ K+ KY
Sbjct: 113 SYGS-AAEAIASTSEEDI-----DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKY 166
Query: 137 KMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQ 196
+LRRRQIK+ETEAWEEAA+EYQELL DM EQKLAPNLPYMKSLFLGWFEPL++AIAA+Q
Sbjct: 167 NLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQ 226
Query: 197 EICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIE 256
++C + K R ++AP+F++LP +MMAVITMHKLMGLLMT G GSARV+QAA IGEAIE
Sbjct: 227 KLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGG-GTGSARVVQAASHIGEAIE 285
Query: 257 HEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIK 316
HE RI+RF+EKTK A S D + P + KE +R+R KV L+K
Sbjct: 286 HEARIHRFLEKTKKSNALS--GDLEDTPGDIM-------------KERERVRKKVKILMK 330
Query: 317 KQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAF 376
KQK QQ IVK +D KPWGQ+ VKVG RLIQ+L+ETAY++PP ++ D PDI PAF
Sbjct: 331 KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390
Query: 377 KHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAY 436
HTLKT+ ++ GSRRYGVI+CDP+++KGL+KTAR+MVIPYMPMLVPP +W+GYDKGAY
Sbjct: 391 VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448
Query: 437 LFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANG 496
LFLPSY+MR HGAKQQR+A+K PK QL+ +F+AL+TLGNTKWR+N+ VLG++D+IWA+G
Sbjct: 449 LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508
Query: 497 GRVADLVDRDDV 508
GR+ADLVDR+DV
Sbjct: 509 GRLADLVDREDV 520
>UniRef100_Q84LK6 RpoT1 [Oryza sativa]
Length = 1017
Score = 489 bits (1260), Expect = e-137
Identities = 237/376 (63%), Positives = 300/376 (79%), Gaps = 14/376 (3%)
Query: 134 YKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIA 193
+KY MLRRRQI+IETEAWE+AA EY+ELL DM +QKLAPNLPY+KSLFLGWFEPL++ I
Sbjct: 175 HKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQII 234
Query: 194 ADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGE 253
A+QE+ + R SHA YFN LP DMMAVITMHKLMGLLMT S G GS RVIQAACQIGE
Sbjct: 235 AEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGS-GDGSVRVIQAACQIGE 293
Query: 254 AIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVAS 313
AIEHE RI++F+EKTK K ++ + + +AKE++RLR KV
Sbjct: 294 AIEHEVRIHKFLEKTKKKSNKEMDNEEEG-------------GDSDIAKEQERLRKKVTD 340
Query: 314 LIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIF 373
L+KKQK +Q IVK +D +KPWGQ+A KVGSRLI+L+IETAY++PPA++ DG PDI
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400
Query: 374 PAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
PAF H ++T++ + SRRYGVI+CDP++++GL++TA++MVIPYMPML+PP +W GYDK
Sbjct: 401 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 460
Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
GA+LFLPSYVMR HGA+QQRDA++ AP+ Q+ S+FEALNTLG+TKWRVNK VL ++D+IW
Sbjct: 461 GAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIW 520
Query: 494 ANGGRVADLVDRDDVS 509
++GGR+ADLVDR DV+
Sbjct: 521 SSGGRLADLVDRTDVA 536
>UniRef100_Q6K326 Putative phage-type RNA polymerase [Oryza sativa]
Length = 951
Score = 489 bits (1260), Expect = e-137
Identities = 237/376 (63%), Positives = 300/376 (79%), Gaps = 14/376 (3%)
Query: 134 YKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIA 193
+KY MLRRRQI+IETEAWE+AA EY+ELL DM +QKLAPNLPY+KSLFLGWFEPL++ I
Sbjct: 175 HKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQII 234
Query: 194 ADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGE 253
A+QE+ + R SHA YFN LP DMMAVITMHKLMGLLMT S G GS RVIQAACQIGE
Sbjct: 235 AEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGS-GDGSVRVIQAACQIGE 293
Query: 254 AIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVAS 313
AIEHE RI++F+EKTK K ++ + + +AKE++RLR KV
Sbjct: 294 AIEHEVRIHKFLEKTKKKSNKEMDNEEEG-------------GDSDIAKEQERLRKKVTD 340
Query: 314 LIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIF 373
L+KKQK +Q IVK +D +KPWGQ+A KVGSRLI+L+IETAY++PPA++ DG PDI
Sbjct: 341 LMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR 400
Query: 374 PAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
PAF H ++T++ + SRRYGVI+CDP++++GL++TA++MVIPYMPML+PP +W GYDK
Sbjct: 401 PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDK 460
Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
GA+LFLPSYVMR HGA+QQRDA++ AP+ Q+ S+FEALNTLG+TKWRVNK VL ++D+IW
Sbjct: 461 GAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIW 520
Query: 494 ANGGRVADLVDRDDVS 509
++GGR+ADLVDR DV+
Sbjct: 521 SSGGRLADLVDRTDVA 536
>UniRef100_Q8L6J7 Mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 488 bits (1257), Expect = e-136
Identities = 264/521 (50%), Positives = 359/521 (68%), Gaps = 31/521 (5%)
Query: 1 MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
MW + K+ SSR SS + +S + + + S + I S +G N
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 61 FS-------FSEHPFSFSSISLNHF---RTYGSVA-AEAIESTDTEDDCSGSEEVVQKLL 109
F P + ++ N F ++Y SVA A A+ STD E+D S +EV Q+LL
Sbjct: 95 LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEV-QELL 153
Query: 110 DQMVIEEEKKNPQLEEKKKNKNNSY---KYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
++ EE+K+ K++ + KY+ L+RRQ+K+ETEAWE+AA+EY+ELL DM
Sbjct: 154 TELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 213
Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
EQKLAPNLPY+KSLFLGWFEPL++ IA +QE+C K++ ++A Y +LP DMMAVITMH
Sbjct: 214 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMH 273
Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
KLMGLLMT + G+ARV+QAA IG+AIE E RI+ F+EKTK +KA K D
Sbjct: 274 KLMGLLMTGGDH-GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED----- 327
Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
GE++T +E+++LR KV +L+KKQK + IV+ +D +KPWGQ+A+ KVGS
Sbjct: 328 --GEHVT--------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGS 377
Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
RLI+LL++TAY++PPAN+ PDI PAF H+++T++ ++ + SRRYG+I+CD ++ KG
Sbjct: 378 RLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKG 437
Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
LE+TAR+MVIPYMPMLVPP W GYDKG +L+LPSYVMR HGA+QQR+A+K A +NQL
Sbjct: 438 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 497
Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
+FEAL+TLG+TKWR+NK VL VID+IWA GGR+ADLVDRDD
Sbjct: 498 VFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDD 538
>UniRef100_Q9XF15 T7-like RNA polymerase [Zea mays]
Length = 975
Score = 488 bits (1255), Expect = e-136
Identities = 247/447 (55%), Positives = 322/447 (71%), Gaps = 35/447 (7%)
Query: 83 SVAAEAIESTDTEDDCSGSEEVVQ-----KLLDQMVIEEEKKNPQLEEKKKNKNNS---- 133
S AAEA+ S D E+ EE+V+ L + EE + P + + +++ +
Sbjct: 61 SAAAEAVSSEDAEELHHAIEEIVRPQPSPNLPQPQAVAEEYQAPGRDHRSRHRRSGRGRH 120
Query: 134 ------------YKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLF 181
++Y LRRRQI+IETEAWE+AA EY+ELL DM EQKLAPNLPY+KSLF
Sbjct: 121 AEVLAAEHGMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLF 180
Query: 182 LGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGS 241
LGWFEPL++ IA +QE+ D +R SH P+F+ LP DMMAVITMHKLMGLLMT S G GS
Sbjct: 181 LGWFEPLRDQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGS-GDGS 239
Query: 242 ARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLA 301
RVIQAACQIGEAIEHE RI RF+EKT+ K +++ ++ + +A
Sbjct: 240 VRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEA-------------GDTNIA 286
Query: 302 KEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPP 361
E++RLR KV L+KKQK +Q IVK +D+++PWGQ+A KVGSRLI L I TA+++PP
Sbjct: 287 VEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPP 346
Query: 362 ANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPM 421
A++ DG PDI PAF+H ++T+ + SRRYGVI+CDP++++GL++TA++MVIPYMPM
Sbjct: 347 ASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPM 406
Query: 422 LVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRV 481
L+PP W GYDKGA+LFLPSYVMR HGA+QQRDA+K AP+ Q+ +FEALNTLG+TKWRV
Sbjct: 407 LIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRV 466
Query: 482 NKSVLGVIDQIWANGGRVADLVDRDDV 508
NK VL ++D+IW+NGGR+ADLVDR DV
Sbjct: 467 NKRVLSIVDRIWSNGGRLADLVDRTDV 493
>UniRef100_Q8VWF8 DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor
[Nicotiana sylvestris]
Length = 1020
Score = 487 bits (1253), Expect = e-136
Identities = 265/521 (50%), Positives = 356/521 (67%), Gaps = 32/521 (6%)
Query: 1 MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
MW + K+ SSR SS + +S + I + S + I S +G N
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 61 FS-------FSEHPFSFSSISLNHF--RTYGSVA-AEAIESTDTEDDCSGSEEVVQKLLD 110
F P + ++ N ++Y SVA A A+ STD E+D S +EV + L +
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTE 154
Query: 111 QMVIEEEKKNPQLEEKKKNKNNS----YKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
+ +EEKK +K+ S KY+ L+RRQ+K+ETEAWE+AA+EY+ELL DM
Sbjct: 155 --LKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMC 212
Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
EQKLAPNLPY+KSLFLGWFEPL++ IA +QE+C K++ ++A YF +LP DMMAVITMH
Sbjct: 213 EQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMH 272
Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
KLMGLLMT + G+ARV+QAA IG+AIE E RI+ F+EKTK +KA K D
Sbjct: 273 KLMGLLMTGGDH-GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED----- 326
Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
GE++T +E+++LR KV +L+KKQK + IV+ +D +KPWGQ+A+ KVGS
Sbjct: 327 --GEHVT--------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGS 376
Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
RLI LL++TAY++PPAN+ PDI PAF H+++T++ ++ + SRRYG+I+CD ++ KG
Sbjct: 377 RLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQCDELVFKG 436
Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
LE+TAR+MVIPYMPMLVPP W GYDKG +L+LPSYVMR HGA+QQR+A+K A +NQL
Sbjct: 437 LERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQP 496
Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDD 507
+FEAL+TLGNTKWR+NK VL V+D+IWA GGR+ADLVDRDD
Sbjct: 497 VFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDD 537
>UniRef100_P93661 Mitochondrial single-subunit DNA-dependent RNA polymerase
[Chenopodium album]
Length = 988
Score = 486 bits (1252), Expect = e-136
Identities = 271/501 (54%), Positives = 347/501 (69%), Gaps = 37/501 (7%)
Query: 18 SQSSTSLR-FSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSNFSFSEHPFS-FSSISL 75
SQ S +R F Q++ + F R ++ SE +G SNF F +PF F +
Sbjct: 33 SQDSAKIRQFLGQNSVNPRFPMLGFGRNGELLCRNSE--MGGSNFMFYANPFGIFGFYAQ 90
Query: 76 NHFRTYGSVAA-EAIESTDTEDDCSGSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKN--- 131
+ +Y + AA E I + +E+D + +++L+D+ + + E+ PQ +K+ N
Sbjct: 91 STSCSYATAAAAEEIVTASSEED-----DEIRELVDE-INKLERVKPQSIRRKEPINMVA 144
Query: 132 --NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLK 189
+ +Y +LR+RQIK+ETEAW EAAREYQELL DM EQKLAPNLPYMKSLFLGWFEPLK
Sbjct: 145 GMTAGRYNVLRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLK 204
Query: 190 NAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAAC 249
+AI A QE CK + R + F+ELP DMMAVITMHKLMGLLMT S G G VIQAA
Sbjct: 205 DAIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGS-GNGGTTVIQAAT 263
Query: 250 QIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRN 309
QIGEA+E E +I +F+EK+K K AT++ + DS AK ++RL
Sbjct: 264 QIGEAVEQEAKIRKFLEKSKKKPATNNNDEDDS------------------AKAQQRLAK 305
Query: 310 KVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGG 369
KV +L+KKQK Q IV+G+D +KPW Q+ QVKVG +LIQLL ETAY++PPA++ DG
Sbjct: 306 KVTTLMKKQKISQVREIVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGP 365
Query: 370 PDIFPAFKHTLKTISNDSNNG-SRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNW 428
PDI PAF HT KT+ +S G RRYGVIECDP++++GLEKTAR+MVIPYMPML+PP NW
Sbjct: 366 PDIRPAFIHTQKTVCKESQKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNW 425
Query: 429 IGYDKGAYLFLPSYVMRIHGAKQQRDALK-WAPKNQLDSIFEALNTLGNTKWRVNKSVLG 487
GYDKGAYL+LPSY+MR HG KQQRDA+K A N L ++FEAL+TLGNTKWRVNK VL
Sbjct: 426 TGYDKGAYLYLPSYIMRTHGVKQQRDAIKRVARDNNLCTVFEALDTLGNTKWRVNKKVLS 485
Query: 488 VIDQIWANGGRVADLVDRDDV 508
+ID+IWA+GG +ADLVDR+D+
Sbjct: 486 IIDRIWASGGCLADLVDREDM 506
>UniRef100_Q9MQV1 Single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 482 bits (1240), Expect = e-134
Identities = 249/451 (55%), Positives = 324/451 (71%), Gaps = 32/451 (7%)
Query: 76 NHFRTYGSVAAEAIESTDTEDDCSGSEEVVQ------------KLLDQMVIEEEKKNP-- 121
+ F + + AAEA+ S + ++ EE+V+ Q +E+++
Sbjct: 89 SRFASSSAAAAEAVSSEEVDEPHHAPEEIVRLGPNTKLPVAEAAAAGQAGKKEQRRGRGQ 148
Query: 122 --QLEEKKKNKNNSY-KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMK 178
QL E Y KY LR+RQI+IETEAWE+AA+EY+ELL DM E KLAPNLPY+K
Sbjct: 149 GRQLAELAAEHGIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVK 208
Query: 179 SLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNG 238
SLFL WFEPL++ I A+QE+ + TR SHAPYFN LP DMMAVITMHKLMGLLMT S G
Sbjct: 209 SLFLSWFEPLRDQIIAEQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGS-G 267
Query: 239 VGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENE 298
GS RVIQAACQIGEA+EHE RI++F+EKTK K ++V A +
Sbjct: 268 DGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADI----------- 316
Query: 299 KLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYL 358
AKE++RLR KV L+KKQK +Q +VK +D +PWGQ+A KVGSRLI+L IETA++
Sbjct: 317 --AKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHI 374
Query: 359 EPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPY 418
+PPA++ GD P+I PAF H ++T++ + SRRYGVI+CDP++++GL++TA++MVIPY
Sbjct: 375 QPPASQSGDSTPEIRPAFTHEMRTVAREQRK-SRRYGVIKCDPLVRQGLDRTAKHMVIPY 433
Query: 419 MPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTK 478
MPML+PP NW GYDKGA+LFLPSYVMR HGA+QQR+A+K APK Q+ +IFEAL+ LG+TK
Sbjct: 434 MPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTK 493
Query: 479 WRVNKSVLGVIDQIWANGGRVADLVDRDDVS 509
WRVNK VL ++D+IW++GGR+ADLVDR DVS
Sbjct: 494 WRVNKEVLSIVDRIWSSGGRLADLVDRADVS 524
>UniRef100_P92969 DNA-directed RNA polymerase, mitochondrial precursor [Arabidopsis
thaliana]
Length = 976
Score = 476 bits (1225), Expect = e-133
Identities = 252/522 (48%), Positives = 347/522 (66%), Gaps = 42/522 (8%)
Query: 1 MWSKLAKRASSRRFILPSQSSTSLRFSHQHNFPEKILRHPFSRFSQVGIFTSEYKLGRSN 60
MW + RAS R+ S SS+S ++P +R S + G+ R+
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSS-----GTHYPVNRVRGILSSVNLSGV--------RNG 47
Query: 61 FSFSEHPFSFSSISLNHFRTYG----SVAAEAIESTDTEDDCSGSEEVVQKLLDQMVIEE 116
S + S H + Y + AA+AI+STD ED+ SGS+EV ++++ E
Sbjct: 48 LSINPVNEMGGLSSFRHGQCYVFEGYATAAQAIDSTDPEDESSGSDEV-----NELITEM 102
Query: 117 EKKNPQLEEKKKNKN----------NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMR 166
EK+ ++ +K + + K+ ML++RQ+K+ETE WE AARE +E+L DM
Sbjct: 103 EKETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMC 162
Query: 167 EQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMH 226
EQKLAPNLPYMKSLFLGWFEP++NAI D + K K ++ +AP+ +LP D MAVITMH
Sbjct: 163 EQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMH 222
Query: 227 KLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAP 286
K+MGLLMTN+ GVG +++ AA QIGEA+E E RI F++K K AT ++++
Sbjct: 223 KMMGLLMTNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEA---- 278
Query: 287 VKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGS 346
EN++ E +AKE ++ R +V L++K K +Q +V+ D KPWGQEAQVKVG+
Sbjct: 279 ---ENVS---EEIVAKETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGA 332
Query: 347 RLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKG 406
RLIQLL+E AY++PPA +F DG PDI PAFK +T++ ++ SRRYG IECDP++ KG
Sbjct: 333 RLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKG 392
Query: 407 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 466
L+K+AR+MVIPY+PML+PP NW GYD+GA+ FLPSYVMR HGAKQQR +K PK QL+
Sbjct: 393 LDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEP 452
Query: 467 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
++EAL+TLGNTKW++NK VL ++D+IWANGGR+ LVDR+DV
Sbjct: 453 VYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDV 494
>UniRef100_Q70BU3 RNA polymerase [Hordeum vulgare]
Length = 862
Score = 475 bits (1223), Expect = e-132
Identities = 235/375 (62%), Positives = 297/375 (78%), Gaps = 16/375 (4%)
Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
KY LR+RQI+IETEAWE+AA+EY+ELL DM E KLAPNLPY+KSLFLGWFEPL++ I A
Sbjct: 23 KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA 82
Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
+QE+ + TR SHAPYFN LP DMMAVITMHKLMGLLMT S G GS RVIQAACQIGEA
Sbjct: 83 EQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGS-GDGSVRVIQAACQIGEA 141
Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
+EHE RI++F+EKTK K + D V P + +AKE++ LR KV L
Sbjct: 142 VEHEVRIHKFLEKTKKKNT----KEVDKVVEPGDSD---------IAKEQQLLRKKVTDL 188
Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
+KKQK +Q +VK +D +PWGQ+A KVGSRLI+L IETA+++PPA++ GD P+I P
Sbjct: 189 MKKQKIRQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRP 248
Query: 375 AFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKG 434
AF H ++T++ + SRRYGVI+CDP++++GL++TA++MVIPYMPML+PP NW GYDKG
Sbjct: 249 AFTHEMRTVAREQK--SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKG 306
Query: 435 AYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWA 494
A+LFLPSYVMR HGA+QQR+A+K APK Q+ +IFEAL+ LG+TKWRVNK VL ++D+IW+
Sbjct: 307 AHLFLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWS 366
Query: 495 NGGRVADLVDRDDVS 509
+GGR+ADLVDR DVS
Sbjct: 367 SGGRLADLVDRADVS 381
>UniRef100_O23644 DNA-directed RNA polymerase precursor [Arabidopsis thaliana]
Length = 1011
Score = 434 bits (1115), Expect = e-120
Identities = 254/517 (49%), Positives = 327/517 (63%), Gaps = 36/517 (6%)
Query: 1 MWSKLAKRASSR---RFILPSQSSTSLRFSHQHNFPEKI-LRHPF--SRFSQVGIFTSEY 54
MW +AK+A SR R + SQ+ L S + F + + R P S G
Sbjct: 40 MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGKGFRCLSG 99
Query: 55 KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVI 114
R FS SE S + R Y SVA E + STD E+ E V +LL +M
Sbjct: 100 ITRREEFSKSERCLSGTLA-----RGYTSVAEEEVLSTDVEE-----EPEVDELLKEMKK 149
Query: 115 EEEKKNPQLEEKKKNKN---NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLA 171
E+++++ + KK K++ L RRQ+KIETE WE AA EY ELL DM EQKLA
Sbjct: 150 EKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLA 209
Query: 172 PNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGL 231
PNLPY+KSLFLGWFEPL++AIA DQE+ + K++ ++A Y ++LP D ++VITMHKLMG
Sbjct: 210 PNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGH 269
Query: 232 LMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGEN 291
LMT + G +V+ AAC +G+AIE E RI F++K K K D + V
Sbjct: 270 LMTGGDN-GCVKVVHAACTVGDAIEQEIRICTFLDKKK-------KGDDNEESGGV---- 317
Query: 292 LTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQL 351
ENE KE+ +LR KV LIKKQK I++ D KPW + + KVGSRLI+L
Sbjct: 318 ----ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIEL 373
Query: 352 LIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTA 411
L+ TAY++ PA++ + PD+ PAF HT K N+G R+YGVIECDP+++KGLEK+
Sbjct: 374 LVRTAYIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSG-RKYGVIECDPLVRKGLEKSG 432
Query: 412 RNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEAL 471
R V+PYMPMLVPP W GYDKGAYLFL SY+MR HGAKQQR+ALK APK QL +FEAL
Sbjct: 433 RYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEAL 492
Query: 472 NTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
+TLG+TKWRVNK VL V+D+IW++GG VAD+VDR DV
Sbjct: 493 DTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDV 529
>UniRef100_Q9LFV6 DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1011
Score = 432 bits (1112), Expect = e-120
Identities = 253/517 (48%), Positives = 327/517 (62%), Gaps = 36/517 (6%)
Query: 1 MWSKLAKRASSR---RFILPSQSSTSLRFSHQHNFPEKI-LRHPF--SRFSQVGIFTSEY 54
MW +AK+A SR R + SQ+ L S + F + + R P S G
Sbjct: 40 MWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFRFPVLGSPCHGKGFRCLSG 99
Query: 55 KLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQKLLDQMVI 114
R FS SE S + R Y SVA E + STD E+ E V +LL +M
Sbjct: 100 ITRREEFSKSERCLSGTLA-----RGYTSVAEEEVLSTDVEE-----EPEVDELLKEMKK 149
Query: 115 EEEKKNPQLEEKKKNKN---NSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLA 171
E+++++ + KK K++ L RRQ+KIETE WE AA EY ELL DM EQKLA
Sbjct: 150 EKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLA 209
Query: 172 PNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGL 231
PNLPY+KSLFLGWFEPL++AIA DQE+ + K++ ++A Y ++LP D ++VITMHKLMG
Sbjct: 210 PNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGH 269
Query: 232 LMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGEN 291
LMT + G +V+ AAC +G+AIE E RI F++K K K D + V
Sbjct: 270 LMTGGDN-GCVKVVHAACTVGDAIEQEIRICTFLDKKK-------KGDDNEESGGV---- 317
Query: 292 LTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQL 351
ENE KE+ +LR KV LIKKQK I++ D KPW + + KVGSRLI+L
Sbjct: 318 ----ENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIEL 373
Query: 352 LIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTA 411
L+ TAY++ PA++ + PD+ PAF HT K N+G R+YGVIECDP+++KGLEK+
Sbjct: 374 LVRTAYIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSG-RKYGVIECDPLVRKGLEKSG 432
Query: 412 RNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEAL 471
R V+PYMPMLVPP W GYDKGAYLFL SY+M+ HGAKQQR+ALK APK QL +FEAL
Sbjct: 433 RYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEAL 492
Query: 472 NTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
+TLG+TKWRVNK VL V+D+IW++GG VAD+VDR DV
Sbjct: 493 DTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSDV 529
>UniRef100_Q8L6J6 Chloroplast RNA polymerase [Nicotiana tabacum]
Length = 977
Score = 374 bits (960), Expect = e-102
Identities = 186/375 (49%), Positives = 253/375 (66%), Gaps = 18/375 (4%)
Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
+Y MLRRRQIK ETEAWE+ EY+EL +M E+KLAPNLPY+K L LGWFEPL+ AI
Sbjct: 138 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 197
Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
+Q K R + AP+ + LP D MAVI MHKLMGLLM +V+QAA QIG A
Sbjct: 198 EQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMA 257
Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
+E+E RI+ F+EKTK K H + A+ E ++KE LR +V SL
Sbjct: 258 VENEVRIHNFLEKTK--KLQKHMTG--------------AQSQEDMSKETMILRKRVKSL 301
Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
IK+ + + ++K ++ + WG++ Q K+G RL++LL ETAY++ P ++ D PDI P
Sbjct: 302 IKRNRVVEVRKLMKS-EEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRP 360
Query: 375 AFKHTLKTISND-SNNGSRRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
AF+H K + D N ++YGVIECDP++ G+++T + M+IPY+PMLVPP W GYDK
Sbjct: 361 AFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDK 420
Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
G YLFLPSY+MR HG+++Q+DA++ P Q+ ++EAL+TLG+TKWRVNK +L V++ IW
Sbjct: 421 GGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIW 480
Query: 494 ANGGRVADLVDRDDV 508
A GG +A LVDR DV
Sbjct: 481 AGGGNIAGLVDRKDV 495
>UniRef100_Q8L4F8 DNA-directed RNA polymerase 3, chloroplast precursor [Nicotiana
sylvestris]
Length = 977
Score = 374 bits (959), Expect = e-102
Identities = 184/375 (49%), Positives = 253/375 (67%), Gaps = 18/375 (4%)
Query: 135 KYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAA 194
+Y MLRRRQIK ETEAWE+ EY+EL +M E+KLAPNLPY+K L LGWFEPL+ AI
Sbjct: 139 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 198
Query: 195 DQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEA 254
+Q K R + AP+ + LP D MAVI MHKLMGLLM +V+QAA QIG A
Sbjct: 199 EQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMA 258
Query: 255 IEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASL 314
+E+E RI+ F+EKTK K H + A+ E +++E LR +V SL
Sbjct: 259 VENEVRIHNFLEKTK--KLQKHMTG--------------AQSQEDMSRETMILRKRVKSL 302
Query: 315 IKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFP 374
IK+ + + ++K ++ + WG++ Q K+G RL++LL ETAY++PP ++ D PDI P
Sbjct: 303 IKRNRVVEVRKLMKS-EEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRP 361
Query: 375 AFKHTLKTISNDSNNGS-RRYGVIECDPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDK 433
AF+H + + D ++YGVIECDP++ G+++T + M+IPY+PMLVPP W GYDK
Sbjct: 362 AFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDK 421
Query: 434 GAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIW 493
G YLFLPSY+MR HG+++Q+DA++ P Q+ ++EAL+TLG+TKWRVNK +L V++ IW
Sbjct: 422 GGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIW 481
Query: 494 ANGGRVADLVDRDDV 508
A GG +A LVDR DV
Sbjct: 482 AGGGNIAGLVDRKDV 496
>UniRef100_Q84LK5 T3/T7-like RNA polymerase [Oryza sativa]
Length = 953
Score = 372 bits (956), Expect = e-101
Identities = 183/407 (44%), Positives = 278/407 (67%), Gaps = 20/407 (4%)
Query: 102 EEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQEL 161
+EV ++ ++ +E E++ + E+++ + +++ LR+RQ+K ETEAW AA EY+EL
Sbjct: 85 QEVEVEVEVEVGVERERERERERERERERARKAEHRRLRQRQVKAETEAWARAADEYREL 144
Query: 162 LEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMA 221
+M +++LAP LPY+KSLFLGWFEPL++AIA DQE+ + + + +A Y LP D +A
Sbjct: 145 EREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVA 204
Query: 222 VITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSD 281
VI MHK+MGLLM++ +GV S RV+QAA IGEA+E E ++ F +KT+ K A
Sbjct: 205 VIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKTRKKSA-------- 256
Query: 282 SVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQ 341
GEN A L KE+ + R +V SL++++K +A IV+ + + WG E+Q
Sbjct: 257 -------GENDLA-----LEKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQ 304
Query: 342 VKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDP 401
VK+G+RLI+LL+++A+++ PA++ + PDI PAFKH L+ ++ +++ VIECDP
Sbjct: 305 VKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVENGRLKKKHWVIECDP 364
Query: 402 MIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPK 461
++ +G E TAR++ IPY+PMLV P W GYD G YLFLPSY+MR HG K Q++A+K P+
Sbjct: 365 LVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPR 424
Query: 462 NQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
QL +FEAL+TLG+TKWRVN+ V ++ IW+ GG +A LVD++++
Sbjct: 425 KQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGGIAGLVDKENI 471
>UniRef100_Q70XR1 DNA-directed RNA polymerase, chloroplast [Hordeum vulgare var.
distichum]
Length = 948
Score = 371 bits (953), Expect = e-101
Identities = 183/394 (46%), Positives = 271/394 (68%), Gaps = 17/394 (4%)
Query: 116 EEKKNPQLEE-KKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNL 174
EE+ LE K++ + ++ LR+RQ+K ETEAW AA EY++L +M ++ LAP L
Sbjct: 89 EEELAALLERGKERERARRAGHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQL 148
Query: 175 PYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMT 234
PY+KSLFLGWFEPL++A+A DQ++ + + + +A Y LPP+ +AVI MHK+MGLLM+
Sbjct: 149 PYVKSLFLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMS 208
Query: 235 NSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTA 294
+ +G GS RV+QAA IGEA+E E ++ F +KT+ K T K++S++ PA
Sbjct: 209 SKDGCGSVRVVQAAHSIGEAVEREYKVQAFFQKTRRK--TRSKNESENDPA--------- 257
Query: 295 EENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIE 354
L KE+ + R V SL++++K +A +V+ + + WG EAQVK+G+RLI+LL++
Sbjct: 258 -----LDKEQAKCRKLVKSLVRRRKLTEAQKLVQQEIELEEWGAEAQVKLGTRLIELLLD 312
Query: 355 TAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNM 414
+A+++ PAN+ D PD PAFKH L+ ++ +++ VIECDP++ +G E TAR++
Sbjct: 313 SAFVQSPANQTPDNSPDFRPAFKHVLRKPIVENGRLKKKHFVIECDPLVHEGFESTARHV 372
Query: 415 VIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTL 474
IPY+PMLVPP W GYDKG +LFLPSYVMR HG K Q++A+K P+ QL +FEAL+ L
Sbjct: 373 EIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQKEAIKSVPRKQLRKVFEALDIL 432
Query: 475 GNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
G TKWRVN+ V V++ IW+ GG +A LVD++++
Sbjct: 433 GGTKWRVNRRVHDVVETIWSRGGGIAGLVDKENI 466
>UniRef100_Q70XR0 DNA-directed RNA polymerase, chloroplast [Hordeum vulgare var.
distichum]
Length = 948
Score = 371 bits (953), Expect = e-101
Identities = 183/394 (46%), Positives = 271/394 (68%), Gaps = 17/394 (4%)
Query: 116 EEKKNPQLEE-KKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNL 174
EE+ LE K++ + ++ LR+RQ+K ETEAW AA EY++L +M ++ LAP L
Sbjct: 89 EEELAALLERGKERERARRAGHRRLRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQL 148
Query: 175 PYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMT 234
PY+KSLFLGWFEPL++A+A DQ++ + + + +A Y LPP+ +AVI MHK+MGLLM+
Sbjct: 149 PYVKSLFLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMS 208
Query: 235 NSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSDSDSVPAPVKGENLTA 294
+ +G GS RV+QAA IGEA+E E ++ F +KT+ K T K++S++ PA
Sbjct: 209 SKDGCGSVRVVQAAHSIGEAVEREYKVQAFFQKTRRK--TRSKNESENDPA--------- 257
Query: 295 EENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSRLIQLLIE 354
L KE+ + R V SL++++K +A +V+ + + WG EAQVK+G+RLI+LL++
Sbjct: 258 -----LDKEQAKCRKLVKSLVRRRKLTEAQKLVQQEIELEEWGAEAQVKLGTRLIELLLD 312
Query: 355 TAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIECDPMIQKGLEKTARNM 414
+A+++ PAN+ D PD PAFKH L+ ++ +++ VIECDP++ +G E TAR++
Sbjct: 313 SAFVQSPANQTPDNSPDFRPAFKHVLRKPIVENGRLKKKHFVIECDPLVHEGFESTARHV 372
Query: 415 VIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDSIFEALNTL 474
IPY+PMLVPP W GYDKG +LFLPSYVMR HG K Q++A+K P+ QL +FEAL+ L
Sbjct: 373 EIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQKEAIKSVPRKQLRKVFEALDIL 432
Query: 475 GNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
G TKWRVN+ V V++ IW+ GG +A LVD++++
Sbjct: 433 GGTKWRVNRRVHDVVETIWSRGGGIAGLVDKENI 466
>UniRef100_Q9SYW4 T7-like RNA polymerase [Zea mays]
Length = 952
Score = 369 bits (948), Expect = e-101
Identities = 185/409 (45%), Positives = 277/409 (67%), Gaps = 21/409 (5%)
Query: 100 GSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQ 159
G EE+ L ++ +E EK E+++ + + + LR+RQ+K ETEAW AA EY+
Sbjct: 83 GEEELEAGLELELELELEKHAEV--ERQRGRARRAQLRRLRQRQVKAETEAWARAAEEYR 140
Query: 160 ELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDM 219
E+ +M +++LAP LPY+K+LF+GWFEPL++AIA DQ++ + + + +A Y LP D
Sbjct: 141 EIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKRVKHVYAKYLLLLPADK 200
Query: 220 MAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSD 279
+AVI MHK+MGLLM++ +G GS RV+QAA IGEA+E E ++ F +K++ KK
Sbjct: 201 VAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQSFFQKSRKKK------- 253
Query: 280 SDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQE 339
++GEN A L KE+ + R +V SL+K++K +A +V+ + + WG E
Sbjct: 254 -------IQGENDPA-----LEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGTE 301
Query: 340 AQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIEC 399
AQVK+GSRLI+LL+++A+++PPA++ D PDI PAFKH L+ ++ +++ VIEC
Sbjct: 302 AQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHWVIEC 361
Query: 400 DPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWA 459
D ++ +G E TAR++ IPY+PMLVPP W GYDKG +LFLPSY+MR HG K Q+DA+
Sbjct: 362 DHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINSV 421
Query: 460 PKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
P+ QL +FEAL+ LG+TKWRVN+ V V++ IW+ GG +A LVD+ ++
Sbjct: 422 PRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANI 470
>UniRef100_O82725 DNA directed RNA polymerase [Zea mays]
Length = 952
Score = 369 bits (948), Expect = e-101
Identities = 185/409 (45%), Positives = 277/409 (67%), Gaps = 21/409 (5%)
Query: 100 GSEEVVQKLLDQMVIEEEKKNPQLEEKKKNKNNSYKYKMLRRRQIKIETEAWEEAAREYQ 159
G EE+ L ++ +E EK E+++ + + + LR+RQ+K ETEAW AA EY+
Sbjct: 83 GEEELEAGLELELELELEKHAEV--ERQRGRARRAQLRRLRQRQVKAETEAWARAAEEYR 140
Query: 160 ELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDM 219
E+ +M +++LAP LPY+K+LF+GWFEPL++AIA DQ++ + + + +A Y LP D
Sbjct: 141 EIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKRVKHVYAKYLLLLPADK 200
Query: 220 MAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKTKVKKATSHKSD 279
+AVI MHK+MGLLM++ +G GS RV+QAA IGEA+E E ++ F +K++ KK
Sbjct: 201 VAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQSFFQKSRKKK------- 253
Query: 280 SDSVPAPVKGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQE 339
++GEN A L KE+ + R +V SL+K++K +A +V+ + + WG E
Sbjct: 254 -------IQGENDPA-----LEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGTE 301
Query: 340 AQVKVGSRLIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTISNDSNNGSRRYGVIEC 399
AQVK+GSRLI+LL+++A+++PPA++ D PDI PAFKH L+ ++ +++ VIEC
Sbjct: 302 AQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENGRLKKKHWVIEC 361
Query: 400 DPMIQKGLEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWA 459
D ++ +G E TAR++ IPY+PMLVPP W GYDKG +LFLPSY+MR HG K Q+DA+
Sbjct: 362 DHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINSV 421
Query: 460 PKNQLDSIFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 508
P+ QL +FEAL+ LG+TKWRVN+ V V++ IW+ GG +A LVD+ ++
Sbjct: 422 PRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANI 470
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 862,452,119
Number of Sequences: 2790947
Number of extensions: 36951309
Number of successful extensions: 169986
Number of sequences better than 10.0: 387
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 168106
Number of HSP's gapped (non-prelim): 1535
length of query: 515
length of database: 848,049,833
effective HSP length: 132
effective length of query: 383
effective length of database: 479,644,829
effective search space: 183703969507
effective search space used: 183703969507
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC144726.11