BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144721.10 + phase: 0 /pseudo
         (813 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q688L2 Putative polyprotein [Oryza sativa]                  518  e-145
UniRef100_Q6ATH4 Putative polyprotein [Oryza sativa]                  506  e-141
UniRef100_Q8S1E5 Putative gag/pol polyprotein [Oryza sativa]          506  e-141
UniRef100_Q8S805 Putative copia-type polyprotein [Oryza sativa]       499  e-139
UniRef100_Q8W5M3 Putative gag-pol polyprotein [Oryza sativa]          489  e-136
UniRef100_Q7X7W7 OSJNBa0061G20.2 protein [Oryza sativa]               488  e-136
UniRef100_Q7X7N0 OSJNBa0035I04.5 protein [Oryza sativa]               475  e-132
UniRef100_Q9SA17 F28K20.17 protein [Arabidopsis thaliana]             386  e-105
UniRef100_O81824 Hypothetical protein AT4g27210 [Arabidopsis tha...   384  e-105
UniRef100_Q7XE22 Putative gag-pol polyprotein [Oryza sativa]          379  e-103
UniRef100_Q9SXF0 T3P18.3 [Arabidopsis thaliana]                       375  e-102
UniRef100_Q94IU9 Copia-like polyprotein [Arabidopsis thaliana]        375  e-102
UniRef100_Q8H7X8 Putative gag-pol polyprotein [Oryza sativa]          374  e-102
UniRef100_Q75LJ1 Putative copia-like retrotransposon protein [Or...   374  e-102
UniRef100_Q9SSB1 T18A20.5 protein [Arabidopsis thaliana]              374  e-102
UniRef100_Q75G45 Putative polyprotein [Oryza sativa]                  374  e-102
UniRef100_Q6ATL7 Putative polyprotein [Oryza sativa]                  371  e-101
UniRef100_Q94DD5 Putative gag/pol polyprotein [Oryza sativa]          371  e-101
UniRef100_O24438 Retrofit [Oryza longistaminata]                      371  e-101
UniRef100_Q8LMF6 Putative retroelement [Oryza sativa]                 370  e-101

>UniRef100_Q688L2 Putative polyprotein [Oryza sativa]
          Length = 1679

 Score =  518 bits (1335), Expect = e-145
 Identities = 252/372 (67%), Positives = 298/372 (79%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D   PD VC L KSLYGLKQAPRAWY RF +FL +IGFV +K+D SLFI   G+DT Y+L
Sbjct: 1307 DSAKPDMVCCLNKSLYGLKQAPRAWYSRFTTFLQSIGFVEAKSDTSLFILHRGNDTVYLL 1366

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDI+LT SS +L    I+AL+ EFS+ DLG L++FLGVS TR+S GL L Q +Y  D
Sbjct: 1367 LYVDDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSVTRNSAGLVLSQRQYCID 1426

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            I+ RA M +CKP  TPVDT +KLS++ G    D T +RSLAGALQYLTFTRPDISYAVQQ
Sbjct: 1427 ILERAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGALQYLTFTRPDISYAVQQ 1486

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +CL+MHDPR  H AALKRI+ YI+G+ + GLH+  S+  +L+ YSDADW GCPDTRRSTS
Sbjct: 1487 VCLHMHDPREPHLAALKRILHYIRGSVDLGLHIQRSSACDLAVYSDADWAGCPDTRRSTS 1546

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            GY V+LGDNL+SWS+KRQ T+SRSSAEAEYR VAN VAE  WLR LL ELH P S+AT+V
Sbjct: 1547 GYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVAEVTWLRQLLQELHSPPSRATLV 1606

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            YCDNVSA+YLS NPV HQRTKH+E+D+HFVRE+VA+G V VLHVPT  QYADIFTKGLP 
Sbjct: 1607 YCDNVSAVYLSSNPVQHQRTKHVEIDLHFVRERVAVGAVRVLHVPTTSQYADIFTKGLPT 1666

Query: 798  PLFDEFRSSLSI 809
            P+F EFRSSL++
Sbjct: 1667 PVFTEFRSSLNV 1678


>UniRef100_Q6ATH4 Putative polyprotein [Oryza sativa]
          Length = 1480

 Score =  506 bits (1303), Expect = e-141
 Identities = 242/376 (64%), Positives = 296/376 (78%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D + P+ VCLL+KSLYGLKQAPRAWYQRFA+++  +GF +S ++ SLF+   GD+  Y+L
Sbjct: 1098 DPSAPNAVCLLQKSLYGLKQAPRAWYQRFATYIRQLGFTSSASNTSLFVYKDGDNIAYLL 1157

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDIILT SS +L   I A L SEF++TDLG L++FLG+S TR S GLFL Q +Y  D
Sbjct: 1158 LYVDDIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQYVVD 1217

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            ++ RA M  C    TPVD +SKLSAT G    D T YRSL GALQYLT TRP+++YAVQQ
Sbjct: 1218 LLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQYLTLTRPELAYAVQQ 1277

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +CL+MHDPR  H A +KRI+RYI+GT   GLHL  + V +L+AYSDADW GCPD+ RSTS
Sbjct: 1278 VCLFMHDPREPHLALIKRILRYIKGTLHIGLHLGTTPVDSLTAYSDADWAGCPDSHRSTS 1337

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            GYCV+LGDNL+SWS+KRQ T+SRSSAEAEYR VA+ +AE CWLR LL ELH  ++ ATVV
Sbjct: 1338 GYCVFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVV 1397

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            YCDNVSA+Y++ NPV+H+RTKHIE+DIHFVREKVALGQV VLH+P+ +Q+ADI TKGLP 
Sbjct: 1398 YCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLPSSHQFADIMTKGLPV 1457

Query: 798  PLFDEFRSSLSIHPPP 813
             LF EFRSSL +   P
Sbjct: 1458 QLFTEFRSSLCVRDNP 1473


>UniRef100_Q8S1E5 Putative gag/pol polyprotein [Oryza sativa]
          Length = 1090

 Score =  506 bits (1303), Expect = e-141
 Identities = 240/376 (63%), Positives = 296/376 (77%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D   PD VCLL+KSLYGLKQAPRAWYQRFA+++  +GF+ S +D SLF+   GD   Y+L
Sbjct: 696  DPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYIRQMGFMPSASDTSLFVYKDGDRIAYLL 755

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDIILT S+ +L   + A L SEF++TDLG L++FLG+S  R   GLFL Q +YA D
Sbjct: 756  LYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLGISVKRSPDGLFLSQRQYAVD 815

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            ++ RA M  C    TPVDT +KLSAT G    D + YRS+AGALQYLT TRPD++YAVQQ
Sbjct: 816  LLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRSIAGALQYLTLTRPDLAYAVQQ 875

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +CL+MHDPR  H A +KRI+RY++G+   GLH+    + +L+AYSDADW GCP++RRSTS
Sbjct: 876  VCLFMHDPREPHLALVKRILRYVKGSLSIGLHIGSGPIQSLTAYSDADWAGCPNSRRSTS 935

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            GYCVYLGDNL+SWS+KRQ T+SRSSAEAEYR VA+ VAE CWLR LL ELH PI+ AT+V
Sbjct: 936  GYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAVAECCWLRQLLQELHVPIASATIV 995

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            YCDNVSA+Y++ NPV+H+RTKHIE+DIHFVREKVALGQV VL+VP+ +Q+ADI TKGLP 
Sbjct: 996  YCDNVSAVYMTANPVHHRRTKHIEIDIHFVREKVALGQVRVLYVPSSHQFADIMTKGLPV 1055

Query: 798  PLFDEFRSSLSIHPPP 813
             LF +FRSSL +  PP
Sbjct: 1056 QLFTDFRSSLCVRAPP 1071


>UniRef100_Q8S805 Putative copia-type polyprotein [Oryza sativa]
          Length = 1803

 Score =  499 bits (1286), Expect = e-139
 Identities = 234/374 (62%), Positives = 292/374 (77%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D   P  VCLL +SLYGL+QAPRAW++RFA   +++GFV S+ D SLF+   G DT Y+L
Sbjct: 1027 DAARPADVCLLSRSLYGLRQAPRAWFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLL 1086

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDD+IL+ SS SL   II  L++EF + D+GPL YFLG+   R + G  L QSKYA D
Sbjct: 1087 LYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATD 1146

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            ++ RA M NCK   TP D K KLS+  G  F DS+ YRS+AGALQYLT TRPDI+YAVQQ
Sbjct: 1147 VLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDIAYAVQQ 1206

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +CL+MH PR +H   LKRI+RYI+GT  FGLHL  ST   L+A+SDADW GCPDTRRSTS
Sbjct: 1207 VCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTS 1266

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G+C++LGD+LISWS+KRQ T+SRSSAEAEYRGVAN VAE  WLR LL ELHC + +AT+ 
Sbjct: 1267 GFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIA 1326

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            YCDN+S++Y+S NPV+H+RTKHIE+DIHFVREKVALG++ VL +P+ +Q+AD+FTKGLP 
Sbjct: 1327 YCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPS 1386

Query: 798  PLFDEFRSSLSIHP 811
             +F+EFR+SL + P
Sbjct: 1387 SMFNEFRASLCVAP 1400


>UniRef100_Q8W5M3 Putative gag-pol polyprotein [Oryza sativa]
          Length = 725

 Score =  489 bits (1260), Expect = e-136
 Identities = 229/372 (61%), Positives = 289/372 (77%)

Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
           D   P  VCLL +SLYGL+QAPRAW++RFA  ++++GFV S+ D SLF+   G DT Y+L
Sbjct: 303 DAARPADVCLLSRSLYGLRQAPRAWFKRFADHVTSLGFVQSRADPSLFVLRRGSDTAYLL 362

Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
           LYVDD+IL+ SS SL   II  L++EF + D+GPL YFLG+   R + G  L QSKYA +
Sbjct: 363 LYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEVQRTADGFVLSQSKYATN 422

Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
           ++ RA M NCK   TP D K KLS+  G  F DS+ YRS+ GALQYLT TRPDI+YAVQQ
Sbjct: 423 VLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSITGALQYLTLTRPDIAYAVQQ 482

Query: 618 ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
           +CL+MH PR +H   LKRI+RYI+GT  FGLHL  ST   L+A+SDADW GCPDTRRSTS
Sbjct: 483 VCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTS 542

Query: 678 GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
           G+C++LGD+LISWS+KRQ T+SRSSAEAEYRGVAN VAE  WLR LL ELHC + +AT+ 
Sbjct: 543 GFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIA 602

Query: 738 YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
           YCDN+S++Y+S NPV+H+R KHIE+DIHFVREKVALG++ VL + + +Q+AD+FTKGLP 
Sbjct: 603 YCDNISSVYMSKNPVHHKRIKHIELDIHFVREKVALGELRVLPISSAHQFADVFTKGLPS 662

Query: 798 PLFDEFRSSLSI 809
            +F+EFR+SL +
Sbjct: 663 SMFNEFRASLCV 674


>UniRef100_Q7X7W7 OSJNBa0061G20.2 protein [Oryza sativa]
          Length = 542

 Score =  488 bits (1255), Expect = e-136
 Identities = 228/380 (60%), Positives = 294/380 (77%), Gaps = 1/380 (0%)

Query: 430 HASASWIRDRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTH 489
           H  A ++ D + PD VCLL+KSLYGLKQAPRAW+QRF + L  +GFV+SK+D+SLF+   
Sbjct: 151 HQPAGFV-DPSQPDAVCLLRKSLYGLKQAPRAWFQRFGTHLHHLGFVSSKSDNSLFVLRR 209

Query: 490 GDDTTYILLYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFL 549
           G D  ++LLYVDDI+L  SS  L   II  LR EF++ DLGP+++FLG+   R + G FL
Sbjct: 210 GTDEAHLLLYVDDIVLAASSQRLLQHIINQLRVEFAMKDLGPVHFFLGIQVRRTADGFFL 269

Query: 550 HQSKYAEDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRP 609
            Q +YA D++ RA + +CKPA TP+DTK+K+S+T+G+ + D T YRS+ GALQYLT TRP
Sbjct: 270 SQEQYAGDVLDRAGLADCKPAPTPIDTKAKVSSTTGQPYSDPTFYRSIVGALQYLTLTRP 329

Query: 610 DISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGC 669
           D+SYAVQQ+CL+MH PR  H+  +KRI+RY++GT   GL L  S+  +L+AYSD DW GC
Sbjct: 330 DLSYAVQQVCLHMHSPRDVHWTLVKRILRYVRGTTHKGLQLRRSSTPSLTAYSDVDWAGC 389

Query: 670 PDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHC 729
           PDTRRSTSG+CV+ GD+  SWS+KRQ+ +SRSSAEAEYRGVAN  AE CWLR+LL ELH 
Sbjct: 390 PDTRRSTSGFCVFFGDSSESWSSKRQSVVSRSSAEAEYRGVANAAAECCWLRHLLGELHV 449

Query: 730 PISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYAD 789
            + KAT+VYCDN+SA+YLS NP++H R KH+E+D+HFVREKVA+G + V H+PTR Q AD
Sbjct: 450 KLDKATLVYCDNISAVYLSKNPLHHGRAKHVELDVHFVREKVAVGDIRVAHIPTRQQLAD 509

Query: 790 IFTKGLPKPLFDEFRSSLSI 809
           I TK LP  LF++FRSSL I
Sbjct: 510 IMTKRLPTALFEDFRSSLCI 529


>UniRef100_Q7X7N0 OSJNBa0035I04.5 protein [Oryza sativa]
          Length = 1246

 Score =  475 bits (1223), Expect = e-132
 Identities = 232/372 (62%), Positives = 282/372 (75%)

Query: 442  PDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVD 501
            PD VCLL++SLYGLKQAPRAWYQRFA+++  +GF  S +D SLFI   GD   Y+LLYVD
Sbjct: 868  PDAVCLLQRSLYGLKQAPRAWYQRFATYIRQLGFTPSASDTSLFILRDGDRLAYLLLYVD 927

Query: 502  DIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISR 561
            DIIL  SS  L   I A L +EF++TDLG L++FLG+S  R    LFL Q +YA D++ R
Sbjct: 928  DIILMASSAELLCHITARLHTEFAMTDLGDLHFFLGISVRRTPDDLFLSQRQYAVDLLQR 987

Query: 562  AKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQICLY 621
            A M    P  TPVD ++KLSA+ G    D T YRSLA ALQYLT TRP+I+YAVQQ+C +
Sbjct: 988  AGMSEYHPTATPVDARAKLSASEGAPVADPTEYRSLADALQYLTLTRPEIAYAVQQVCRF 1047

Query: 622  MHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCV 681
            MHDP   H A +KRI+RYI+G+   GLH+    V +L+AYSDADW GCPD+RRSTSGYC+
Sbjct: 1048 MHDPHEPHLALVKRIMRYIKGSLSAGLHIGTGPVGSLTAYSDADWAGCPDSRRSTSGYCI 1107

Query: 682  YLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDN 741
            +LGDNL+SWS+KRQ T+SRSSAEAEYR VA+ +AE C LR LL ELH PIS  TVV+CDN
Sbjct: 1108 FLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCCLRQLLQELHAPISTTTVVFCDN 1167

Query: 742  VSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPKPLFD 801
            VSA Y++ NPV+H+ TKHIE+DIHFVREKVALGQV VLHVP+ +Q+ D  TKGLP  LF 
Sbjct: 1168 VSAAYMTANPVHHRCTKHIEIDIHFVREKVALGQVRVLHVPSTHQFPDFMTKGLPVQLFT 1227

Query: 802  EFRSSLSIHPPP 813
            +FRSSL +  PP
Sbjct: 1228 DFRSSLCVRDPP 1239


>UniRef100_Q9SA17 F28K20.17 protein [Arabidopsis thaliana]
          Length = 1415

 Score =  386 bits (992), Expect = e-105
 Identities = 192/376 (51%), Positives = 248/376 (65%), Gaps = 2/376 (0%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D   P HVC L K++YGLKQAPRAW+  F++FL   GFV SK+D SLF+        Y+L
Sbjct: 992  DPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLL 1051

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDI+LT S  SL + ++ AL++ FS+ DLGP  YFLG+    ++ GLFLHQ+ YA D
Sbjct: 1052 LYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATD 1111

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            I+ +A M +C P  TP+    +L   + E F + T +RSLAG LQYLT TRPDI +AV  
Sbjct: 1112 ILQQAGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNF 1169

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            IC  MH P TS F  LKRI+RYI+GT   GL +  ++   LSAYSD+D  GC +TRRST+
Sbjct: 1170 ICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTT 1229

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G+C+ LG NLISWSAKRQ T+S SS EAEYR +     E  W+  LL +L  P    T V
Sbjct: 1230 GFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQV 1289

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            YCDN+SA+YLS NP  H R+KH + D H++RE+VALG +   H+   +Q AD+FTK LP+
Sbjct: 1290 YCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPR 1349

Query: 798  PLFDEFRSSLSIHPPP 813
              F + RS L +   P
Sbjct: 1350 RAFVDLRSKLGVSGSP 1365


>UniRef100_O81824 Hypothetical protein AT4g27210 [Arabidopsis thaliana]
          Length = 1318

 Score =  384 bits (987), Expect = e-105
 Identities = 185/376 (49%), Positives = 245/376 (64%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D + PDHVCLL KS+YGLKQ+PRAW+ +F++FL   GF  SK+D SLFI  H ++   +L
Sbjct: 846  DPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAHNNNLILLL 905

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDD+++T +S     +++AAL  EF +TD+G L+YFLG+   R   GLF+ Q KYAED
Sbjct: 906  LYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNGLFMSQQKYAED 965

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            ++  A M +C P  TP+  +        E F D T +RS+AG LQYLT TRPDI +AV  
Sbjct: 966  LLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNF 1025

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +C  MH P  S F  LKRI+RYI+GT   G+  S  + T L AYSD+DWG C  TRRS  
Sbjct: 1026 VCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRRSVG 1085

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G C ++G NL+SWS+K+  T+SRSS EAEY+ +++  +E  WL  LL EL  P+     +
Sbjct: 1086 GLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDTPEL 1145

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            +CDN+SA+YL+ NP  H RTKH ++D HFVRE+VAL  + V H+P   Q ADIFTK LP 
Sbjct: 1146 FCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKSLPY 1205

Query: 798  PLFDEFRSSLSIHPPP 813
              F   R  L +   P
Sbjct: 1206 EAFIHLRGKLGVTLSP 1221


>UniRef100_Q7XE22 Putative gag-pol polyprotein [Oryza sativa]
          Length = 932

 Score =  379 bits (973), Expect = e-103
 Identities = 188/374 (50%), Positives = 254/374 (67%), Gaps = 2/374 (0%)

Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
           ++  P+++C L K+LYGLKQAPRAWY R ++ L  +GF++SK D SLF    G  T +IL
Sbjct: 558 NKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFIL 617

Query: 498 LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
           +YVDDII+ +SS  +   ++  L  +F+L DLG L+YFLG+   + S GL L Q+ YA D
Sbjct: 618 VYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASD 677

Query: 558 IISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAV 615
           I+ RA M  CKPA TP+ T  KLS   G+    +D++ YRS+ GALQYLT TR D+S+ V
Sbjct: 678 ILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLV 737

Query: 616 QQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRS 675
            ++C ++H P T H++A+KRI+RYI+GT EFGL    S    +SA+SDADW GC D RRS
Sbjct: 738 NKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRS 797

Query: 676 TSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKAT 735
           T G+ V+LG NLISWSA++QAT+SRSS EAEY+ +AN   E  W+R +L EL        
Sbjct: 798 TGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVA 857

Query: 736 VVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL 795
            ++CDN+ A YLS NPV H RTKHIE+D HFVRE+VA   + +  + T  Q AD FTK L
Sbjct: 858 QLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSL 917

Query: 796 PKPLFDEFRSSLSI 809
           P P   ++R +L++
Sbjct: 918 PAPSLAQYRHNLNL 931


>UniRef100_Q9SXF0 T3P18.3 [Arabidopsis thaliana]
          Length = 1309

 Score =  375 bits (964), Expect = e-102
 Identities = 185/376 (49%), Positives = 242/376 (64%), Gaps = 2/376 (0%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D N P+HVC L K+LYGLKQAPRAW+  F++FL   GF  S +D SLF+      +  +L
Sbjct: 853  DPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNGQSLILL 912

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDI+LT S   L D ++ AL + FS+ DLGP  YFLG+    ++ GLFLHQ  YA D
Sbjct: 913  LYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIESYNNGLFLHQHAYASD 972

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            I+ +A M  C P  TP+     L   + E F++ T +RSLAG LQYLT TRPDI YAV  
Sbjct: 973  ILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNF 1030

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            IC  MH P  S F  LKRI+RY++GT   GL +       LS + D+D+ GC DTRRST+
Sbjct: 1031 ICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSGFCDSDYAGCKDTRRSTT 1090

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G+C+ LG  LISWSAKRQ T+S SS EAEYR +++   E  W+ +LL +L     + T V
Sbjct: 1091 GFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQPTRV 1150

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            +CDN+SA+YLS NP  H+R+KH + D H++RE+VALG +   H+P   Q AD+FTK LP+
Sbjct: 1151 FCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTKSLPR 1210

Query: 798  PLFDEFRSSLSIHPPP 813
              F   R+ L +   P
Sbjct: 1211 RPFITLRAKLGVSASP 1226


>UniRef100_Q94IU9 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  375 bits (964), Expect = e-102
 Identities = 185/376 (49%), Positives = 242/376 (64%), Gaps = 2/376 (0%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D N P+HVC L K+LYGLKQAPRAW+  F++FL   GF  S +D SLF+      +  +L
Sbjct: 1010 DPNKPNHVCRLTKALYGLKQAPRAWFDTFSNFLLDFGFECSTSDPSLFVCHQNGQSLILL 1069

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDI+LT S   L D ++ AL + FS+ DLGP  YFLG+    ++ GLFLHQ  YA D
Sbjct: 1070 LYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEIESYNNGLFLHQHAYASD 1129

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            I+ +A M  C P  TP+     L   + E F++ T +RSLAG LQYLT TRPDI YAV  
Sbjct: 1130 ILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGKLQYLTITRPDIQYAVNF 1187

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            IC  MH P  S F  LKRI+RY++GT   GL +       LS + D+D+ GC DTRRST+
Sbjct: 1188 ICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSGFCDSDYAGCKDTRRSTT 1247

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G+C+ LG  LISWSAKRQ T+S SS EAEYR +++   E  W+ +LL +L     + T V
Sbjct: 1248 GFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWISSLLRDLGISQHQPTRV 1307

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            +CDN+SA+YLS NP  H+R+KH + D H++RE+VALG +   H+P   Q AD+FTK LP+
Sbjct: 1308 FCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQHIPATIQLADVFTKSLPR 1367

Query: 798  PLFDEFRSSLSIHPPP 813
              F   R+ L +   P
Sbjct: 1368 RPFITLRAKLGVSASP 1383


>UniRef100_Q8H7X8 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1247

 Score =  374 bits (961), Expect = e-102
 Identities = 187/374 (50%), Positives = 249/374 (66%), Gaps = 2/374 (0%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D + P +VC L K+LYGLKQAPRAWY R +  L  +GF  SK D SLF    GD   ++L
Sbjct: 871  DSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVL 930

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            +YVDDII+T+S       ++  L+ EF+L DLG L+YFLG+  T+ SGG+ L Q KY  D
Sbjct: 931  IYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVND 990

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAV 615
            ++ R  M +CKP  TP+ T  KLS   G+    +D+T YRS+ GALQYLT TRPDI++ V
Sbjct: 991  LLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPV 1050

Query: 616  QQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRS 675
             ++C ++H P T H+AA+KRI+RY++     GL LS S    +SAYSDADW G  D RRS
Sbjct: 1051 NKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRS 1110

Query: 676  TSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKAT 735
            T G+ V+LGDNL+SWSA++QAT+SRSS E+EY+ +AN  AE  W++ LL EL        
Sbjct: 1111 TGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMA 1170

Query: 736  VVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL 795
             ++CDN+ A YLS NPV H RTKHIE+D HFVRE+V+   + +  VPT  Q AD FTK L
Sbjct: 1171 KLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKAL 1230

Query: 796  PKPLFDEFRSSLSI 809
                 + F+ +L++
Sbjct: 1231 SVRQLENFKYNLNL 1244


>UniRef100_Q75LJ1 Putative copia-like retrotransposon protein [Oryza sativa]
          Length = 1399

 Score =  374 bits (961), Expect = e-102
 Identities = 182/373 (48%), Positives = 253/373 (67%), Gaps = 2/373 (0%)

Query: 439  RNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILL 498
            ++ P++VC L K+LYGLKQAPRAWY R ++ LS +GFV SK D SLF    G  + ++L+
Sbjct: 1018 KSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLI 1077

Query: 499  YVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDI 558
            YVDDII+ +S      T++  L  +F+L DLG L+YFLG+   +   GL L Q KYA D+
Sbjct: 1078 YVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDL 1137

Query: 559  ISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQ 616
            + R  M  CKP  TP+ T  KLS   G      DST YRS+ GALQYLT TRPDIS+++ 
Sbjct: 1138 LRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSIN 1197

Query: 617  QICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRST 676
            ++C ++H P T+H+AA+KRI+RY++ T + GL    +    +S +SDADW G PD RRST
Sbjct: 1198 KVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRST 1257

Query: 677  SGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATV 736
             G+ V+LG NL+SWSA++QAT+SRSS EAEY+ +AN  AE  W++ LL EL     +A  
Sbjct: 1258 GGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAK 1317

Query: 737  VYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLP 796
            ++CDN+ A YLS NP+ H RTKHIE+D HFVRE+VA   + + ++ T+ Q AD FTK +P
Sbjct: 1318 LWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIP 1377

Query: 797  KPLFDEFRSSLSI 809
                + F+++L++
Sbjct: 1378 VRQMEMFKNNLNL 1390


>UniRef100_Q9SSB1 T18A20.5 protein [Arabidopsis thaliana]
          Length = 1522

 Score =  374 bits (960), Expect = e-102
 Identities = 179/385 (46%), Positives = 250/385 (64%), Gaps = 9/385 (2%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D++ PDHVCLL KSLYGLKQ+PRAW+ RF++FL   GF+ S  D SLF+ +  +D   +L
Sbjct: 1048 DKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLL 1107

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDD+++T ++      ++AAL  EF + D+G ++YFLG+    + GGLF+ Q KYAED
Sbjct: 1108 LYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAED 1167

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            ++  A M NC P  TP+  +    +   E F D T +RSLAG LQYLT TRPDI +AV  
Sbjct: 1168 LLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNF 1227

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVT---------NLSAYSDADWGG 668
            +C  MH P  S F  LKRI+RYI+GT   G+  + ++ +         +LSAYSD+D+  
Sbjct: 1228 VCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSSVVSAYESDYDLSAYSDSDYAN 1287

Query: 669  CPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELH 728
            C +TRRS  GYC ++G N+ISWS+K+Q T+SRSS EAEYR ++   +E  W+ ++L E+ 
Sbjct: 1288 CKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIG 1347

Query: 729  CPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYA 788
              +     ++CDN+SA+YL+ NP  H RTKH ++D H++RE+VAL  + V H+P   Q A
Sbjct: 1348 VSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLA 1407

Query: 789  DIFTKGLPKPLFDEFRSSLSIHPPP 813
            DIFTK LP   F   R  L +  PP
Sbjct: 1408 DIFTKSLPFEAFTRLRFKLGVDFPP 1432


>UniRef100_Q75G45 Putative polyprotein [Oryza sativa]
          Length = 1431

 Score =  374 bits (959), Expect = e-102
 Identities = 186/368 (50%), Positives = 252/368 (67%), Gaps = 2/368 (0%)

Query: 444  HVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVDDI 503
            +VC L K+LYGLKQAPRAWY R ++ L  +GF +SK+D SLF  + GD   ++L+YVDDI
Sbjct: 1060 YVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDI 1119

Query: 504  ILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAK 563
            I+ +SS    + ++  L  EF+L DLG L+YFLG+     + G+ L Q KYA D++ R  
Sbjct: 1120 IVASSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVN 1179

Query: 564  MVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQQICLY 621
            M +CK   TP+    KLSA  G  F  +DST YRSL GALQYLT TRPD+S++V ++C Y
Sbjct: 1180 MSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQY 1239

Query: 622  MHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCV 681
            +H P T H+AA KRI+RY++ T + GL +S S    +SA+SDADW GC D R ST G+ V
Sbjct: 1240 LHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAV 1299

Query: 682  YLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDN 741
            ++G NL+SWSA++QAT+SRSS EAEY+ +ANV AE  W++ LL EL     K   V+CDN
Sbjct: 1300 FIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDN 1359

Query: 742  VSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPKPLFD 801
            + A Y++ NPV H RTKHIE+D HFVRE+VA   + V ++ T+ Q AD FTK L     +
Sbjct: 1360 IGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLE 1419

Query: 802  EFRSSLSI 809
             FR++L++
Sbjct: 1420 MFRNNLNL 1427


>UniRef100_Q6ATL7 Putative polyprotein [Oryza sativa]
          Length = 1437

 Score =  371 bits (953), Expect = e-101
 Identities = 185/372 (49%), Positives = 248/372 (65%), Gaps = 2/372 (0%)

Query: 440  NNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLY 499
            + PD+VC L K+LYGLKQAPRAWY R +  L  +GF  SK D SLF    G  T ++L+Y
Sbjct: 1057 STPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIY 1116

Query: 500  VDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDII 559
            VDDII+ +S       ++  L+ EF+L DLG L+YFLG+  T+  GG+ + Q KYA D++
Sbjct: 1117 VDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLL 1176

Query: 560  SRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
             R  M +CK   TP+    KL A  G     +D+T YRS+ GALQYLT TR DI+++V +
Sbjct: 1177 KRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNK 1236

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +C ++H+P T H+AA+KRI+RYI+     GL +  S+   +S YSDADW GC D RRST 
Sbjct: 1237 VCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDDRRSTG 1296

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G+ VYLGDNL+SW+AK+QAT+SRSS EAEY+ +AN  AE  W++ LL EL+        +
Sbjct: 1297 GFAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQL 1356

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            +CDN+ A YLS NPV H RTKHIE+D HFVRE+VA   + V +V T  Q AD FTK LP 
Sbjct: 1357 WCDNMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPV 1416

Query: 798  PLFDEFRSSLSI 809
               + F+ +L++
Sbjct: 1417 KQLENFKYNLNL 1428


>UniRef100_Q94DD5 Putative gag/pol polyprotein [Oryza sativa]
          Length = 1449

 Score =  371 bits (952), Expect = e-101
 Identities = 186/374 (49%), Positives = 248/374 (65%), Gaps = 2/374 (0%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D + P +VC L K+LYGLKQAPRAWY R +  L  +GF  SK D SLF    GD   ++L
Sbjct: 1073 DSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVL 1132

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            +YVDDII+T+S       ++  L+ EF+L DLG L+YFLG+  T+ SGG+ L Q KY  D
Sbjct: 1133 IYVDDIIVTSSRQEAVPALLQDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVND 1192

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAV 615
            ++ R  M +CKP  TP+ T  KLS   G+    +D+T YRS+ GALQYLT TRPDI++ V
Sbjct: 1193 LLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPV 1252

Query: 616  QQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRS 675
             ++C ++H P T H+AA+KRI+RY++     GL LS S    +SA SDADW G  D RRS
Sbjct: 1253 NKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSACSDADWAGSLDDRRS 1312

Query: 676  TSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKAT 735
            T G+ V+LGDNL+SWSA++QAT+SRSS E+EY+ +AN  AE  W++ LL EL        
Sbjct: 1313 TGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMA 1372

Query: 736  VVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGL 795
             ++CDN+ A YLS NPV H RTKHIE+D HFVRE+V+   + +  VPT  Q AD FTK L
Sbjct: 1373 KLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKAL 1432

Query: 796  PKPLFDEFRSSLSI 809
                 + F+ +L++
Sbjct: 1433 SVRQLENFKYNLNL 1446


>UniRef100_O24438 Retrofit [Oryza longistaminata]
          Length = 1445

 Score =  371 bits (952), Expect = e-101
 Identities = 183/372 (49%), Positives = 244/372 (65%), Gaps = 2/372 (0%)

Query: 440  NNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLY 499
            + PD+VC L K+LYGLKQAPRAWY R +  L  +GF  SK D SLF    G    ++L+Y
Sbjct: 1071 SKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVY 1130

Query: 500  VDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDII 559
            VDDII+ +S+      ++  L  EF+L DLG L+YFLG+  T+ S G+ L Q KYA D++
Sbjct: 1131 VDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLL 1190

Query: 560  SRAKMVNCKPALTPVDTKSKLSATSGEKF--DDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
             R  M NCKP  TP+    KL+   G     +D+  YRS+ GALQYLT TRPDI+Y+V +
Sbjct: 1191 KRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNK 1250

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +C ++H P TSH+ A+KRI+RY+      GLH+  S  T +  YSDADW G  D R+ST 
Sbjct: 1251 VCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTG 1310

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVV 737
            G+ V+LG NL+SWSA++Q T+SRSS EAEY+ VAN  AE  W++ LL EL     KA  +
Sbjct: 1311 GFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKI 1370

Query: 738  YCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTKGLPK 797
            +CDN+ A YLS NPV H RTKHIE+D HFVRE+V+   + +  VP+  Q AD FTK L  
Sbjct: 1371 WCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSA 1430

Query: 798  PLFDEFRSSLSI 809
             L + F+ +L++
Sbjct: 1431 CLLENFKHNLNL 1442


>UniRef100_Q8LMF6 Putative retroelement [Oryza sativa]
          Length = 1250

 Score =  370 bits (950), Expect = e-101
 Identities = 178/283 (62%), Positives = 218/283 (76%)

Query: 438  DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
            D + P  VCLL+KSLYGLKQAPRAWYQRFA+++  +GF +S +D SLFI   GD+  Y+L
Sbjct: 968  DPSEPTAVCLLQKSLYGLKQAPRAWYQRFATYIRQLGFTSSASDTSLFIYKDGDNVAYLL 1027

Query: 498  LYVDDIILTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAED 557
            LYVDDI+LT SS SL   I A L SEF++TDLG L++FLG+S TR + GLFL Q +YA D
Sbjct: 1028 LYVDDILLTASSTSLLQHITARLHSEFAMTDLGDLHFFLGISVTRSADGLFLSQWQYAVD 1087

Query: 558  IISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQ 617
            ++ RA M  C P  TPVD + KLSAT G    D   YRSLAGALQYLT TRP+I+YA+QQ
Sbjct: 1088 LLRRAGMSECHPTATPVDARCKLSATDGAPVSDPMEYRSLAGALQYLTLTRPEIAYAIQQ 1147

Query: 618  ICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTS 677
            +CL+MHDPR  H A +KRI+RYI+GT    LH+  + V +L+AYSDADW GCPD+R STS
Sbjct: 1148 VCLFMHDPREPHLALVKRILRYIKGTLHICLHIGTAPVDSLTAYSDADWVGCPDSRHSTS 1207

Query: 678  GYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWL 720
            GYCV+LG+NL+SWS+KRQ T+SRSSAEAEYR VA+ VAE CWL
Sbjct: 1208 GYCVFLGENLVSWSSKRQTTVSRSSAEAEYRAVAHAVAECCWL 1250


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.333    0.143    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,298,661,132
Number of Sequences: 2790947
Number of extensions: 52639764
Number of successful extensions: 169513
Number of sequences better than 10.0: 1446
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 166506
Number of HSP's gapped (non-prelim): 1818
length of query: 813
length of database: 848,049,833
effective HSP length: 136
effective length of query: 677
effective length of database: 468,481,041
effective search space: 317161664757
effective search space used: 317161664757
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 79 (35.0 bits)