BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q98LN6 Mll0950 protein [Rhizobium loti] 36 0.23
UniRef100_Q7U159 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 36 0.30
UniRef100_Q7U2D7 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 35 0.39
UniRef100_Q7U079 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 35 0.39
UniRef100_Q10637 Hypothetical PE-PGRS family protein PE_PGRS24 p... 35 0.39
UniRef100_Q6MWY0 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 34 1.1
UniRef100_Q8VJ23 PE_PGRS family protein [Mycobacterium tuberculo... 34 1.1
UniRef100_Q7U1D3 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 33 1.5
UniRef100_Q7TWC3 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 33 1.5
UniRef100_Q7U049 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 33 2.0
UniRef100_P71664 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 33 2.0
UniRef100_UPI0000430BB7 UPI0000430BB7 UniRef100 entry 33 2.6
UniRef100_Q6MWX5 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 33 2.6
UniRef100_Q7U1Q7 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 33 2.6
UniRef100_Q7TWK6 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis] 33 2.6
UniRef100_Q6MX28 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculo... 33 2.6
UniRef100_Q8VJ15 PE_PGRS family protein [Mycobacterium tuberculo... 33 2.6
UniRef100_Q7D9L6 PE_PGRS family protein [Mycobacterium tuberculo... 33 2.6
UniRef100_UPI00003AC983 UPI00003AC983 UniRef100 entry 32 3.3
UniRef100_UPI000000CA8D UPI000000CA8D UniRef100 entry 32 3.3
>UniRef100_Q98LN6 Mll0950 protein [Rhizobium loti]
Length = 3659
Score = 36.2 bits (82), Expect = 0.23
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLR---DGIVGIFVGRLGSGG-IVSLGIEGIV-------G 51
G G G+ G +VT N G +R +G VGIF +G GG +V+ G +GIV G
Sbjct: 2866 GGDTGATGK-GGDVTVTNTGQIRLTGNGSVGIFAQSVGGGGGVVTAGTDGIVQAVAGGSG 2924
Query: 52 NGG 54
NGG
Sbjct: 2925 NGG 2927
>UniRef100_Q7U159 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 831
Score = 35.8 bits (81), Expect = 0.30
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G G+ G GG+ I+GI +G G G +LG+ G+ GNGG
Sbjct: 727 GTGGNGGAGGGGGLSSPVILGIGIGGAGGNGGDALGLVGVGGNGG 771
>UniRef100_Q7U2D7 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 877
Score = 35.4 bits (80), Expect = 0.39
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVG-IFVGRLGSGGIVSLGIEGIVGNGG 54
G + G G GS T NGG DG G IF G G+GG +G G G+GG
Sbjct: 522 GWLFGNGGNGGSGATGTNGGDGGDGGAGGIFFGTGGTGGAGGVGTTGTGGDGG 574
Score = 33.9 bits (76), Expect = 1.1
Identities = 19/52 (36%), Positives = 26/52 (49%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G ++G G GS NGG +G G +G G+GG + GI G+GG
Sbjct: 133 GWLIGNGGAGGSGAAGVNGGAGGNGGAGGLIGNGGAGGAGGVASSGIGGSGG 184
Score = 32.0 bits (71), Expect = 4.4
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
G+ G G+ GNGG+ G G G+GG + G G GNGG F
Sbjct: 648 GLGGDAGTGGAGGNGGLFGAGGTG------GAGGSLGPGAGGAGGNGGLF 691
>UniRef100_Q7U079 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 603
Score = 35.4 bits (80), Expect = 0.39
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
G G G TAG+GG G G+ G G+GG LGI G GNGG+
Sbjct: 485 GAGGAGGFGETAGDGGA--GGNAGLLNGDGGAGGAGGLGIAGDGGNGGK 531
>UniRef100_Q10637 Hypothetical PE-PGRS family protein PE_PGRS24 precursor
[Mycobacterium tuberculosis]
Length = 603
Score = 35.4 bits (80), Expect = 0.39
Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGR 55
G G G TAG+GG G G+ G G+GG LGI G GNGG+
Sbjct: 485 GAGGAGGFGETAGDGGA--GGNAGLLNGDGGAGGAGGLGIAGDGGNGGK 531
>UniRef100_Q6MWY0 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis]
Length = 1538
Score = 33.9 bits (76), Expect = 1.1
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRL----GSGGIVSLGIEGIVGNGG 54
+G EGR T GNGG DG GI +G G+GG+ G G GNGG
Sbjct: 1114 IGGEGR-----TGGNGGSGGDGGGGISLGGNGGLGGNGGVSETGFGGAGGNGG 1161
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSL-GIEGIVGNGG 54
G G+ T GNGG + VG G+ G+G + L G +GI NGG
Sbjct: 917 GTVGNPGTGGNGGNGGNAGVGGTGGKAGTGSLTGLDGTDGITPNGG 962
>UniRef100_Q8VJ23 PE_PGRS family protein [Mycobacterium tuberculosis]
Length = 1507
Score = 33.9 bits (76), Expect = 1.1
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRL----GSGGIVSLGIEGIVGNGG 54
+G EGR T GNGG DG GI +G G+GG+ G G GNGG
Sbjct: 1077 IGGEGR-----TGGNGGSGGDGGGGISLGGNGGLGGNGGVSETGFGGAGGNGG 1124
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 10 GRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSL-GIEGIVGNGG 54
G G+ T GNGG + VG G+ G+G + L G +GI NGG
Sbjct: 943 GTVGNPGTGGNGGNGGNAGVGGTGGKAGTGSLTGLDGTDGITPNGG 988
Score = 32.0 bits (71), Expect = 4.4
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 6/56 (10%)
Query: 3 GKVVGIEGRFGSEVTAGNG--GMLRDGIVGIFVGRLGSGGIVSLGIE--GIVGNGG 54
G + G++G G GNG GM+ G+ G G G GG V + G GNGG
Sbjct: 972 GSLTGLDGTDGITPNGGNGGAGMINGGLGGF--GGAGGGGAVDVAATTGGAGGNGG 1025
>UniRef100_Q7U1D3 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 909
Score = 33.5 bits (75), Expect = 1.5
Identities = 20/49 (40%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI-VSLGIEGIVGNGG 54
G G G+ G+GG G G+ +G GSGG +LG GI G GG
Sbjct: 427 GNGGNGGASTGGGDGGPGGAGGTGVLIGNGGSGGTGATLGKAGIGGTGG 475
>UniRef100_Q7TWC3 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 1460
Score = 33.5 bits (75), Expect = 1.5
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 7 GIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIV-SLGIEGIVGNGGR 55
G G G+ T G GG G G VG G+GG+V +G GI G GG+
Sbjct: 529 GAGGTGGAGGTGGTGGAAGAGGAGGAVGTGGTGGVVGDVGNAGIGGTGGK 578
>UniRef100_Q7U049 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 452
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI---VSLGIEGIVGNGG 54
G G G G + T GNGG +G + +G G GG G +G GNGG
Sbjct: 371 GGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAGNDGTPGNGG 425
>UniRef100_P71664 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis]
Length = 576
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGI---VSLGIEGIVGNGG 54
G G G G + T GNGG +G + +G G GG G +G GNGG
Sbjct: 495 GGTGGKGGTAGEDGTGGNGGTGGNGGAAVLIGNGGGGGAGGNGGAGNDGTPGNGG 549
>UniRef100_UPI0000430BB7 UPI0000430BB7 UniRef100 entry
Length = 92
Score = 32.7 bits (73), Expect = 2.6
Identities = 22/62 (35%), Positives = 31/62 (49%), Gaps = 9/62 (14%)
Query: 3 GKVVGIEGRFGSEVTAGN--------GGMLRDGIVGIFVGRLGSGGI-VSLGIEGIVGNG 53
G+V+G +G G VT G+ GG + G G +VG +G G + G G +G G
Sbjct: 31 GRVIGGDGGEGGRVTGGDGGEGGRVIGGCVTGGEGGKYVGPVGGGRVGGGCGDGGRLGEG 90
Query: 54 GR 55
GR
Sbjct: 91 GR 92
>UniRef100_Q6MWX5 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis]
Length = 731
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG-IVGNGG 54
G G+ G+ G+ + G+GG +G G G G+GG ++G ++GNGG
Sbjct: 664 GAAGGLAGQIGNGGSGGSGGAGGNGGTGDTAGNGGNGGAGAVGGNAQLIGNGG 716
Score = 32.0 bits (71), Expect = 4.4
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-----IEGIVGNGG 54
G G G G+ +AG GG+ G G G +G+GG G G VGNGG
Sbjct: 388 GGAAGAGGNGGNNTSAGTGGVGASGGTGGNAGLIGAGGHGGAGGAGGNQTGGVGNGG 444
>UniRef100_Q7U1Q7 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 1306
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/52 (36%), Positives = 25/52 (47%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G G+ AGNGG+ G +G G G+GG+ G V GG
Sbjct: 1144 GSTLGATGATGAAGRAGNGGVGGSGGLGSAFGPGGTGGMGGAGGTSTVSAGG 1195
>UniRef100_Q7TWK6 PE-PGRS FAMILY PROTEIN [Mycobacterium bovis]
Length = 749
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG-IVGNGG 54
G G+ G+ G+ + G+GG +G G G G+GG ++G ++GNGG
Sbjct: 656 GAAGGLAGQIGNGGSGGSGGAGGNGGTGDTAGNGGNGGAGAVGGNAQLIGNGG 708
Score = 32.0 bits (71), Expect = 4.4
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-----IEGIVGNGG 54
G G G G+ +AG GG+ G G G +G+GG G G VGNGG
Sbjct: 380 GGAAGAGGNGGNNTSAGTGGVGASGGTGGNAGLIGAGGHGGAGGAGGNQTGGVGNGG 436
>UniRef100_Q6MX28 PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis]
Length = 1306
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/52 (36%), Positives = 25/52 (47%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G G+ AGNGG+ G +G G G+GG+ G V GG
Sbjct: 1144 GSTLGATGATGAAGRAGNGGVGGSGGLGSAFGPGGTGGMGGAGGTSTVSAGG 1195
>UniRef100_Q8VJ15 PE_PGRS family protein [Mycobacterium tuberculosis]
Length = 775
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEG-IVGNGG 54
G G+ G+ G+ + G+GG +G G G G+GG ++G ++GNGG
Sbjct: 708 GAAGGLAGQIGNGGSGGSGGAGGNGGTGDTAGNGGNGGAGAVGGNAQLIGNGG 760
Score = 32.0 bits (71), Expect = 4.4
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG-----IEGIVGNGG 54
G G G G+ +AG GG+ G G G +G+GG G G VGNGG
Sbjct: 432 GGAAGAGGNGGNNTSAGTGGVGASGGTGGNAGLIGAGGHGGAGGAGGNQTGGVGNGG 488
>UniRef100_Q7D9L6 PE_PGRS family protein [Mycobacterium tuberculosis]
Length = 1306
Score = 32.7 bits (73), Expect = 2.6
Identities = 19/52 (36%), Positives = 25/52 (47%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G +G G G+ AGNGG+ G +G G G+GG+ G V GG
Sbjct: 1144 GSTLGATGATGAAGRAGNGGVGGSGGLGSAFGPGGTGGMGGAGGTSTVSAGG 1195
>UniRef100_UPI00003AC983 UPI00003AC983 UniRef100 entry
Length = 735
Score = 32.3 bits (72), Expect = 3.3
Identities = 20/52 (38%), Positives = 22/52 (41%)
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G + G G GS AG GG G G G G GG G G G+GG
Sbjct: 502 GGMGGGFGAGGSGFGAGYGGGFGSGSAGFSAGSFGGGGFAGGGSSGGHGHGG 553
>UniRef100_UPI000000CA8D UPI000000CA8D UniRef100 entry
Length = 688
Score = 32.3 bits (72), Expect = 3.3
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 8 IEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
+E FG ++ G+ G++ G GI VG G G+V G GIVGNG
Sbjct: 316 VEASFG--ISGGDSGIIDTGDSGI-VGN-GESGLVGTGDSGIVGNG 357
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,117,114
Number of Sequences: 2790947
Number of extensions: 4262559
Number of successful extensions: 13750
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 12944
Number of HSP's gapped (non-prelim): 833
length of query: 56
length of database: 848,049,833
effective HSP length: 32
effective length of query: 24
effective length of database: 758,739,529
effective search space: 18209748696
effective search space used: 18209748696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144517.14