BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144477.8 + phase: 0 /pseudo
(879 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sat... 284 7e-75
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 281 5e-74
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 268 5e-70
UniRef100_Q7XGD3 Putative retroelement [Oryza sativa] 263 1e-68
UniRef100_Q8S5K1 Putative retroelement [Oryza sativa] 263 1e-68
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 261 5e-68
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 261 6e-68
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 261 6e-68
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 261 6e-68
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip... 261 8e-68
UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcrip... 255 4e-66
UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa] 254 1e-65
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 252 3e-65
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 252 4e-65
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 251 5e-65
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 250 1e-64
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 250 1e-64
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip... 249 2e-64
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 246 2e-63
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 246 3e-63
>UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sativa]
Length = 1264
Score = 284 bits (727), Expect = 7e-75
Identities = 135/297 (45%), Positives = 191/297 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R I N + A E+ HY+ + KGK G A+KLD+SK YD ++W +LR +M ++ F
Sbjct: 887 AFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGF 946
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
DQWV +M CV +V Y + +NG+ QI P RGLRQGDPLSPYLFIIC EGLSAL++K
Sbjct: 947 HDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKA 1006
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+A G+I G+K+C + P I+HL FADD + R + A ++R +L+ YE A GQ +N K
Sbjct: 1007 QADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDK 1066
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S N L + + S L + +YLGLP IG+S++ F +IK ++W +I
Sbjct: 1067 SSVLFSPNTLQSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQG 1126
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
W K LSKAG+E+L+K V Q+IPTY MS F LCDEI +++ +WW + +++
Sbjct: 1127 WQEKLLSKAGKEILVKAVAQAIPTYAMSCFDLTKGLCDEINSMISKWWWSQNDKENK 1183
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 281 bits (720), Expect = 5e-74
Identities = 134/291 (46%), Positives = 184/291 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E+ HYM++K G+ G A KLD+SK YD ++WS+L +M K+ F
Sbjct: 740 AFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGF 799
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
WV IM CV TV Y + VNG++ P RGLRQGDPLSPYLF++C EG SAL+ K
Sbjct: 800 HTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKT 859
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E G ++G++IC AP +SHLLFADD + R N +A +++ IL YE GQ +N K
Sbjct: 860 EEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDK 919
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S N + + + L +Q KYLGLP +GRS+ FS++K+RIW++I
Sbjct: 920 SAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQG 979
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGH 349
W K LS+AG+E+LIK V Q IPT+ M F LCD+I +++ +WW +
Sbjct: 980 WKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSN 1030
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 268 bits (685), Expect = 5e-70
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E+ H +++ K A+K D+SK YD ++W+++ ++ KM F
Sbjct: 323 AFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGF 382
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM C+ TV Y VL+NG IIP RGLRQGDPLSPYLFI+C E L A +RK
Sbjct: 383 CEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKA 442
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E + I G+K+ +P +SHLLFADD F + N +Q + IL YE GQ +N K
Sbjct: 443 ERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSK 502
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V ++ +I ILG+ + G G YLGLP +G SK FSF++DR+ +IN
Sbjct: 503 SSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRING 562
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS+K LSK G+EV+IK V ++P Y MS F P ++ ++ + FWW S G SRG+
Sbjct: 563 WSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWS-SNGDSRGM 620
>UniRef100_Q7XGD3 Putative retroelement [Oryza sativa]
Length = 1694
Score = 263 bits (673), Expect = 1e-68
Identities = 132/314 (42%), Positives = 186/314 (59%), Gaps = 3/314 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H+++ + A KLD+SK YD +DW +L M K+ F
Sbjct: 1153 AFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGF 1212
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ WVKWIM C+ V Y V +NG +++ P RGLRQGDPLSP+LF+ +GLS L+ +
Sbjct: 1213 AHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEK 1272
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+G +N + IC +AP + HLLFADD LFF+ DQA M+ +L TY GQ +N K
Sbjct: 1273 VDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSK 1332
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
I ++ T V N I L + KYLG P+ GR K F +++R+WK+I L
Sbjct: 1333 CSIMFGQSSPTAVQNQIKQTLQISNSF-EDKYLGFPTPEGRMTKGKFQSLQERLWKRIML 1391
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W K LS G+E+LIK VLQ++P Y M LF P S+C+E+ +++ +FWWG G R T
Sbjct: 1392 WGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRR--T 1449
Query: 359 GFLGINCLCTRMME 372
+ +CL + ++
Sbjct: 1450 HWKSWDCLIAQKLK 1463
>UniRef100_Q8S5K1 Putative retroelement [Oryza sativa]
Length = 1888
Score = 263 bits (673), Expect = 1e-68
Identities = 132/314 (42%), Positives = 186/314 (59%), Gaps = 3/314 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H+++ + A KLD+SK YD +DW +L M K+ F
Sbjct: 1110 AFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGF 1169
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ WVKWIM C+ V Y V +NG +++ P RGLRQGDPLSP+LF+ +GLS L+ +
Sbjct: 1170 AHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEK 1229
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+G +N + IC +AP + HLLFADD LFF+ DQA M+ +L TY GQ +N K
Sbjct: 1230 VDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSK 1289
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
I ++ T V N I L + KYLG P+ GR K F +++R+WK+I L
Sbjct: 1290 CSIMFGQSSPTAVQNQIKQTLQISNSF-EDKYLGFPTPEGRMTKGKFQSLQERLWKRIML 1348
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W K LS G+E+LIK VLQ++P Y M LF P S+C+E+ +++ +FWWG G R T
Sbjct: 1349 WGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGMRR--T 1406
Query: 359 GFLGINCLCTRMME 372
+ +CL + ++
Sbjct: 1407 HWKSWDCLIAQKLK 1420
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 261 bits (668), Expect = 5e-68
Identities = 126/289 (43%), Positives = 180/289 (61%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR+I DN + EI+H+++ K A+K D+SK YD I W++L+ V+ ++ F
Sbjct: 480 AFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGF 539
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
D+W++W+M CV TV+Y L+NG ++P RGLRQGDPLSPYLFI+C E LS L RK
Sbjct: 540 HDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKA 599
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ +G + G+++ +P ++HLLFADD F +TN + IL YE A GQ++NL K
Sbjct: 600 QEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAK 659
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I S + + L + G GKYLGLP GR K+ FS I DRI ++ +
Sbjct: 660 SAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHS 719
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS + LS AG+++L+K VL S+P+Y M F P SLC +I+ ++ FWW
Sbjct: 720 WSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWW 768
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 261 bits (667), Expect = 6e-68
Identities = 125/289 (43%), Positives = 184/289 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR + DN M A E++H +K++ + + A+K D+SK YD ++W++L M F
Sbjct: 901 AFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGF 960
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W+KWIM V++VNY VLVNG I P RG+RQGDPLSPYLFI+C + L+ L++
Sbjct: 961 SETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNR 1020
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A G+I G++I N P ++HL FADD F ++NV ++ + YE GQ +N+ K
Sbjct: 1021 VAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1080
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V T N + +ILG+Q G GKYLGLP GR K+ F++I +R+ K+ +
Sbjct: 1081 SMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSS 1140
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS+K LS AG+E+++K V S+P Y MS F P+++ EIE ++ +FWW
Sbjct: 1141 WSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW 1189
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 261 bits (667), Expect = 6e-68
Identities = 127/302 (42%), Positives = 187/302 (61%), Gaps = 3/302 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV G++I DN + A E++H +KS+ + + G A+K DISK YD ++W++L VM ++ F
Sbjct: 901 AFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGF 960
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ +WVKWIM CV +V+Y VL+NG +I P RG+RQGDPLSPYLF+ C E LS ++RK
Sbjct: 961 APRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKA 1020
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E +I+G+KI + ISHLLFADD F R + ++ I YE A GQ +N K
Sbjct: 1021 EVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAK 1080
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I + + T + +LG+ V G GKYLGLP +GR K F +I ++ ++
Sbjct: 1081 SSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEG 1140
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGLT 358
W+ LS AG+E++IK + ++P Y M+ F P +C+EI ++ +FWWG ++ G
Sbjct: 1141 WAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGK---ENEGDL 1197
Query: 359 GF 360
GF
Sbjct: 1198 GF 1199
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 261 bits (667), Expect = 6e-68
Identities = 125/289 (43%), Positives = 184/289 (63%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR + DN M A E++H +K++ + + A+K D+SK YD ++W++L M F
Sbjct: 921 AFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGF 980
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S+ W+KWIM V++VNY VLVNG I P RG+RQGDPLSPYLFI+C + L+ L++
Sbjct: 981 SETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNR 1040
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A G+I G++I N P ++HL FADD F ++NV ++ + YE GQ +N+ K
Sbjct: 1041 VAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSK 1100
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V T N + +ILG+Q G GKYLGLP GR K+ F++I +R+ K+ +
Sbjct: 1101 SMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSS 1160
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
WS+K LS AG+E+++K V S+P Y MS F P+++ EIE ++ +FWW
Sbjct: 1161 WSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWW 1209
>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1382
Score = 261 bits (666), Expect = 8e-68
Identities = 123/297 (41%), Positives = 184/297 (61%), Gaps = 1/297 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I D+ + A E +H ++ K K FALK+D+ K YD ++W+YL G ++K+ F
Sbjct: 555 AFVPGRLITDSALVAYECLHTIR-KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGF 613
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
S W+ +M CV +V Y V +NG++ ++P RG+RQGDP+SPYLF++C EGLS L+ K
Sbjct: 614 SQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKK 673
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E GE+ G+K + P ISHLLFADD F + + ++ L +Y A GQ +NL K
Sbjct: 674 EVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHK 733
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S IF + V ++ S L V + YLG+P+ IG + + F F+ +RIWK++N
Sbjct: 734 SSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNG 793
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
W+ + LS+AG E ++K V Q+IP Y MS F PVS+C++++ + WWG G+ +
Sbjct: 794 WTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKK 850
>UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 255 bits (652), Expect = 4e-66
Identities = 130/297 (43%), Positives = 177/297 (58%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R+ DN + E +HY+KS K+ A+K ++SK YD I+W +++ VM +M F
Sbjct: 365 AFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGF 424
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
W+ WI+ C+ TV+Y L+NG + P RGLRQGDPLSP+LFIIC E LS L RK
Sbjct: 425 HQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKA 484
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G + G+++ P ++HLLFADD F R+++ IL YE A GQ +N K
Sbjct: 485 QLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSK 544
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I SR + ILG+Q+V G GKYLGLP M GR K+ F+ I DRI ++
Sbjct: 545 SAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLS 604
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
WSS+ LS AG+ ++K VL S+PTY MS F VSLC I+ + FWW S + +
Sbjct: 605 WSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKK 661
>UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]
Length = 1205
Score = 254 bits (648), Expect = 1e-65
Identities = 124/297 (41%), Positives = 181/297 (60%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H + + + ALKLD+SK YD +DW +L G + K+ F
Sbjct: 527 AFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGF 586
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ W KWIM CV +V Y V +NG+++ P RGLR+GDPL+PYLF+ +GLS ++++
Sbjct: 587 GNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRR 646
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+I +K+C +AP +SHLLFADD LFF+ V QA++++ L YER GQ +N ++
Sbjct: 647 RDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKE 706
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
+ S + I ++L V+ K LGLP+ GR K F IK+R K++
Sbjct: 707 CSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTD 766
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
WS + LS AG+E LIK V Q++PTY M +F P C+E E+++ +FWWGH G+ +
Sbjct: 767 WSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKK 823
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 252 bits (644), Expect = 3e-65
Identities = 128/299 (42%), Positives = 182/299 (60%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E++H + S K + A+K DISK YD ++W +L M + F
Sbjct: 539 AFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGF 598
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+D W++ IM CV++V Y VL+NG +IIP RGLRQGDPLSPYLF+IC E L +++
Sbjct: 599 ADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSA 658
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E + +I G+K+ AP ISHLLFADD + + N + ++ I+ Y A GQ VN K
Sbjct: 659 EQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I+ +++ + LG++ G G YLGLP SK +T S++KDR+ KK+
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLG 778
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
W S LS G+E+L+K V ++PTY MS F P ++C +IE +M FWW + + RGL
Sbjct: 779 WQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNK-KEGRGL 836
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 252 bits (643), Expect = 4e-65
Identities = 121/285 (42%), Positives = 181/285 (63%), Gaps = 1/285 (0%)
Query: 66 ILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRFSDQWVKW 125
I DN + A E+IH + +K K + A KLDI+K +D I+W ++ +M +M FS++W W
Sbjct: 2 ITDNILIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 126 IMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKDEARGEIN 185
IM C+ T Y +L+NG + +IIP RG+RQGDP+SPYL+++C EGLSAL++ +++
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 186 GVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQKSEIFCSR 245
G K N P ISHLLFA D +F + +++ + +L YE+A GQAVN QKS I +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 246 NVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINLWSSKSLS 305
+ ++ +LG+ G G+YLGLP +GR+K + FSFI + +K++ W +K LS
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 306 KAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHS 350
AG+EVLIK ++ +IPTY MS F P+ L +I M FWW ++
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNT 285
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 251 bits (642), Expect = 5e-65
Identities = 127/299 (42%), Positives = 179/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A EI+H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 160 AFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 219
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
D+W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L++
Sbjct: 220 CDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVK 279
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G+I GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 280 ASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 339
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + ++L + G GKYLGLP GR KK F++I DR+ ++
Sbjct: 340 SLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTAS 399
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS+K LS AG+E+L+K V ++P Y MS F P + EIE ++ +FWW RG+
Sbjct: 400 WSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWW-EKASNKRGI 457
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 250 bits (638), Expect = 1e-64
Identities = 125/299 (41%), Positives = 180/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A E++H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 921 AFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 980
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L+
Sbjct: 981 CNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGR 1040
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G++ GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 1041 ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 1100
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + + IL + G GKYLGLP GR KK F +I DR+ K+ +
Sbjct: 1101 SMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTST 1160
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS++ LS AG+E+++K V ++P Y MS F P + EIE ++ +FWW + Q RG+
Sbjct: 1161 WSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGI 1218
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 250 bits (638), Expect = 1e-64
Identities = 125/299 (41%), Positives = 180/299 (59%), Gaps = 1/299 (0%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AF+ GR I DN M A E++H +K + + K A+K D+SK YD ++W +L M F
Sbjct: 695 AFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGF 754
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
++W+ WIM V++V+Y VL+NG I P RG+RQGDPLSPYLFI+C + LS L+
Sbjct: 755 CNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGR 814
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ G++ GV+I N AP I+HL FADD F + NV ++ + YE GQ +N+QK
Sbjct: 815 ASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQK 874
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I V + + + IL + G GKYLGLP GR KK F +I DR+ K+ +
Sbjct: 875 SMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTST 934
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSRGL 357
WS++ LS AG+E+++K V ++P Y MS F P + EIE ++ +FWW + Q RG+
Sbjct: 935 WSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGI 992
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 249 bits (637), Expect = 2e-64
Identities = 118/289 (40%), Positives = 182/289 (62%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + E++H++++ K A+K D+SK YD ++W +L+ V+ + F
Sbjct: 434 AFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGF 493
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
W+ W++ CV +V+Y L+NG +++P RGLRQGDPLSP LFI+C E LS L +
Sbjct: 494 HSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRA 553
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
+ ++ GV++ N P ++HLLFADD F +++ + +K+ ILS Y +A GQ++N K
Sbjct: 554 QRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHK 613
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S + S +V + IL ++ GTGKYLGLP GR K+ F I D+I +K +
Sbjct: 614 SSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHS 673
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W+S+ LS+AG++V++K VL S+P Y MS F P +LC +I+ ++ FWW
Sbjct: 674 WASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWW 722
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 246 bits (628), Expect = 2e-63
Identities = 122/297 (41%), Positives = 170/297 (57%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV GR I DN + A E H M+ K A KLD+SK YD +DW +L M K+ F
Sbjct: 1273 AFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGF 1332
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+ +WV WIM CV +V Y V NG ++ P RGLRQGDPL P+LF+ +GLS L+++
Sbjct: 1333 ARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEK 1392
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
A+ + K+C AP ISHLLFADD LFF+ + +A ++ +LS+Y GQ +N K
Sbjct: 1393 VAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAK 1452
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
I V I+ IL V+ +YLG P+ GR K F ++ +IWK++
Sbjct: 1453 CSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQ 1512
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWWGHSGGQSR 355
W LS G+EVLIK V+Q+IP Y M +F P S+ D++ ++ +FWW GQ +
Sbjct: 1513 WGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRK 1569
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 246 bits (627), Expect = 3e-63
Identities = 118/289 (40%), Positives = 178/289 (60%)
Query: 59 AFVSGRSILDNTMDAIEIIHYMKSKVKGKKGDFALKLDISKTYDMIDWSYLRGVMTKMRF 118
AFV R I DN + A E+IH +++ + K A K D+SK YD ++W +L +MT + F
Sbjct: 517 AFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGF 576
Query: 119 SDQWVKWIMMCVETVNYFVLVNGDVISQIIPGRGLRQGDPLSPYLFIICVEGLSALVRKD 178
+++W+ WIM CV +V+Y VL+NG IIP RG+RQGDPLSP LF++C E L ++ K
Sbjct: 577 NNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKA 636
Query: 179 EARGEINGVKICNNAPIISHLLFADDCFLFFRTNVDQASKMRAILSTYERAYGQAVNLQK 238
E G+I G++ + ++HLLFADD L + + ++ LS Y + GQ +NL K
Sbjct: 637 EQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNK 696
Query: 239 SEIFCSRNVLTTVHNNIASILGVQVVIGTGKYLGLPSMIGRSKKSTFSFIKDRIWKKINL 298
S I +NV + + I S G+ + GTGKYLGLP + SK+ F FIK+++ ++
Sbjct: 697 SAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTG 756
Query: 299 WSSKSLSKAGREVLIKFVLQSIPTYFMSLFTHPVSLCDEIERIMNSFWW 347
W +K+LS+ G+EVL+K + ++P Y MS F P +LC ++ +M FWW
Sbjct: 757 WYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWW 805
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.354 0.159 0.546
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,221,344,607
Number of Sequences: 2790947
Number of extensions: 44722158
Number of successful extensions: 205946
Number of sequences better than 10.0: 731
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 290
Number of HSP's that attempted gapping in prelim test: 204748
Number of HSP's gapped (non-prelim): 921
length of query: 879
length of database: 848,049,833
effective HSP length: 136
effective length of query: 743
effective length of database: 468,481,041
effective search space: 348081413463
effective search space used: 348081413463
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 79 (35.0 bits)
Medicago: description of AC144477.8