BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144430.8 - phase: 0 /pseudo
(91 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8SA93 Putative polyprotein [Zea mays] 48 5e-05
UniRef100_Q6K4X1 Hypothetical protein OSJNBa0035A24.33 [Oryza sa... 45 3e-04
UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa] 44 0.001
UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcrip... 42 0.004
UniRef100_Q5ZDG9 Hypothetical protein P0480E02.9 [Oryza sativa] 42 0.005
UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sa... 42 0.005
UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like... 41 0.008
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr... 40 0.011
UniRef100_Q8S0Z8 P0445E10.23 protein [Oryza sativa] 40 0.014
UniRef100_Q5SMW3 Cyst nematode resistance protein-like [Oryza sa... 40 0.018
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 40 0.018
UniRef100_Q7XX00 OSJNBa0079F16.5 protein [Oryza sativa] 40 0.018
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 40 0.018
UniRef100_Q84JX8 Putative reverse transcriptase [Oryza sativa] 39 0.031
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 39 0.041
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 39 0.041
UniRef100_Q7F805 Oryza sativa (japonica cultivar-group) genomic ... 38 0.053
UniRef100_Q6Z0B6 Cyst nematode resistance protein-like protein [... 38 0.069
UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa] 38 0.069
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 38 0.069
>UniRef100_Q8SA93 Putative polyprotein [Zea mays]
Length = 2749
Score = 48.1 bits (113), Expect = 5e-05
Identities = 29/92 (31%), Positives = 40/92 (42%), Gaps = 12/92 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFD-NINFFLEHN-----LGW 55
L KRGM + C C+ E + H L+ C F R W + N+ F + L W
Sbjct: 2612 LQKRGMDHPERCPLCDQDQETLDHMLIGCVFAREFWFKLLLQVNLQFLAPQSEDSAFLEW 2671
Query: 56 WIII-----GLDRQ-LPHLFLSAVWLLWMARN 81
W ++ G+ R L L + VW LW RN
Sbjct: 2672 WRMLCIKVSGIARDGLNSLVILGVWTLWKQRN 2703
>UniRef100_Q6K4X1 Hypothetical protein OSJNBa0035A24.33 [Oryza sativa]
Length = 162
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/86 (26%), Positives = 38/86 (43%), Gaps = 12/86 (13%)
Query: 8 SPTDVCTRCNSTSEDVFHCLLDCAFPRNLW------LAISFDNINFFLEHNLGWW----- 56
S +++C C E H L+DCAF R +W L + +++ + L WW
Sbjct: 48 SYSEICPLCGIEPETAHHLLMDCAFARQVWSSIWSKLGLHMPSLSLYPGLLLDWWEACRK 107
Query: 57 -IIIGLDRQLPHLFLSAVWLLWMARN 81
++ R LF+ W +W+ RN
Sbjct: 108 ELVKEQRRNFDGLFIYTAWGIWLQRN 133
>UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]
Length = 1557
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/85 (31%), Positives = 41/85 (47%), Gaps = 8/85 (9%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFDN-INFFL-EHNLG-WWIIIG 60
KR + +D C C ED H L C ++LWLA+ N ++ + +H LG W+
Sbjct: 1442 KRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGPSWLFNR 1501
Query: 61 L----DRQLPHLFLSAVWLLWMARN 81
L D + P +FL +W +W N
Sbjct: 1502 LALLPDHEQP-MFLMVLWRIWFVHN 1525
>UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 42.0 bits (97), Expect = 0.004
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 3 HKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNLGWWIIIGL 61
++R +S T VC C E + H L DC +W + D I F +L WI L
Sbjct: 25 YRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLVPRDQIRQFFTASLLEWIYKNL 84
Query: 62 DRQ--LPHLFLSAVWLLWMAR 80
+ P +F+ AVW W R
Sbjct: 85 RERGSWPTVFVMAVWWGWKWR 105
>UniRef100_Q5ZDG9 Hypothetical protein P0480E02.9 [Oryza sativa]
Length = 385
Score = 41.6 bits (96), Expect = 0.005
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAI----SFDNINFFLEHNLG--- 54
L RG +C C E H L +C + R +W AI + + +N L H
Sbjct: 258 LATRGWPNGSICPLCRHRQETAIHLLAECRYTRRIWGAIAEWTACEQLNPSLWHQASTVS 317
Query: 55 -WWIIIGLDRQLPH-----LFLSAVWLLWMARNRACIAQE 88
WW + P L L W +W RNR Q+
Sbjct: 318 EWWEATANTKDAPKKALRTLTLLVAWEIWNERNRRTFQQK 357
>UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sativa]
Length = 387
Score = 41.6 bits (96), Expect = 0.005
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS-FDNINFFLE-HNLGWWIII 59
LHK+ + PT C CN+ ED +H L C W I I+ + HNL
Sbjct: 256 LHKKTILPTPTCELCNANLEDTYHIFLRCPMAAAFWNMIQIIPEISSLSDLHNL------ 309
Query: 60 GLDRQLP-----HLFLSAVWLLWMARNRACIAQEP 89
L LP FL W LW RN P
Sbjct: 310 ELSGPLPTFLSSTFFLLCCWRLWNHRNEVVFQNLP 344
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 40.8 bits (94), Expect = 0.008
Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 8/85 (9%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWL-AISFDNINFFLEHNLGWWIIIGLD 62
+R M+ +DVC C SE + H L DC +W+ + F E +L W+ L
Sbjct: 376 RRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGNLK 435
Query: 63 -------RQLPHLFLSAVWLLWMAR 80
R P LF VW W R
Sbjct: 436 ERSDSERRSWPTLFALTVWWGWKWR 460
>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 40.4 bits (93), Expect = 0.011
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 1 MLHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS-------------FDNINF 47
+L RGM C C E + H L C+FPR +W + + N+
Sbjct: 920 LLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYANLYH 979
Query: 48 FL--EHNLGWWIIIGLDRQLPHLFLSAVWLLWMARN 81
FL NL W + L R P + +W +W RN
Sbjct: 980 FLINRDNLKW--PVELRRSFPWI----IWRIWKNRN 1009
>UniRef100_Q8S0Z8 P0445E10.23 protein [Oryza sativa]
Length = 484
Score = 40.0 bits (92), Expect = 0.014
Identities = 27/102 (26%), Positives = 41/102 (39%), Gaps = 12/102 (11%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNL-----GW 55
L KRG +C C+ ED H L+ C + +W L N++F + L W
Sbjct: 314 LAKRGWPHDPLCALCSIDMEDCHHLLVKCPYTNRVWSLLRDRINVHFDIPGRLDLSLADW 373
Query: 56 WIIIGLDRQLPH------LFLSAVWLLWMARNRACIAQEPST 91
W + Q + F+ WL+W RN Q+ +T
Sbjct: 374 WQLARTRFQTRYSKAFDTFFMLVCWLVWKERNARVFDQKFNT 415
>UniRef100_Q5SMW3 Cyst nematode resistance protein-like [Oryza sativa]
Length = 185
Score = 39.7 bits (91), Expect = 0.018
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLA----ISFDNINFFLEHN----L 53
L RG +C C T E H L C + R +W A ++ + +N L
Sbjct: 53 LATRGWPNGSICPLCRRTQETALHLLAACRYTRRVWAALAEWVTCEQLNPSQWRQTSTVL 112
Query: 54 GWWIIIGLDRQLPH-----LFLSAVWLLWMARNRACIAQE 88
WW ++ P L L W +W RNR Q+
Sbjct: 113 DWWEATANIQETPKKTLRTLMLLVAWKIWNERNRRTFQQK 152
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 39.7 bits (91), Expect = 0.018
Identities = 25/94 (26%), Positives = 40/94 (41%), Gaps = 18/94 (19%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS-------------FDNINFF 48
L RG+ D C C E + H L C F R +W A+S F NIN
Sbjct: 1025 LRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVW-ALSLIQAPATGFGTSIFSNINHV 1083
Query: 49 LEHNLGWWIIIGLDRQLPHLFLSAVWLLWMARNR 82
++++ + G+ R + + +W +W RN+
Sbjct: 1084 IQNSQNF----GIPRHMRTVSPWLLWEIWKNRNK 1113
>UniRef100_Q7XX00 OSJNBa0079F16.5 protein [Oryza sativa]
Length = 153
Score = 39.7 bits (91), Expect = 0.018
Identities = 24/92 (26%), Positives = 35/92 (37%), Gaps = 12/92 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAI-SFDNINFFLEHNLG-----W 55
L KRG VC C ED H + C + +W I + + F L + G W
Sbjct: 22 LSKRGWPNQQVCQLCLVVDEDYEHLFVSCTYTTRVWRMIKGWIGVGFLLPYESGLDLGEW 81
Query: 56 WIII------GLDRQLPHLFLSAVWLLWMARN 81
W+ + + L L W++W RN
Sbjct: 82 WLAMRQKFRNNYMDAIDSLVLLICWMVWKERN 113
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 39.7 bits (91), Expect = 0.018
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW----LAISFDNINFFLEHNLGWWI 57
L RG+ D C C++ +E + H L +C R +W L+ + + + N+ I
Sbjct: 1051 LRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLI 1110
Query: 58 IIGLDRQLPH--LFLS--AVWLLWMARN 81
+ LPH F+S +W LW RN
Sbjct: 1111 DLTQQNDLPHHLRFVSPWILWFLWKNRN 1138
>UniRef100_Q84JX8 Putative reverse transcriptase [Oryza sativa]
Length = 1349
Score = 38.9 bits (89), Expect = 0.031
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 12 VCTRCNSTSEDVFHCLLDCAFPRNLWLAI----SFDNINFFLEHNLG-WW--IIIGLDRQ 64
+C+ CNS ED H +C F +W I +F L+ NL WW RQ
Sbjct: 1239 ICSLCNSAFEDAAHLAKECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQ 1298
Query: 65 LPHLFLSAV----WLLWMARNRACIAQ 87
+ L A+ W +W+ RNR Q
Sbjct: 1299 NRNKVLGALITTWWNVWLERNRRIFQQ 1325
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 38.5 bits (88), Expect = 0.041
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 3 HKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFDNIN 46
H+R +S T +C C E + H L DC +WL + D N
Sbjct: 596 HRRHLSTTTICQVCKGAKESIIHVLRDCPAMEGIWLRLISDLAN 639
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 38.5 bits (88), Expect = 0.041
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS--------FDNINFF--LEH 51
L KRG+ C C ++ E + H L C R +W A+S F + + F L+H
Sbjct: 855 LRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW-ALSQIPTAPGIFPSNSIFTNLDH 913
Query: 52 NLGWWIIIGLDRQLPHLFLSAVWLLWMARN 81
L W I G+D P+ ++ +W +W ARN
Sbjct: 914 -LFWRIPSGVD-SAPYPWI--IWYIWKARN 939
>UniRef100_Q7F805 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
PAC clone:P0433F09 [Oryza sativa]
Length = 985
Score = 38.1 bits (87), Expect = 0.053
Identities = 28/105 (26%), Positives = 36/105 (33%), Gaps = 18/105 (17%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAI--------SFDNINF--FLEH 51
L KRG VC C + E V H L C + +W I D N +EH
Sbjct: 851 LGKRGWRNQKVCPLCRTIDESVLHLLAKCRVTKRIWAEIQRWTHTDLQMDKWNDCPSIEH 910
Query: 52 NLGWWIIIGLDRQLPH-----LFLSAVWLLWMARNRACIAQEPST 91
WW ++ P L + W +W RN ST
Sbjct: 911 ---WWNLVVKSPNTPRAPLRTLLMLVTWEIWGERNARIFRSTAST 952
>UniRef100_Q6Z0B6 Cyst nematode resistance protein-like protein [Oryza sativa]
Length = 184
Score = 37.7 bits (86), Expect = 0.069
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNLG-----W 55
L KRG D C C ED H + C + + +W L + N++F L G W
Sbjct: 77 LAKRGWPHQDQCVLCQRQQEDCLHLFVSCDYTKRVWRLLRDWINVDFPLPGQDGETLADW 136
Query: 56 WIIIGL 61
W+I L
Sbjct: 137 WLIARL 142
>UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa]
Length = 3331
Score = 37.7 bits (86), Expect = 0.069
Identities = 15/40 (37%), Positives = 20/40 (49%)
Query: 1 MLHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAI 40
+L KRG+ C C E H L+DC F R +WL +
Sbjct: 1547 LLQKRGIDSHSACPFCAQELETANHILIDCVFARQVWLRV 1586
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 37.7 bits (86), Expect = 0.069
Identities = 21/81 (25%), Positives = 33/81 (39%), Gaps = 4/81 (4%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNLGWWIIIGLD 62
+R +S +C+ CN E + H L DC +W + + F +L W+ +D
Sbjct: 935 RRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMD 994
Query: 63 RQ---LPHLFLSAVWLLWMAR 80
P LF +W W R
Sbjct: 995 PVKGIWPTLFGMGIWWAWKWR 1015
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.331 0.141 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,547,550
Number of Sequences: 2790947
Number of extensions: 5936573
Number of successful extensions: 14592
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 14516
Number of HSP's gapped (non-prelim): 101
length of query: 91
length of database: 848,049,833
effective HSP length: 67
effective length of query: 24
effective length of database: 661,056,384
effective search space: 15865353216
effective search space used: 15865353216
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144430.8