BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.8 + phase: 0 /pseudo
(106 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9MFB8 NADH-ubiquinone oxidoreductase chain 1 [Beta vu... 134 7e-31
UniRef100_P08834 NADH-ubiquinone oxidoreductase chain 1 [Citrull... 134 7e-31
UniRef100_Q37565 NADH dehydrogenase [Oenothera bertiana] 102 3e-21
UniRef100_Q01300 NADH-ubiquinone oxidoreductase chain 1 [Petunia... 102 3e-21
UniRef100_Q5U6E2 NADH dehydrogenase subunit 1 [Beta vulgaris sub... 97 1e-19
UniRef100_Q6R977 NADH-ubiquinone oxidoreductase chain 1 [Zea mays] 95 4e-19
UniRef100_Q9MF78 NADH-ubiquinone oxidoreductase chain 1 [Beta vu... 95 4e-19
UniRef100_Q6YSM5 NADH-ubiquinone oxidoreductase chain 1 [Brassic... 94 6e-19
UniRef100_Q5SBI0 NADH dehydrogenase subunit I [Zea mays] 94 6e-19
UniRef100_Q01148 NADH-ubiquinone oxidoreductase chain 1 [Triticu... 94 6e-19
UniRef100_P31839 NADH-ubiquinone oxidoreductase chain 1 [Oenothe... 94 6e-19
UniRef100_P92558 NADH-ubiquinone oxidoreductase chain 1 [Arabido... 94 6e-19
UniRef100_Q8HCR7 NADH-ubiquinone oxidoreductase chain 1 [Oryza s... 94 8e-19
UniRef100_Q6JP68 NADH dehydrogenase subunit 1 [Mnium sp. Qiu 94097] 93 1e-18
UniRef100_Q6JP38 NADH dehydrogenase subunit 1 [Leucobryum albidum] 93 1e-18
UniRef100_Q6JP65 NADH dehydrogenase subunit 1 [Huperzia lucidula] 92 2e-18
UniRef100_Q6JP64 NADH dehydrogenase subunit 1 [Isoetes sp. Qiu 9... 92 2e-18
UniRef100_Q6JP63 NADH dehydrogenase subunit 1 [Equisetum arvense] 92 4e-18
UniRef100_Q6JP28 NADH dehydrogenase subunit 1 [Megaceros tosanus] 92 4e-18
UniRef100_Q6JP71 NADH dehydrogenase subunit 1 [Sphagnum recurvum] 91 6e-18
>UniRef100_Q9MFB8 NADH-ubiquinone oxidoreductase chain 1 [Beta vulgaris subsp.
vulgaris]
Length = 117
Score = 134 bits (336), Expect = 7e-31
Identities = 72/88 (81%), Positives = 74/88 (83%), Gaps = 1/88 (1%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAE E VAGYNVEYARDAILNS LL
Sbjct: 31 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAERELVAGYNVEYARDAILNSSLL 90
Query: 61 AEANVPGSRGLILTETRGACWGTLHSSF 88
AEAN PG GLILTET G + +S F
Sbjct: 91 AEAN-PGVPGLILTETGGGLYQLQNSRF 117
>UniRef100_P08834 NADH-ubiquinone oxidoreductase chain 1 [Citrullus lanatus]
Length = 316
Score = 134 bits (336), Expect = 7e-31
Identities = 67/70 (95%), Positives = 67/70 (95%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA DAILNSPLL
Sbjct: 148 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLL 207
Query: 61 AEANVPGSRG 70
AEANVPG G
Sbjct: 208 AEANVPGXPG 217
>UniRef100_Q37565 NADH dehydrogenase [Oenothera bertiana]
Length = 331
Score = 102 bits (253), Expect = 3e-21
Identities = 49/50 (98%), Positives = 50/50 (100%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 178 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 227
>UniRef100_Q01300 NADH-ubiquinone oxidoreductase chain 1 [Petunia hybrida]
Length = 325
Score = 102 bits (253), Expect = 3e-21
Identities = 49/50 (98%), Positives = 50/50 (100%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 221
>UniRef100_Q5U6E2 NADH dehydrogenase subunit 1 [Beta vulgaris subsp. vulgaris]
Length = 325
Score = 96.7 bits (239), Expect = 1e-19
Identities = 47/50 (94%), Positives = 48/50 (96%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>UniRef100_Q6R977 NADH-ubiquinone oxidoreductase chain 1 [Zea mays]
Length = 325
Score = 94.7 bits (234), Expect = 4e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMF I RLAETNRAP DLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFLIPRLAETNRAPSDLPEAEAESVAGYNVEYS 221
>UniRef100_Q9MF78 NADH-ubiquinone oxidoreductase chain 1 [Beta vulgaris subsp.
vulgaris]
Length = 325
Score = 94.7 bits (234), Expect = 4e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAE E VAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAERELVAGYNVEYS 221
>UniRef100_Q6YSM5 NADH-ubiquinone oxidoreductase chain 1 [Brassica napus]
Length = 325
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>UniRef100_Q5SBI0 NADH dehydrogenase subunit I [Zea mays]
Length = 87
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/49 (93%), Positives = 46/49 (93%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIWSGIPLFPVLVMF I RLAETNRAP DLPEAEAESVAGYNVEY
Sbjct: 39 MAQKQIWSGIPLFPVLVMFLIPRLAETNRAPSDLPEAEAESVAGYNVEY 87
>UniRef100_Q01148 NADH-ubiquinone oxidoreductase chain 1 [Triticum aestivum]
Length = 325
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>UniRef100_P31839 NADH-ubiquinone oxidoreductase chain 1 [Oenothera bertiana]
Length = 331
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 178 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 227
>UniRef100_P92558 NADH-ubiquinone oxidoreductase chain 1 [Arabidopsis thaliana]
Length = 325
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>UniRef100_Q8HCR7 NADH-ubiquinone oxidoreductase chain 1 [Oryza sativa]
Length = 327
Score = 94.0 bits (232), Expect = 8e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFI LAETNRAP DLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFIPCLAETNRAPSDLPEAEAESVAGYNVEYS 221
>UniRef100_Q6JP68 NADH dehydrogenase subunit 1 [Mnium sp. Qiu 94097]
Length = 228
Score = 93.2 bits (230), Expect = 1e-18
Identities = 44/50 (88%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQKQIW GIPLFPV +MFFIS LAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 117 IAQKQIWFGIPLFPVFIMFFISCLAETNRAPFDLPEAEAESVAGYNVEYS 166
>UniRef100_Q6JP38 NADH dehydrogenase subunit 1 [Leucobryum albidum]
Length = 226
Score = 93.2 bits (230), Expect = 1e-18
Identities = 44/50 (88%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQKQIW GIPLFPV +MFFIS LAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 117 IAQKQIWFGIPLFPVFIMFFISCLAETNRAPFDLPEAEAESVAGYNVEYS 166
>UniRef100_Q6JP65 NADH dehydrogenase subunit 1 [Huperzia lucidula]
Length = 272
Score = 92.4 bits (228), Expect = 2e-18
Identities = 44/50 (88%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQKQIW GIPLFPVL+MFFISRLAETNRAPFDLPEAEAE VAG NVEY+
Sbjct: 118 IAQKQIWFGIPLFPVLIMFFISRLAETNRAPFDLPEAEAELVAGQNVEYS 167
>UniRef100_Q6JP64 NADH dehydrogenase subunit 1 [Isoetes sp. Qiu 96272]
Length = 178
Score = 92.4 bits (228), Expect = 2e-18
Identities = 44/50 (88%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQKQIW GIPLFPVL+MFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 111 IAQKQIWFGIPLFPVLIMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 160
>UniRef100_Q6JP63 NADH dehydrogenase subunit 1 [Equisetum arvense]
Length = 223
Score = 91.7 bits (226), Expect = 4e-18
Identities = 44/50 (88%), Positives = 46/50 (92%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPV +MFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 111 MAQKQIWFGIPLFPVSIMFFISCLAETNRAPFDLPEAEAEFVAGYNVEYS 160
>UniRef100_Q6JP28 NADH dehydrogenase subunit 1 [Megaceros tosanus]
Length = 184
Score = 91.7 bits (226), Expect = 4e-18
Identities = 45/49 (91%), Positives = 46/49 (93%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIW GIPLFPVL+MFFISRLAETNRA DLPEAEAESVAGYNVEY
Sbjct: 65 MAQKQIWFGIPLFPVLIMFFISRLAETNRAFSDLPEAEAESVAGYNVEY 113
>UniRef100_Q6JP71 NADH dehydrogenase subunit 1 [Sphagnum recurvum]
Length = 228
Score = 90.9 bits (224), Expect = 6e-18
Identities = 43/50 (86%), Positives = 46/50 (92%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
+AQKQIW GIPLFPV +MFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 117 IAQKQIWFGIPLFPVFIMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 166
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,730,425
Number of Sequences: 2790947
Number of extensions: 5688248
Number of successful extensions: 14664
Number of sequences better than 10.0: 2621
Number of HSP's better than 10.0 without gapping: 2589
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 12072
Number of HSP's gapped (non-prelim): 2621
length of query: 106
length of database: 848,049,833
effective HSP length: 82
effective length of query: 24
effective length of database: 619,192,179
effective search space: 14860612296
effective search space used: 14860612296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144406.8