Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142222.6 - phase: 0 
         (123 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9M9A2 F27J15.21 [Arabidopsis thaliana]                      85  3e-16
UniRef100_Q9LII3 Gb|AAF43227.1 [Arabidopsis thaliana]                  83  1e-15
UniRef100_Q6ZIR5 Hypothetical protein OJ1038_A06.25 [Oryza sativa]     64  6e-10
UniRef100_Q656A2 Hypothetical protein P0596H06.16 [Oryza sativa]       57  7e-08
UniRef100_Q5VPY8 Hypothetical protein B1096D03.33 [Oryza sativa]       50  2e-05
UniRef100_Q5ZBN9 Hypothetical protein P0704D04.8 [Oryza sativa]        48  4e-05
UniRef100_Q6H8C4 Hypothetical protein OJ1006_A02.44 [Oryza sativa]     45  4e-04
UniRef100_Q9M9H2 F14O23.12 [Arabidopsis thaliana]                      45  5e-04
UniRef100_Q9ASJ0 Hypothetical protein P0439B06.27 [Oryza sativa]       43  0.001
UniRef100_Q9LH80 Gb|AAF43227.1 [Arabidopsis thaliana]                  39  0.027
UniRef100_Q6EQW0 Hypothetical protein OSJNBa0086N11.28 [Oryza sa...    39  0.027
UniRef100_Q6ER70 Hypothetical protein OSJNBa0073A18.24 [Oryza sa...    37  0.10
UniRef100_Q8ID80 Hypothetical protein Phat96 [Plasmodium falcipa...    35  0.39
UniRef100_UPI00003C1C54 UPI00003C1C54 UniRef100 entry                  33  1.1
UniRef100_Q5PIH8 Lysine decarboxylase [Salmonella enterica subsp...    33  1.5
UniRef100_Q60002 Lysine decarboxylase, inducible [Salmonella typ...    33  1.5
UniRef100_UPI00002D4229 UPI00002D4229 UniRef100 entry                  33  1.9
UniRef100_Q60WH4 Hypothetical protein CBG19123 [Caenorhabditis b...    33  1.9
UniRef100_UPI0000467EDA UPI0000467EDA UniRef100 entry                  32  2.5
UniRef100_UPI000029C063 UPI000029C063 UniRef100 entry                  32  2.5

>UniRef100_Q9M9A2 F27J15.21 [Arabidopsis thaliana]
          Length = 156

 Score = 85.1 bits (209), Expect = 3e-16
 Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 44  KTKKLLSNMSNKALSQFG-KMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDI 102
           + K+L + +SNKA++    K    +K    E   G+WQ+EILMGGKCEPLDFSGVI+YD 
Sbjct: 72  RPKELFTTLSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDS 131

Query: 103 NGRQTGEVPLRSPRAIPFSRY 123
           NGR   EVP RSPR  P   Y
Sbjct: 132 NGRLLNEVPPRSPRGTPLPSY 152


>UniRef100_Q9LII3 Gb|AAF43227.1 [Arabidopsis thaliana]
          Length = 195

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 12/88 (13%)

Query: 42  KAKTKKLLSNMSNKALSQFGKMKK------TKK------QRDNELNDGVWQKEILMGGKC 89
           + + K+L + +SNKA++  G+  K      TKK        ++E   GVWQ+EILMGGKC
Sbjct: 85  RVRPKELYTTLSNKAMTMVGRKNKAYDGGPTKKTAVEMVMEEDEEEYGVWQREILMGGKC 144

Query: 90  EPLDFSGVIHYDINGRQTGEVPLRSPRA 117
           EPLD+SGVI+YD +G Q  +VP RSPRA
Sbjct: 145 EPLDYSGVIYYDCSGHQLKQVPPRSPRA 172


>UniRef100_Q6ZIR5 Hypothetical protein OJ1038_A06.25 [Oryza sativa]
          Length = 138

 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 55  KALSQFGKMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE----- 109
           KA+S   + +K   +      DGVW+KEILMG +C+PLDFSGVI+YD  GR+  +     
Sbjct: 56  KAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPR 115

Query: 110 VPLRSP 115
            PLRSP
Sbjct: 116 SPLRSP 121


>UniRef100_Q656A2 Hypothetical protein P0596H06.16 [Oryza sativa]
          Length = 171

 Score = 57.4 bits (137), Expect = 7e-08
 Identities = 27/52 (51%), Positives = 37/52 (70%), Gaps = 1/52 (1%)

Query: 69  QRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE-VPLRSPRAIP 119
           +R+   + G+W+KEILMG +C+PLDFSGVI+YD +GR+     P RSP   P
Sbjct: 105 RREEGDSGGLWRKEILMGERCQPLDFSGVIYYDADGRRLAHPPPPRSPMRSP 156


>UniRef100_Q5VPY8 Hypothetical protein B1096D03.33 [Oryza sativa]
          Length = 138

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 23/55 (41%), Positives = 38/55 (68%), Gaps = 2/55 (3%)

Query: 64  KKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAI 118
           ++ +++    + DGV +KEILM  +C+ LDFSG+I+YD+ GR+  + P   PRA+
Sbjct: 67  RRRRQELSFRVEDGVCRKEILMEERCQSLDFSGMIYYDVAGRRLEQPP--PPRAL 119


>UniRef100_Q5ZBN9 Hypothetical protein P0704D04.8 [Oryza sativa]
          Length = 505

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 18/34 (52%), Positives = 25/34 (72%)

Query: 76  DGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE 109
           +G+W++ ILMG +CEPL F G IHYD  GR+  +
Sbjct: 426 EGLWRRAILMGERCEPLSFPGAIHYDSRGRRLSQ 459


>UniRef100_Q6H8C4 Hypothetical protein OJ1006_A02.44 [Oryza sativa]
          Length = 299

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 23/40 (57%), Positives = 26/40 (64%), Gaps = 2/40 (5%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRA 117
           VWQK ILMGGKC+  +FSGVI+YD  G      P   PRA
Sbjct: 98  VWQKNILMGGKCQLPEFSGVINYDAAGNIV--APSGRPRA 135


>UniRef100_Q9M9H2 F14O23.12 [Arabidopsis thaliana]
          Length = 130

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 19/28 (67%), Positives = 23/28 (81%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGR 105
           +WQK ILMGGKC+  DFSGVI YD +G+
Sbjct: 88  LWQKNILMGGKCQLPDFSGVILYDADGQ 115


>UniRef100_Q9ASJ0 Hypothetical protein P0439B06.27 [Oryza sativa]
          Length = 175

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 18/34 (52%), Positives = 23/34 (66%)

Query: 73  ELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQ 106
           E  + +W+K I+MG KC PL FSG I YD +G Q
Sbjct: 121 EEEEALWRKTIMMGDKCRPLQFSGHIAYDSDGNQ 154


>UniRef100_Q9LH80 Gb|AAF43227.1 [Arabidopsis thaliana]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.027
 Identities = 19/34 (55%), Positives = 22/34 (63%)

Query: 68  KQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYD 101
           K+R     D VWQ+ ILMG KCE   FSG+I YD
Sbjct: 106 KERSLNAVDPVWQRPILMGEKCELPRFSGLILYD 139


>UniRef100_Q6EQW0 Hypothetical protein OSJNBa0086N11.28 [Oryza sativa]
          Length = 202

 Score = 38.9 bits (89), Expect = 0.027
 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGRQ-TGEVPLRS 114
           VWQ+ ILMG +CE   FSG+I YD +GR   G  P RS
Sbjct: 138 VWQRRILMGMRCELPRFSGLILYDEHGRPIRGTTPGRS 175


>UniRef100_Q6ER70 Hypothetical protein OSJNBa0073A18.24 [Oryza sativa]
          Length = 143

 Score = 37.0 bits (84), Expect = 0.10
 Identities = 15/28 (53%), Positives = 21/28 (74%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGR 105
           +WQ+++LMG KC+   FSG+I YD  GR
Sbjct: 89  IWQRKVLMGVKCQLPRFSGMILYDERGR 116


>UniRef100_Q8ID80 Hypothetical protein Phat96 [Plasmodium falciparum]
          Length = 2020

 Score = 35.0 bits (79), Expect = 0.39
 Identities = 23/72 (31%), Positives = 37/72 (50%), Gaps = 4/72 (5%)

Query: 33   SRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQK-EILMGGKCEP 91
            ++Q ++ K   K KK+  N  NK + +  + KK K+ + N  N+ +  K EI    KC  
Sbjct: 1847 NKQNKQNKQNKKVKKIKKNKKNKKIKKNKRNKKIKRNKKNIQNNSLEDKIEIYESDKC-- 1904

Query: 92   LDFSGVIHYDIN 103
             + +GV   DIN
Sbjct: 1905 -NHNGVSKCDIN 1915


>UniRef100_UPI00003C1C54 UPI00003C1C54 UniRef100 entry
          Length = 2102

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 6    SSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKK 65
            SS  + SP   S+S FF  IS     L R +RR  G A     LS+  +K  S+F    +
Sbjct: 949  SSRHASSPSANSSSKFFSRIS-----LPRSSRR--GSAADSSPLSSPDSKPRSRFASFGR 1001

Query: 66   TKK--QRDNELNDG 77
              +   + N+LNDG
Sbjct: 1002 ISRGGSQPNQLNDG 1015


>UniRef100_Q5PIH8 Lysine decarboxylase [Salmonella enterica subsp. enterica serovar
           Paratypi A str. ATCC 9150]
          Length = 714

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


>UniRef100_Q60002 Lysine decarboxylase, inducible [Salmonella typhimurium]
          Length = 714

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


>UniRef100_UPI00002D4229 UPI00002D4229 UniRef100 entry
          Length = 288

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQF--GKMKKTKKQRDNELNDGVW 79
           + AM ++Q R+L     T K L  +  KALS+    + K+  +++ N L D VW
Sbjct: 152 VAAMTNKQLRKLPSNNLTPKQLKTLPTKALSKLTPKQFKQLNRKQINALPDAVW 205


>UniRef100_Q60WH4 Hypothetical protein CBG19123 [Caenorhabditis briggsae]
          Length = 1814

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 2   ANLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFG 61
           A+ +S P  LSP + S S+   +   ++ +   +  +   K + +K  S    K   +  
Sbjct: 676 ASTSSKPMKLSPPKFSKSASIDSTETVIHVKPEEKEK---KEEERKEESTHEKKKRRKKR 732

Query: 62  KMKKTKKQRDNEL----NDGVWQKEILM--GGKCEPLDFSGVIHYDINGR 105
           K  KTKK R++EL    N G     +LM    + E         YD+ GR
Sbjct: 733 KRMKTKKSREHELRFLKNSGNQTSPVLMDCSTQYEVFTTDSGSQYDVKGR 782


>UniRef100_UPI0000467EDA UPI0000467EDA UniRef100 entry
          Length = 367

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 3   NLTSSPESLSPKRQSNSSFFI--TISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQF 60
           N +SS       R S S+  I  T  ++  +L  +   +K K KTK     + NKA  ++
Sbjct: 55  NNSSSSSKGKGSRFSKSNLQIEETEKSLWEILKEKEEYIKNKKKTKLYKKELDNKANKEY 114

Query: 61  GKMKKTKKQRDNELND 76
            K+ K +K  + +++D
Sbjct: 115 EKIMKEEKYMNQQISD 130


>UniRef100_UPI000029C063 UPI000029C063 UniRef100 entry
          Length = 602

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 2/86 (2%)

Query: 32  LSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRD-NELNDGVWQKEILMGGK-C 89
           LSR+      K + +  L+   N A S F      K++R  N  +D V     L+GG   
Sbjct: 82  LSRRNTLHHSKQQQQTKLAKRRNTANSSFKHPSSGKRRRRANSESDSVLPTNFLLGGNIF 141

Query: 90  EPLDFSGVIHYDINGRQTGEVPLRSP 115
           +PL+ + ++  ++N     E P  SP
Sbjct: 142 DPLNLNSLMDEEVNRALNAETPKSSP 167


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,119,336
Number of Sequences: 2790947
Number of extensions: 6925603
Number of successful extensions: 21276
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 21250
Number of HSP's gapped (non-prelim): 50
length of query: 123
length of database: 848,049,833
effective HSP length: 99
effective length of query: 24
effective length of database: 571,746,080
effective search space: 13721905920
effective search space used: 13721905920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)


Medicago: description of AC142222.6