BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142143.6 - phase: 0 /pseudo
(175 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q84T47 Putative reverse transcriptase [Oryza sativa] 60 3e-08
UniRef100_Q7XXA4 OSJNBa0019G23.12 protein [Oryza sativa] 59 4e-08
UniRef100_Q6ATM7 Hypothetical protein OSJNBb0021K20.15 [Oryza sa... 57 2e-07
UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa] 56 3e-07
UniRef100_Q7XE51 Putative non-LTR retroelement reverse transcrip... 55 6e-07
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 55 6e-07
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 55 6e-07
UniRef100_Q688F2 Hypothetical protein OSJNBa0035I01.8 [Oryza sat... 54 2e-06
UniRef100_Q7XW91 OSJNBb0043H09.5 protein [Oryza sativa] 54 2e-06
UniRef100_Q7XMF5 OSJNBa0061G20.4 protein [Oryza sativa] 54 2e-06
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 53 4e-06
UniRef100_Q8H807 Putative non-LTR retroelement reverse transcrip... 52 5e-06
UniRef100_Q8S869 Putative retroelement [Oryza sativa] 50 2e-05
UniRef100_Q7FS87 Putative glycerol 3-phosphate permease [Zea mays] 50 2e-05
UniRef100_Q7XEL7 Putative non-LTR retroelement reverse transcrip... 50 2e-05
UniRef100_Q60E26 Hypothetical protein OSJNBb0012L23.11 [Oryza sa... 49 5e-05
UniRef100_Q94H50 Hypothetical protein OSJNBb0057P11.26 [Oryza sa... 49 5e-05
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 48 1e-04
UniRef100_Q9ZUF0 Putative non-LTR retroelement reverse transcrip... 48 1e-04
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 48 1e-04
>UniRef100_Q84T47 Putative reverse transcriptase [Oryza sativa]
Length = 746
Score = 59.7 bits (143), Expect = 3e-08
Identities = 27/73 (36%), Positives = 45/73 (60%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
Q G + F YLGLP+G +++ + P++DR+++RL + FL+ G R+ L FVLS +
Sbjct: 496 QSGNLPFTYLGLPVGTTKPKIIDFAPLIDRVERRLPAVTMFLNHGQRLTLVNFVLSSLPT 555
Query: 63 YALSFFKVPSGII 75
Y + K+P +I
Sbjct: 556 YYMCSLKIPKKVI 568
>UniRef100_Q7XXA4 OSJNBa0019G23.12 protein [Oryza sativa]
Length = 1140
Score = 59.3 bits (142), Expect = 4e-08
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIH 61
Q+G F YLG+PI R W+ V++R +K+LS K LS GGR+ L VLS +
Sbjct: 974 QVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLP 1033
Query: 62 VYALSFFKVPSGIISSM 78
+Y +SF +PSG++ +
Sbjct: 1034 MYMMSFLAIPSGVLKKL 1050
>UniRef100_Q6ATM7 Hypothetical protein OSJNBb0021K20.15 [Oryza sativa]
Length = 352
Score = 57.4 bits (137), Expect = 2e-07
Identities = 28/74 (37%), Positives = 45/74 (59%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYA 64
G + F YLGLP+G R++ + P++DRI++RLS S FLS G R+ L V S + Y
Sbjct: 61 GSMPFTYLGLPLGTTKPRVIDFAPLVDRIERRLSANSAFLSNGDRLTLMNSVFSSLPTYY 120
Query: 65 LSFFKVPSGIISSM 78
+ ++P +I ++
Sbjct: 121 MCILQLPKSVIENI 134
>UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa]
Length = 593
Score = 56.2 bits (134), Expect = 3e-07
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIHVY 63
G YLGLP+ W+ V +R +KRL S K LS GGR+VL VLS + +Y
Sbjct: 194 GSYTLKYLGLPMHYRKLSNKDWKEVEERFQKRLGSWKGKLLSVGGRLVLINSVLSSLAMY 253
Query: 64 ALSFFKVPSGIISSM 78
LSFF+VP GII +
Sbjct: 254 MLSFFEVPKGIIKKL 268
>UniRef100_Q7XE51 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1652
Score = 55.5 bits (132), Expect = 6e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 9 FLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSF 67
F YLG+ + W+ V +RI+K+LS KFLS GGR+VL VLS + ++ LSF
Sbjct: 1463 FKYLGIRMHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSF 1522
Query: 68 FKVPSGIISSM 78
F++P GI+ +
Sbjct: 1523 FEIPKGILKKL 1533
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 55.5 bits (132), Expect = 6e-07
Identities = 30/74 (40%), Positives = 47/74 (62%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + +E ++DR+KKR S S +FLS G+ ++ K V + VYA+S FK
Sbjct: 1132 YLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFK 1191
Query: 70 VPSGIISSMKSIFI 83
+P GI+S ++S+ +
Sbjct: 1192 LPKGIVSEIESLLM 1205
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 55.5 bits (132), Expect = 6e-07
Identities = 30/74 (40%), Positives = 47/74 (62%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + +E ++DR+KKR S S +FLS G+ ++ K V + VYA+S FK
Sbjct: 906 YLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFK 965
Query: 70 VPSGIISSMKSIFI 83
+P GI+S ++S+ +
Sbjct: 966 LPKGIVSEIESLLM 979
>UniRef100_Q688F2 Hypothetical protein OSJNBa0035I01.8 [Oryza sativa]
Length = 816
Score = 53.9 bits (128), Expect = 2e-06
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
++G + F YLGLP+G R++ + P++D +++RL+ S FL GGR+ L V+ I
Sbjct: 528 KIGSLPFTYLGLPLGTTRPRVVDFAPLVDIVERRLTASSIFLPQGGRLTLINSVMPSIPT 587
Query: 63 YALSFFKVPSGII------SSMKSIFIKKKK 87
Y +S ++P +I SS + I K+K
Sbjct: 588 YYMSSLQLPVTVIKAIDTASSSDRVCIPKEK 618
>UniRef100_Q7XW91 OSJNBb0043H09.5 protein [Oryza sativa]
Length = 858
Score = 53.5 bits (127), Expect = 2e-06
Identities = 24/72 (33%), Positives = 44/72 (60%)
Query: 4 MGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVY 63
+G + F YLGLP+G +++ + P++DR+++RL + FL+ G R+ + VLS + Y
Sbjct: 616 IGSLPFTYLGLPVGTTRPKIIDFVPLIDRVERRLPAITMFLNQGQRLTMVNSVLSSLPTY 675
Query: 64 ALSFFKVPSGII 75
+ K+P +I
Sbjct: 676 YMCTLKIPKKVI 687
>UniRef100_Q7XMF5 OSJNBa0061G20.4 protein [Oryza sativa]
Length = 632
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
Q+G + F YLGLP+G +++ + P++DR ++RL+ + FLS+G R+ L V S +
Sbjct: 207 QLGSLPFTYLGLPLGTIKPKVIDFAPLVDRTERRLTSNAYFLSYGVRLTLVNSVFSSLPT 266
Query: 63 YALSFFKVPSGIISSM 78
Y + +P +I S+
Sbjct: 267 YYMCTLMLPKTVIDSI 282
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 52.8 bits (125), Expect = 4e-06
Identities = 29/74 (39%), Positives = 46/74 (61%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + + ++DR+K+R + S KFLS G+ +L K V + VYA+S FK
Sbjct: 371 YLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFK 430
Query: 70 VPSGIISSMKSIFI 83
+P GI+S ++S+ +
Sbjct: 431 LPQGIVSEIESLLM 444
>UniRef100_Q8H807 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 603
Score = 52.4 bits (124), Expect = 5e-06
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVY 63
G F YLG+P+ W+ + +R +++LS K LS GGR+VL VLS + ++
Sbjct: 197 GTYPFRYLGIPMHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVGGRLVLINSVLSSLAMF 256
Query: 64 ALSFFKVPSGIISSM 78
LSFF+VP GI+ +
Sbjct: 257 MLSFFEVPKGILKKL 271
>UniRef100_Q8S869 Putative retroelement [Oryza sativa]
Length = 779
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIH 61
++G + F YLGLP+G P++ +I+KRL S S LS+GGR + LS +
Sbjct: 138 KVGSLPFTYLGLPMGVGKVGKRDLLPIMQKIEKRLQSWHSGHLSYGGREIRINTFLSSVP 197
Query: 62 VYALSFFKVPSGIISSMKSI 81
+YA+ FFK+P ++++I
Sbjct: 198 MYAMGFFKLPEEFHKNLETI 217
>UniRef100_Q7FS87 Putative glycerol 3-phosphate permease [Zea mays]
Length = 1279
Score = 50.4 bits (119), Expect = 2e-05
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
++G + F YLGLP+G +L + P++ +I+KRL+ S FLS GR+ + V S +
Sbjct: 359 KIGSLSFTYLGLPLGIQRPKLGAFLPLIQKIEKRLASTSIFLSQAGRLEMVNAVFSSLPT 418
Query: 63 YALSFFKVPSGII 75
Y + K+P +I
Sbjct: 419 YYMCTLKLPKMVI 431
>UniRef100_Q7XEL7 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 339
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIH 61
++G + F YLGLP+G P++ +I+KRL S S LS+GGR + LS +
Sbjct: 33 KVGSLPFTYLGLPMGVGKVGKRDLLPIMQKIEKRLQSWHSGHLSYGGREIRINTFLSSVP 92
Query: 62 VYALSFFKVPSGIISSMKSI 81
+YA+ FFK+P ++++I
Sbjct: 93 MYAMGFFKLPEEFHKNLETI 112
>UniRef100_Q60E26 Hypothetical protein OSJNBb0012L23.11 [Oryza sativa]
Length = 720
Score = 48.9 bits (115), Expect = 5e-05
Identities = 23/71 (32%), Positives = 42/71 (58%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYA 64
G + F YLGLP+ ++ + P++DR+++RL + FL++G R+ + VLS + Y
Sbjct: 443 GTLPFTYLGLPLVTTKPKVSDFAPLIDRVERRLPSTTIFLNYGQRLTMVNSVLSSLPTYY 502
Query: 65 LSFFKVPSGII 75
+ K+P +I
Sbjct: 503 MCTLKLPKKVI 513
>UniRef100_Q94H50 Hypothetical protein OSJNBb0057P11.26 [Oryza sativa]
Length = 263
Score = 48.9 bits (115), Expect = 5e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Query: 9 FLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYALSFF 68
F YLGL +G +++ + P++DRI++RL+ S FL +GGR+ L VL I Y +
Sbjct: 3 FTYLGLLMGTTRPKVIDFVPLVDRIERRLTSSSMFLPYGGRLTLVNSVLYAIPRYYMCSL 62
Query: 69 KVPSGIISSM 78
++P +I ++
Sbjct: 63 QLPITVIEAI 72
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 47.8 bits (112), Expect = 1e-04
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + + +++R+KKR S S K+LS G+ ++ K V + VYA+S FK
Sbjct: 1112 YLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFK 1171
Query: 70 VPSGIISSMKSIFI 83
+P I+S ++++ +
Sbjct: 1172 LPLNIVSEIEALLM 1185
>UniRef100_Q9ZUF0 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 47.8 bits (112), Expect = 1e-04
Identities = 27/81 (33%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIH 61
++G + YLGLP+ + P++++I+ R+ S ++FLSF GR+ L K VLS I
Sbjct: 910 ELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSIT 969
Query: 62 VYALSFFKVPSGIISSMKSIF 82
+ LS F++P + ++ +F
Sbjct: 970 NFWLSVFRLPKACLQEIEKMF 990
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 47.8 bits (112), Expect = 1e-04
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + + +++R+KKR S S K+LS G+ ++ K V + VYA+S FK
Sbjct: 1132 YLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFK 1191
Query: 70 VPSGIISSMKSIFI 83
+P I+S ++++ +
Sbjct: 1192 LPLNIVSEIEALLM 1205
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.357 0.167 0.590
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,306,539
Number of Sequences: 2790947
Number of extensions: 7906225
Number of successful extensions: 40340
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 40219
Number of HSP's gapped (non-prelim): 163
length of query: 175
length of database: 848,049,833
effective HSP length: 119
effective length of query: 56
effective length of database: 515,927,140
effective search space: 28891919840
effective search space used: 28891919840
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC142143.6