Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.4 + phase: 0 /pseudo
         (1194 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q8LM25 Putative retroelement [Oryza sativa]                 106  5e-21
UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sa...   105  1e-20
UniRef100_Q6UUS9 Putative gag-pol [Oryza sativa]                      104  1e-20
UniRef100_Q7XLE6 OSJNBa0013A04.23 protein [Oryza sativa]              104  2e-20
UniRef100_Q7XSP1 OSJNBa0070M12.15 protein [Oryza sativa]              104  2e-20
UniRef100_Q7X7W5 OSJNBb0046P18.13 protein [Oryza sativa]              103  2e-20
UniRef100_Q7XNI8 OSJNBb0032D24.5 protein [Oryza sativa]               103  2e-20
UniRef100_Q7XX64 OSJNBa0052P16.15 protein [Oryza sativa]              103  3e-20
UniRef100_Q6AVG0 Putative retrotransposon gag protein [Oryza sat...   103  3e-20
UniRef100_Q8L592 Putative gag-pol [Oryza sativa]                      102  5e-20
UniRef100_Q75HC5 Putative reverse transcriptase [Oryza sativa]        102  5e-20
UniRef100_Q7X8E6 OSJNBb0012A12.6 protein [Oryza sativa]               102  5e-20
UniRef100_Q7XFQ0 Putative retroelement [Oryza sativa]                 102  5e-20
UniRef100_Q6AVD1 Putative polyprotein [Oryza sativa]                  102  5e-20
UniRef100_Q7XK70 OSJNBa0028M15.17 protein [Oryza sativa]              102  7e-20
UniRef100_Q8S6X2 Putative pol polyprotein [Oryza sativa]              102  7e-20
UniRef100_Q7FAL2 OSJNBa0042N22.17 protein [Oryza sativa]              102  9e-20
UniRef100_Q7XLR5 OSJNBb0093G06.6 protein [Oryza sativa]               101  2e-19
UniRef100_Q7XNM6 OSJNBb0068N06.4 protein [Oryza sativa]               100  2e-19
UniRef100_Q6ASW9 Reverse transcriptase (RNA-dependent DNA polyme...   100  2e-19

>UniRef100_Q8LM25 Putative retroelement [Oryza sativa]
          Length = 858

 Score =  106 bits (264), Expect = 5e-21
 Identities = 52/134 (38%), Positives = 85/134 (62%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG+ ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 365 PLYINGYVNGMPLSKIMVDGGAVVNLMPYATFRKLGRNSEDLIKTNMVLKDFGGNPSETK 424

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  ++
Sbjct: 425 GVLNVELTVGSKTVPTTFFVIDRKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIK 483

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 484 IVPADRSVNVASAD 497


>UniRef100_Q94LN5 Putative retroelement pol polyprotein [Oryza sativa]
          Length = 1580

 Score =  105 bits (261), Expect = 1e-20
 Identities = 51/125 (40%), Positives = 80/125 (63%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   ++
Sbjct: 363 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETM 422

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 423 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQCLIQWQGD-KIE 481

Query: 121 NVEAD 125
            V AD
Sbjct: 482 IVPAD 486



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F+Q+ IIYR GIP+TITTDQG
Sbjct: 1315 FTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQG 1355


>UniRef100_Q6UUS9 Putative gag-pol [Oryza sativa]
          Length = 1672

 Score =  104 bits (260), Expect = 1e-20
 Identities = 54/133 (40%), Positives = 83/133 (61%), Gaps = 1/133 (0%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + G
Sbjct: 656 LYINGYVNGKPMSKMMVDGGAAVNLIPYAKFRKLGRNAEDLIKTNMVLKDFGGNPSETKG 715

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVEN 121
            + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D L E 
Sbjct: 716 VLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGDKL-EI 774

Query: 122 VEADQSYFLAEVN 134
           V AD+S  +A  N
Sbjct: 775 VPADRSVNVASAN 787



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 27/41 (65%), Positives = 32/41 (77%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F Q+ +IYRF IP+TITTDQG
Sbjct: 1407 FTKWLEAIPLKKVDSGDAIQFFQEHVIYRFDIPQTITTDQG 1447


>UniRef100_Q7XLE6 OSJNBa0013A04.23 protein [Oryza sativa]
          Length = 1235

 Score =  104 bits (259), Expect = 2e-20
 Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+++  +NG  ++K++VDGGA VNL+P +   K+G    DL   NV+L ++ G+   + 
Sbjct: 205 PLYVKGFVNGKPMSKMMVDGGAAVNLMPYATFRKLGKNADDLIKTNVVLNDFGGNPSENK 264

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL +GS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 265 GVLNVELTIGSKTDPTTFFVIDGKGSYSMLLGRDWIHANCCIPSTMHQSLIQWQGD-KIE 323

Query: 121 NVEADQSYFLAEVN 134
            V AD    +   N
Sbjct: 324 IVLADSQLKMESPN 337



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQ 1193
            FTKW+EA+PLK V   + I  ++++I+YRFG+P+ ITTDQ
Sbjct: 970  FTKWVEAVPLKKVDSGDAIQLVKEYIVYRFGVPQIITTDQ 1009


>UniRef100_Q7XSP1 OSJNBa0070M12.15 protein [Oryza sativa]
          Length = 1685

 Score =  104 bits (259), Expect = 2e-20
 Identities = 52/125 (41%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 739 PLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRTTEDLMKTNMVLKDFGGNPSETK 798

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  VE
Sbjct: 799 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KVE 857

Query: 121 NVEAD 125
            V AD
Sbjct: 858 IVPAD 862


>UniRef100_Q7X7W5 OSJNBb0046P18.13 protein [Oryza sativa]
          Length = 766

 Score =  103 bits (258), Expect = 2e-20
 Identities = 53/134 (39%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N+ L ++ G+   + 
Sbjct: 357 PLYINGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKMNMALKDFGGNPSETK 416

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 417 GVLNVELSVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 475

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 476 IVPADRSVNVASAD 489


>UniRef100_Q7XNI8 OSJNBb0032D24.5 protein [Oryza sativa]
          Length = 1355

 Score =  103 bits (258), Expect = 2e-20
 Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 352 PLYINGYVNGKPLSKMIVDGGAAVNLMPYATFRKLGRSSDDLIKTNMVLKDFGGNQSETK 411

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+ Q +  W+ D  +E
Sbjct: 412 GVLNVELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMQQCLIQWQGD-KIE 470

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 471 IVPADRSVNIASAD 484



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW++AIPLK V   + I F+Q+ IIYRFGIP+TITTDQG
Sbjct: 1241 FTKWVDAIPLKKVDSGDAIQFVQEHIIYRFGIPQTITTDQG 1281


>UniRef100_Q7XX64 OSJNBa0052P16.15 protein [Oryza sativa]
          Length = 858

 Score =  103 bits (257), Expect = 3e-20
 Identities = 52/127 (40%), Positives = 79/127 (61%), Gaps = 1/127 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++ ++VDGGATVNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 567 PLYINGFVNGKPMSNMMVDGGATVNLMPYATFRKLGRNAEDLSKTNMVLKDFGGNPSETK 626

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K  +++LLGR+WIH    +PST+HQ +  W E   +E
Sbjct: 627 GVLNVELTVGSKTIPTTFFVIDGKGCYSLLLGRDWIHANCCIPSTMHQCLIQW-EGNKIE 685

Query: 121 NVEADQS 127
            V AD+S
Sbjct: 686 IVPADRS 692


>UniRef100_Q6AVG0 Putative retrotransposon gag protein [Oryza sativa]
          Length = 1251

 Score =  103 bits (257), Expect = 3e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 700 PLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKTNMVLKDFGGNPSETR 759

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 760 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 818

Query: 121 NVEAD 125
            V AD
Sbjct: 819 IVPAD 823


>UniRef100_Q8L592 Putative gag-pol [Oryza sativa]
          Length = 1383

 Score =  102 bits (255), Expect = 5e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 649 PLYINGYVNGKPMSKMIVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 708

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 709 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 767

Query: 121 NVEAD 125
            V AD
Sbjct: 768 IVPAD 772



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 25/41 (60%), Positives = 30/41 (72%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK     + I F+Q+ IIYRFGI + I TDQG
Sbjct: 1241 FTKWVEAIPLKKANSGDAIQFVQEHIIYRFGISQNIMTDQG 1281


>UniRef100_Q75HC5 Putative reverse transcriptase [Oryza sativa]
          Length = 1149

 Score =  102 bits (255), Expect = 5e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 662 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLEDFGGNPSETK 721

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 722 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 780

Query: 121 NVEAD 125
            V AD
Sbjct: 781 IVPAD 785


>UniRef100_Q7X8E6 OSJNBb0012A12.6 protein [Oryza sativa]
          Length = 243

 Score =  102 bits (255), Expect = 5e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 48  PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNSYDLIKTNMVLKDFGGNPSETK 107

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 108 GVLNVELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 166

Query: 121 NVEAD 125
            V AD
Sbjct: 167 IVPAD 171


>UniRef100_Q7XFQ0 Putative retroelement [Oryza sativa]
          Length = 1025

 Score =  102 bits (255), Expect = 5e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 120 PLYINGYVNGKPLSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 179

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 180 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 238

Query: 121 NVEAD 125
            V AD
Sbjct: 239 IVPAD 243



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 35/69 (50%), Positives = 41/69 (58%), Gaps = 8/69 (11%)

Query: 1134 RGD*TYFIEMI--------QIYLSRDRLFTKWIEAIPLKDVTQEEVISFIQKFIIYRFGI 1185
            RG   Y I MI        Q  L     FTKW+EAIPLK V   + I F+ + IIYRFG+
Sbjct: 903  RGWGIYMIGMINPPSSKGHQFILVATDYFTKWVEAIPLKKVDSGDAIQFVHEHIIYRFGL 962

Query: 1186 PETITTDQG 1194
            P+TITTDQG
Sbjct: 963  PQTITTDQG 971


>UniRef100_Q6AVD1 Putative polyprotein [Oryza sativa]
          Length = 1418

 Score =  102 bits (255), Expect = 5e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 856 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 915

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 916 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 974

Query: 121 NVEAD 125
            V AD
Sbjct: 975 IVPAD 979


>UniRef100_Q7XK70 OSJNBa0028M15.17 protein [Oryza sativa]
          Length = 1218

 Score =  102 bits (254), Expect = 7e-20
 Identities = 50/129 (38%), Positives = 79/129 (60%), Gaps = 1/129 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 339 PLYINGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 398

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VG+    TTF V+  K ++++LLGR+WIH    +PS +HQ +  W+ D  +E
Sbjct: 399 GGLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSAMHQCLIKWQGD-KIE 457

Query: 121 NVEADQSYF 129
            V  D  YF
Sbjct: 458 IVPTDSYYF 466



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F+Q+ IIYRFGI +TITTDQG
Sbjct: 953  FTKWVEAIPLKKVDSGDAIQFVQEHIIYRFGILQTITTDQG 993


>UniRef100_Q8S6X2 Putative pol polyprotein [Oryza sativa]
          Length = 505

 Score =  102 bits (254), Expect = 7e-20
 Identities = 55/136 (40%), Positives = 82/136 (59%), Gaps = 1/136 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+++  I+G  V+++LVD GA VNL+P S   ++G  D +LK  N+IL  + G    + 
Sbjct: 321 PLYLKGHIDGKPVSRMLVDRGAAVNLMPYSLFKRLGRGDDELKKTNMILNGFNGEPTEAK 380

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G   +EL +G+    TTF +V  + ++NV+LGR WIH    VPST+HQ +  W  D  VE
Sbjct: 381 GIFSVELTMGNKTLPTTFFIVDVQGSYNVILGRCWIHANCCVPSTLHQCLIQWDGDD-VE 439

Query: 121 NVEADQSYFLAEVNTI 136
            V+AD S  +A  + I
Sbjct: 440 IVQADTSTEVAMADAI 455


>UniRef100_Q7FAL2 OSJNBa0042N22.17 protein [Oryza sativa]
          Length = 1436

 Score =  102 bits (253), Expect = 9e-20
 Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 1/125 (0%)

Query: 1    PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
            PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+S  + 
Sbjct: 888  PLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRNAEDLIRMNMVLKDFGGNSSETK 947

Query: 61   GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
            G + +EL VGS    T+F V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  VE
Sbjct: 948  GVLNVELTVGSKTIPTSFFVIDGKGSYSLLLGRDWIHVNCCIPSTMHQCLIQWQGD-KVE 1006

Query: 121  NVEAD 125
             V AD
Sbjct: 1007 IVPAD 1011


>UniRef100_Q7XLR5 OSJNBb0093G06.6 protein [Oryza sativa]
          Length = 1165

 Score =  101 bits (251), Expect = 2e-19
 Identities = 49/127 (38%), Positives = 79/127 (61%), Gaps = 1/127 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL++   +NG  ++K++V+GGA VNL+P +   K+G    DL   N++L N+ G+   + 
Sbjct: 279 PLYVNGYVNGKPMSKMMVNGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKNFGGNPSETK 338

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL  GS    TTF V+  K ++N+LLG +WIH    +PST+HQ +  W+ D  +E
Sbjct: 339 GVLNVELTAGSKTIPTTFFVIDGKGSYNLLLGSDWIHANCCIPSTMHQCLIQWQGD-KIE 397

Query: 121 NVEADQS 127
            V AD++
Sbjct: 398 IVPADRT 404


>UniRef100_Q7XNM6 OSJNBb0068N06.4 protein [Oryza sativa]
          Length = 959

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/134 (37%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           P ++   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 527 PFYVNGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 586

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST++Q +  W+ D  +E
Sbjct: 587 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMNQCLIQWQVD-KIE 645

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 646 IVPADRSVNVASAD 659


>UniRef100_Q6ASW9 Reverse transcriptase (RNA-dependent DNA polymerase) domain
           containing protein [Oryza sativa]
          Length = 1372

 Score =  100 bits (250), Expect = 2e-19
 Identities = 49/127 (38%), Positives = 81/127 (63%), Gaps = 1/127 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 436 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNVEDLIKTNMVLKDFGGNPSETK 495

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VG+    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  ++
Sbjct: 496 GVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIQ 554

Query: 121 NVEADQS 127
            V AD++
Sbjct: 555 IVPADRA 561



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 29/41 (70%), Positives = 33/41 (79%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F Q+ IIYRFGIP+TITTDQG
Sbjct: 1107 FTKWVEAIPLKKVDSGDAIQFFQEHIIYRFGIPQTITTDQG 1147


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.348    0.153    0.528 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,770,698,925
Number of Sequences: 2790947
Number of extensions: 68312604
Number of successful extensions: 229231
Number of sequences better than 10.0: 736
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 391
Number of HSP's that attempted gapping in prelim test: 228157
Number of HSP's gapped (non-prelim): 1220
length of query: 1194
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1055
effective length of database: 460,108,200
effective search space: 485414151000
effective search space used: 485414151000
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 81 (35.8 bits)


Medicago: description of AC140773.4